# STOCKHOLM 1.0
#=GF ID mir-584
#=GF AC RF01016
#=GF DE mir-584 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 80.0
#=GF NC 79.8
#=GF TC 80.3
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000533;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 16505370
#=GF RT The colorectal microRNAome.
#=GF RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
#=GF RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
#=GF RA Kinzler KW, Vogelstein B, Velculescu VE
#=GF RL Proc Natl Acad Sci U S A. 2006;103:3687-3692.
#=GF RN [2]
#=GF RM 17604727
#=GF RT A mammalian microRNA expression atlas based on small RNA library
#=GF RT sequencing.
#=GF RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
#=GF RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
#=GF RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
#=GF RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
#=GF RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
#=GF RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
#=GF RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
#=GF RA JJ, Sander C, Zavolan M, Tuschl T
#=GF RL Cell. 2007;129:1401-1414.
#=GF RN [3]
#=GF RM 17616659
#=GF RT Patterns of known and novel small RNAs in human cervical cancer.
#=GF RA Lui WO, Pourmand N, Patterson BK, Fire A
#=GF RL Cancer Res. 2007;67:6031-6043.
#=GF RN [4]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF CC Family represents the microRNA (miRNA) precursor mir-584 imported from
#=GF CC miRBase [4].
#=GF WK Mir-584_microRNA_precursor_family
#=GF SQ 16

AANU01185361.1/45786-45882   UAGGGUGACCAGCCAUUAUGGUUUGCCUGGGACUGA-----GG-AAUUUGCUGG----GAUA-UG--------------------------UCA-GUUCC-AGGCCAACCAGGCUG-GUUGGUUUCCCUGAAGCAAC
AAPY01567440.1/5861-5765     UAGGAUGACCAACCAACCUGGUUUGCUUGGGACUGU-----GC-AGGCUCCCAG----GAUA-G---------------------------ACA-GUCCU-AGGUAAACCAGGAUAAGUUGGUUACCCUAGGGCUGG
AC068547.7/82954-82858       UAGGGUGACUAGCCAUCAGGGUUUGCCUGGGACUGU-----CC-UGUGUCCUGGGAAACACU-GA----------------------------A-GUCCC-AGGCAAACCAGGAAG-GUUGGUCAC--UGAAGCCUC
AANG01682402.1/3939-4034     UAGGGCGACCAGUUGUCCCGGUUGGCCUGCGACUGA-----GG-UGUUUUGCCA----ACUA-GG--------------------------ACA-GUCCC-AGGCAAGCCGGAG-A-GUUGGUCACCCUAAAUCUGG
AAFC03076184.1/35990-36088   AGGGAUGACCAACUGUCCUGGUUUGCCUGGGACUGA-----GG-GGUUACUGAG----GACA-CG--------------------------UGAAGUCCCUGGGCAAACUGGAGUG-GUUGGUUCAUUCUAGCUUUU
CT954319.9/106515-106393     UAGGGUCACCAACUGUCCCAGUUUGCCUGAGACUGA-----GG-AAUUUCCUGG----CAUA-CAGAUGUUCCAUACCAGUGCCAGGACAGUUA-GUUCC-AGGCAAACUGGGACA-GUUGGUCACCCAGGUGCCCA
AC123970.3/75714-75835       UAGGAUGACCAACUGUCCUGGUUUGCCUGAAACAGA-----GG-CAUUUCCCAG----GACA-CAGGACUCUUUGAA-AGCUAAAAGCAGGACA-GUUCU-GGGUAAUCCAGAACA-GUUGGUCAUUCUAAUUAAAA
AAHX01054361.1/29631-29525   CAGGUUGAUCAAGUGCCCUGGUUUGCCUGGGGCUGA----GGG-UUUUUCCAGG----GCAG-GGGACU-----------------UUCUUUCA-GUUCU-GGGCAAACCAGGGUG-GUUGGUCACCCUAGUGAUAA
AAGV020769799.1/1706-1607    UAGGGCAACCAGCUGUCCCGGUUUGCCCAGGACUUG-C-ACAG-UUUUUGUAGG----AAAC-CU-------------------------UUUG-GUCCU--GGCAAGCUGGGACA-GCUGGUCACCCUAAAGCCCA
AAWR02024077.1/7850-7748     UAGAGUCACCAACUGUUCAUGUUUGCCUGGGACUGA-----GG-AAUUUCCCAG----GAUG-CAGGA--------------------CUUUCA-GUCUU-AGGCAAACCUGGGUG-GUUGGUAACUCAGAUUCCAA
AC091940.3/3034-2938         UAGGGUGACCAGCCAUUAUGGUUUGCCUGGGACUGA-----GG-AAUUUGCUGG----GAUA-UG--------------------------UCA-GUUCC-AGGCCAACCAGGCUG-GUUGGUCUCCCUGAAGCAAC
AACN011030071.1/202-108      UAGGGUAACCAACUGUCCCAGUUUGCCUGGGGCUCU-----UG-CAGUUCUGGA----A--U-UG--------------------------GAA-GCCCC-UGGCAAACAGAGCUG-GCUGGUCACCCUGGACCACU
AAGW02052704.1/266971-267071 UAAGAGGACGAACUAUCCUGGUUUGCCUGGAACUUU-----AC-UGGUGUUUGC----AUGA-GAAA----------------------UCCCA-GUCCC-CGGCAAUCCAGGAGA-GUUGGUCCUUUUACCACCUC
AAPE02003505.1/78976-78875   UAGGGUGACCAACCACUCCGGUUUGCCUGGGACAGGGAACUUU-CAGUAUUAAA----GCUA-GG--------------------------CCA-GUCCC-AGGCAAACUGGGAGA-GUGGGUCCCCAUAGGUCUAG
AAGU03087302.1/19644-19749   UAGGGGGGCCACCCAUCCCAGUUUGCCUGGGACUGA-----GG-GGUUUCCUGG----GAUG-CUAAUA-----------------CUGGGGCA-AUCCC-AGGCAAACCAGGAUA-GUUGGUCACCCUAUCGAGAG
AAQR03098083.1/1549-1453     UAGGGUGAUCAGCCAUCAGGGUUUGCCUGGAACUGU-----CCUAUGUCCUAGG----ACACUGG--------------------------ACA-GUUCC-AGACAAGCCAGGAAG-GCUGAUCAU--UGAUACCUC
#=GC SS_cons                 <<<<<<<<<<<<<<<---<<<<<<<<<<<<<<<<<<.....-<.-<<<______....>>>-.>-..........................>>>.>>>>>.>>>>>>>>>>--->>.>>>>>>>>>>>>>:::::::
#=GC RF                      uaGGgugACCAgCcgUCCcgGuUuGCCuGGgACuga.....gg.uguuucuugg....aaca.cg..........................uca.GUcCC.aGGCaAaCcgGGacg.GcUGGUcacCCuaaagcuaa
//
