INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-553 ACC RF00979 DESC microRNA mir-553 STATES 190 NODES 39 CLEN 62 W 77 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 21:47:41 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00979/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.777344 CKSUM 2158896466 NULL 0.000 0.000 0.000 0.000 GA 82.00 TC 82.40 NC 78.40 EFP7GF -9.7507 0.71927 ECMLC 0.60794 -5.15575 4.29090 1600000 374390 0.003205 ECMGC 0.49164 -13.33479 -0.29019 1600000 243947 0.001640 ECMLI 0.61855 -3.31122 5.44494 1600000 270003 0.004444 ECMGI 0.50373 -9.09857 2.52311 1600000 139470 0.002868 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 96 -6.884 -7.091 -0.056 -5.505 IL 1 1 2 1 4 1 5 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 5 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 5 77 97 -8.300 -0.019 -6.617 -1.377 -1.393 -2.105 1.586 D 4 2 3 5 3 0 0 76 95 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 3 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 62 - G - - MR 6 5 3 8 5 1 5 76 96 -7.042 -0.040 -6.857 -7.070 -7.961 -1.454 -2.654 1.693 -2.040 D 7 5 3 8 5 0 0 75 94 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 2 77 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 61 u g - - MP 9 8 3 13 6 2 6 75 95 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.972 -3.888 -3.701 -0.234 -2.497 -4.146 1.787 -3.258 -3.741 -0.021 -4.045 -1.893 0.955 -4.069 2.926 -2.618 ML 10 8 3 13 6 1 1 74 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 74 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 2 75 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 2 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 60 U A - - MP 15 14 6 19 6 2 5 73 93 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 16 14 6 19 6 1 1 72 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 72 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 70 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 2 73 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 2 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 59 u g - - MP 21 20 6 25 6 2 4 71 91 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.972 -3.888 -3.701 -0.234 -2.497 -4.146 1.787 -3.258 -3.741 -0.021 -4.045 -1.893 0.955 -4.069 2.926 -2.618 ML 22 20 6 25 6 1 1 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 2 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 58 A U - - MP 27 26 6 31 4 2 2 69 88 -6.884 -7.091 -0.056 -5.505 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 28 26 6 31 4 1 1 70 89 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 1 69 89 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 0 68 88 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 1 71 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 1 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - U - - - ML 33 32 6 35 3 1 1 67 86 -8.300 -0.019 -6.617 -1.377 -1.393 -2.105 1.586 D 34 32 6 35 3 0 0 65 85 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 1 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 57 - C - - MR 36 35 3 38 5 1 1 66 85 -7.042 -0.040 -6.857 -7.070 -7.961 -1.599 1.583 -2.418 -1.042 D 37 35 3 38 5 0 0 64 83 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 1 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 56 U A - - MP 39 38 3 43 6 2 2 65 84 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 40 38 3 43 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 55 u g - - MP 45 44 6 49 6 2 2 63 82 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.972 -3.888 -3.701 -0.234 -2.497 -4.146 1.787 -3.258 -3.741 -0.021 -4.045 -1.893 0.955 -4.069 2.926 -2.618 ML 46 44 6 49 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 54 u a - - MP 51 50 6 55 6 2 2 61 80 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -2.584 -2.593 -2.693 0.727 -2.298 -3.483 1.656 -2.780 -0.000 0.910 -3.244 -0.835 2.438 -2.865 -0.193 -1.777 ML 52 50 6 55 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 53 A U - - MP 57 56 6 61 6 2 2 59 78 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 58 56 6 61 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 52 A U - - MP 63 62 6 67 6 2 2 57 76 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 64 62 6 67 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 51 A U - - MP 69 68 6 73 6 2 2 55 74 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 70 68 6 73 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 50 A U - - MP 75 74 6 79 6 2 2 53 72 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 76 74 6 79 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 49 c g - - MP 81 80 6 85 6 2 2 51 70 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -1.931 -2.065 -0.393 0.979 -1.973 -2.928 2.217 -2.374 -2.163 1.032 -0.602 -0.582 1.258 -2.244 -0.092 -1.312 ML 82 80 6 85 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 48 G U - - MP 87 86 6 91 6 2 2 49 68 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.543 -2.340 -3.703 1.178 -4.359 -5.084 0.021 -3.737 -3.385 1.457 -3.903 3.002 -0.339 -4.308 -1.921 -2.419 ML 88 86 6 91 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 47 G C - - MP 93 92 6 97 6 2 2 47 66 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 94 92 6 97 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 46 c g - - MP 99 98 6 103 6 2 2 45 64 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -2.512 -2.555 -2.620 0.766 -2.195 -3.396 1.779 -2.698 -2.658 0.947 -3.173 -0.840 1.760 -2.782 1.323 0.140 ML 100 98 6 103 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 45 G C - - MP 105 104 6 109 6 2 2 43 62 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 106 104 6 109 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 44 A U - - MP 111 110 6 115 6 2 2 41 60 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 112 110 6 115 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 43 G C - - MP 117 116 6 121 6 2 2 39 58 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 118 116 6 121 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 42 a u - - MP 123 122 6 127 6 2 2 37 56 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.281 -2.369 -3.381 2.741 -3.871 -4.628 0.346 -3.567 -3.279 1.642 -3.824 1.311 0.079 -3.769 -1.545 -2.245 ML 124 122 6 127 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 41 U A - - MP 129 128 6 133 6 2 2 35 54 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 130 128 6 133 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 40 U A - - MP 135 134 6 139 6 2 2 33 52 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 136 134 6 139 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 39 U A - - MP 141 140 6 145 6 2 2 31 50 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 142 140 6 145 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 30 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 25 38 U A - - MP 147 146 6 151 4 2 2 29 48 -6.884 -7.091 -0.056 -5.505 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 148 146 6 151 4 1 1 29 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 31 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - G - - - ML 153 152 6 155 3 1 1 26 45 -8.300 -0.019 -6.617 -1.454 -2.654 1.693 -2.040 D 154 152 6 155 3 0 0 25 44 -5.620 -0.734 -1.403 IL 155 155 3 155 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 37 - G - - MR 156 155 3 158 5 1 1 25 44 -7.042 -0.040 -6.857 -7.070 -7.961 -1.454 -2.654 1.693 -2.040 D 157 155 3 158 5 0 0 24 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 27 36 U A - - MP 159 158 3 163 6 2 2 24 43 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.069 -3.891 -3.921 -0.194 -2.889 -4.496 1.436 -3.576 -3.927 0.078 -4.306 -1.793 3.267 -4.225 -0.568 -2.763 ML 160 158 3 163 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 28 35 u g - - MP 165 164 6 169 4 2 2 22 41 -6.884 -7.091 -0.056 -5.505 -3.972 -3.888 -3.701 -0.234 -2.497 -4.146 1.787 -3.258 -3.741 -0.021 -4.045 -1.893 0.955 -4.069 2.926 -2.618 ML 166 164 6 169 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - U - - - ML 171 170 6 173 3 1 1 19 37 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 172 170 6 173 3 0 0 18 37 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - U - - - ML 174 173 3 176 3 1 1 18 36 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 175 173 3 176 3 0 0 17 36 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - G - - - ML 177 176 3 179 3 1 1 16 35 -7.905 -0.021 -6.559 -1.454 -2.654 1.693 -2.040 D 178 176 3 179 3 0 0 16 34 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - U - - - ML 180 179 3 182 3 1 1 15 33 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - C - - - ML 183 182 3 185 3 1 1 13 32 -7.905 -0.021 -6.559 -1.599 1.583 -2.418 -1.042 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 34 - U - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 -1.377 -1.393 -2.105 1.586 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-553 ACC RF00979 DESC microRNA mir-553 LENG 62 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 21:47:41 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00979/CM NSEQ 4 EFFN 2.699219 CKSUM 2158896466 STATS LOCAL MSV -8.0931 0.71927 STATS LOCAL VITERBI -8.8095 0.71927 STATS LOCAL FORWARD -3.7316 0.71927 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.47375 1.83339 1.38846 1.01720 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 0.00000 * 1 2.76653 2.70412 3.28978 0.18281 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 2 3.09330 1.65933 2.90215 0.34323 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 3 3.16617 2.04817 2.93452 0.25398 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 4 3.09142 1.65932 2.90123 0.34342 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 5 0.27947 2.97904 1.97998 2.90219 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 6 2.76653 2.70412 3.28978 0.18281 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 7 3.16221 2.04788 2.93266 0.25437 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 8 3.09013 1.65932 2.90060 0.34355 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 9 2.18704 1.58525 1.51285 0.77095 9 u - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 10 0.27957 2.97857 1.97987 2.90153 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 11 0.27966 2.97814 1.97978 2.90093 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 12 0.27975 2.97772 1.97969 2.90034 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 13 0.27982 2.97734 1.97961 2.89982 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 14 1.55136 1.12321 1.48443 1.44318 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 15 1.99591 3.06481 0.26974 2.92123 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 16 2.68978 3.40361 0.14685 3.34034 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 17 2.12710 1.50719 1.95419 0.65854 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 18 2.68931 3.40301 0.14694 3.33952 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 19 0.28009 2.97604 1.97934 2.89801 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 20 2.68899 3.40261 0.14700 3.33897 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 21 0.64810 2.80931 1.06696 2.62189 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 22 3.15558 2.04740 2.92953 0.25503 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 23 3.15543 2.04739 2.92947 0.25504 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 24 3.15532 2.04738 2.92941 0.25506 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 25 3.15522 2.04737 2.92937 0.25506 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 26 2.86876 3.76862 0.12237 3.34311 26 G - - - 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 27 3.16034 2.04775 2.93178 0.25456 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 28 3.08913 1.65932 2.90010 0.34366 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 29 2.76653 2.70412 3.28978 0.18281 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 30 2.76653 2.70412 3.28978 0.18281 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 31 2.86876 3.76862 0.12237 3.34311 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 32 2.76653 2.70412 3.28978 0.18281 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 33 3.04713 0.16509 3.62256 2.55134 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 34 2.76653 2.70412 3.28978 0.18281 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 35 2.22235 3.08381 0.23956 2.83209 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 36 0.28737 3.12653 1.88548 2.91619 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 37 2.86876 3.76862 0.12237 3.34311 37 G - - - 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 38 0.28920 3.11578 1.88406 2.90365 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 39 0.28919 3.11584 1.88407 2.90372 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 40 0.28918 3.11591 1.88408 2.90380 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 41 0.28916 3.11599 1.88409 2.90390 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 42 2.83313 1.81236 2.60622 0.35085 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 43 3.52879 0.17491 3.24013 2.38628 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 44 3.11915 2.29241 2.78577 0.23181 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 45 3.52983 0.17483 3.24061 2.38648 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 46 1.38245 2.12035 0.89303 1.51579 46 g - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 47 3.53138 0.17471 3.24132 2.38677 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 48 3.12554 2.04521 2.85969 0.26208 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 49 1.67066 1.91445 0.73800 1.67994 49 g - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 50 3.12295 2.29295 2.78730 0.23141 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 51 3.12420 2.29312 2.78781 0.23128 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 52 3.12578 2.29335 2.78845 0.23111 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 53 3.12781 2.29363 2.78927 0.23090 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 54 0.68466 2.17588 1.41127 1.97766 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 55 2.22252 3.08407 0.23950 2.83238 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 56 0.28731 3.12687 1.88553 2.91659 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 57 3.04713 0.16509 3.62256 2.55134 57 C - - - 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 58 3.12870 2.29376 2.78962 0.23081 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 59 2.22174 3.08282 0.23979 2.83099 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 60 0.28764 3.12493 1.88527 2.91432 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 61 2.22458 3.08740 0.23875 2.83608 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.04209 3.88205 3.88205 1.46634 0.26236 1.09861 0.40547 62 2.86876 3.76862 0.12237 3.34311 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.02127 3.86122 * 1.46634 0.26236 0.00000 * //