INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1829 ACC RF00955 DESC microRNA mir-1829 STATES 178 NODES 37 CLEN 58 W 73 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 19:23:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00955/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.503906 CKSUM 3596273269 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 62.70 NC 45.60 EFP7GF -10.2956 0.71932 ECMLC 0.61714 -5.16113 4.25423 1600000 400570 0.002996 ECMGC 0.42835 -15.17574 -0.36914 1600000 227258 0.001760 ECMLI 0.63365 -3.12595 5.46440 1600000 277444 0.004325 ECMGI 0.45881 -10.47906 2.41121 1600000 148099 0.002701 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 73 93 -7.166 -7.373 -0.046 -5.787 IL 1 1 2 1 4 1 7 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 6 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 7 73 93 -8.546 -0.016 -6.863 1.794 -2.785 -2.376 -2.369 D 4 2 3 5 3 0 1 72 91 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 5 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 58 - A - - MR 6 5 3 8 5 1 7 72 92 -7.273 -0.034 -7.088 -7.300 -8.192 1.794 -2.785 -2.376 -2.369 D 7 5 3 8 5 0 0 71 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 3 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 57 A U - - MP 9 8 3 13 6 2 8 71 91 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -4.171 -3.111 -4.156 3.531 -4.692 -5.798 -0.366 -4.172 -4.039 0.667 -4.605 -0.530 -0.782 -4.917 -2.306 -2.972 ML 10 8 3 13 6 1 2 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 2 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 3 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 3 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 56 G C - - MP 15 14 6 19 6 2 7 69 89 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -5.142 -3.287 -5.290 -0.074 -5.794 -4.846 -1.059 -5.553 -4.579 3.721 -4.889 -1.005 -1.434 -4.727 -3.119 -4.161 ML 16 14 6 19 6 1 2 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 2 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 3 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 3 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 55 a u - - MP 21 20 6 25 6 2 7 67 87 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -2.763 -2.309 -2.925 1.855 -3.041 -3.908 0.764 1.472 -2.877 1.274 -3.416 1.198 0.508 -3.169 -0.981 -1.952 ML 22 20 6 25 6 1 2 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 2 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 2 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 3 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 54 G C - - MP 27 26 6 31 6 2 6 65 85 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -5.142 -3.287 -5.290 -0.074 -5.794 -4.846 -1.059 -5.553 -4.579 3.721 -4.889 -1.005 -1.434 -4.727 -3.119 -4.161 ML 28 26 6 31 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 2 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 2 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 53 a u - - MP 33 32 6 37 6 2 5 63 83 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -2.625 -2.239 -2.786 2.175 -2.882 -3.706 0.863 0.565 -2.771 1.381 -3.300 1.077 0.620 -2.985 -0.852 -1.852 ML 34 32 6 37 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 2 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 52 a u - - MP 39 38 6 43 4 2 3 61 81 -7.166 -7.373 -0.046 -5.787 -2.822 -2.288 -2.962 2.257 -3.178 -3.917 0.654 -3.228 -2.952 1.545 -3.474 1.246 0.419 -3.170 -1.087 0.548 ML 40 38 6 43 4 1 1 62 81 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 1 61 81 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 0 60 80 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 2 63 83 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 1 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - c - - - ML 45 44 6 47 3 1 2 59 78 -8.546 -0.016 -6.863 -0.058 0.989 -1.560 -0.482 D 46 44 6 47 3 0 0 58 77 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 1 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 51 - U - - MR 48 47 3 50 5 1 1 58 77 -7.273 -0.034 -7.088 -7.300 -8.192 -1.870 -1.800 -2.621 1.712 D 49 47 3 50 5 0 0 56 76 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 50 U A - - MP 51 50 3 55 6 2 2 57 76 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -4.690 -4.524 -4.471 -0.786 -3.312 -4.988 1.024 -4.040 -4.471 -0.596 -4.819 -2.407 3.522 -4.819 -0.976 -3.239 ML 52 50 3 55 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 49 U A - - MP 57 56 6 61 6 2 2 55 74 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -4.690 -4.524 -4.471 -0.786 -3.312 -4.988 1.024 -4.040 -4.471 -0.596 -4.819 -2.407 3.522 -4.819 -0.976 -3.239 ML 58 56 6 61 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 48 c g - - MP 63 62 6 67 6 2 2 53 72 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -3.613 -3.272 -3.574 0.457 -2.794 -4.267 2.780 -3.375 -3.576 1.799 -4.015 -1.092 1.071 -3.768 -0.427 -2.435 ML 64 62 6 67 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 47 u g - - MP 69 68 6 73 6 2 2 51 70 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -2.968 -3.030 0.691 0.258 -2.420 -3.702 1.556 -2.992 -3.057 0.375 -3.525 -1.344 0.963 -3.219 2.439 -2.101 ML 70 68 6 73 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 49 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 46 A U - - MP 75 74 6 79 6 2 2 49 68 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -4.171 -3.111 -4.156 3.531 -4.692 -5.798 -0.366 -4.172 -4.039 0.667 -4.605 -0.530 -0.782 -4.917 -2.306 -2.972 ML 76 74 6 79 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 45 G C - - MP 81 80 6 85 4 2 2 47 66 -7.166 -7.373 -0.046 -5.787 -4.071 -2.763 -4.074 1.509 -4.737 -4.606 -0.129 -4.441 -4.007 3.295 -4.396 -0.390 -0.428 -4.025 -2.123 -2.969 ML 82 80 6 85 4 1 1 47 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 47 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 46 65 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 1 49 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - u - - - ML 87 86 6 89 5 1 1 44 63 -7.273 -0.034 -7.088 -7.300 -8.192 0.529 -0.942 -1.168 0.671 D 88 86 6 89 5 0 0 43 62 -4.959 -0.803 -4.221 -2.596 -2.508 IL 89 89 3 89 5 1 1 45 64 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 44 u a - - MP 90 89 3 94 6 2 2 43 62 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -2.808 -2.824 -2.897 0.527 -2.426 -3.672 1.573 -2.937 0.556 0.655 -3.433 -1.047 2.576 -3.089 -0.298 -1.968 ML 91 89 3 94 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 43 G C - - MP 96 95 6 100 6 2 2 41 60 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -4.075 0.414 -4.110 0.625 -4.743 -4.492 -0.278 -4.519 -4.006 3.344 -4.380 -0.491 -0.551 -3.977 -2.219 -3.060 ML 97 95 6 100 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 42 G C - - MP 102 101 6 106 6 2 2 39 58 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -3.687 -2.675 -3.707 0.734 -4.077 -4.156 0.200 -4.126 -3.750 3.246 -4.128 -0.475 -0.096 -0.040 -1.693 -2.736 ML 103 101 6 106 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 41 U A - - MP 108 107 6 112 6 2 2 37 56 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -4.690 -4.524 -4.471 -0.786 -3.312 -4.988 1.024 -4.040 -4.471 -0.596 -4.819 -2.407 3.522 -4.819 -0.976 -3.239 ML 109 107 6 112 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 40 U A - - MP 114 113 6 118 6 2 2 35 54 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -4.690 -4.524 -4.471 -0.786 -3.312 -4.988 1.024 -4.040 -4.471 -0.596 -4.819 -2.407 3.522 -4.819 -0.976 -3.239 ML 115 113 6 118 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 39 G C - - MP 120 119 6 124 6 2 2 33 52 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -5.142 -3.287 -5.290 -0.074 -5.794 -4.846 -1.059 -5.553 -4.579 3.721 -4.889 -1.005 -1.434 -4.727 -3.119 -4.161 ML 121 119 6 124 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 38 U A - - MP 126 125 6 130 6 2 2 31 50 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -4.690 -4.524 -4.471 -0.786 -3.312 -4.988 1.024 -4.040 -4.471 -0.596 -4.819 -2.407 3.522 -4.819 -0.976 -3.239 ML 127 125 6 130 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 37 a u - - MP 132 131 6 136 6 2 2 29 48 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -3.365 -2.934 -3.382 2.489 -2.928 -4.188 2.027 -3.354 -3.394 1.152 -3.865 -0.739 0.837 -3.601 -0.632 -2.315 ML 133 131 6 136 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 36 a u - - MP 138 137 6 142 4 2 2 27 46 -7.166 -7.373 -0.046 -5.787 -3.221 0.846 -3.342 2.849 -3.778 -4.503 0.194 -3.576 -3.271 1.455 -3.817 -0.087 -0.037 -3.678 -1.590 -2.278 ML 139 137 6 142 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 29 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - A - - - ML 144 143 6 146 3 1 1 25 43 -8.546 -0.016 -6.863 1.794 -2.785 -2.376 -2.369 D 145 143 6 146 3 0 0 23 42 -5.620 -0.734 -1.403 IL 146 146 3 146 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 35 - A - - MR 147 146 3 149 5 1 1 24 42 -7.273 -0.034 -7.088 -7.300 -8.192 1.794 -2.785 -2.376 -2.369 D 148 146 3 149 5 0 0 22 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 149 149 3 149 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 26 34 A U - - MP 150 149 3 154 6 2 2 23 41 -9.195 -9.134 -0.020 -7.910 -8.190 -8.585 -4.171 -3.111 -4.156 3.531 -4.692 -5.798 -0.366 -4.172 -4.039 0.667 -4.605 -0.530 -0.782 -4.917 -2.306 -2.972 ML 151 149 3 154 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 3 154 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 3 154 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 27 33 c g - - MP 156 155 6 160 4 2 2 21 39 -7.166 -7.373 -0.046 -5.787 -3.283 -3.288 1.814 0.123 -2.530 -3.914 2.603 -3.149 -3.311 0.318 -3.746 -1.491 0.928 -3.499 -0.341 -2.304 ML 157 155 6 160 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 28 - A - - - ML 162 161 6 164 3 1 1 17 36 -8.168 -0.018 -6.822 1.794 -2.785 -2.376 -2.369 D 163 161 6 164 3 0 0 17 36 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - U - - - ML 165 164 3 167 3 1 1 16 35 -8.168 -0.018 -6.822 -1.870 -1.800 -2.621 1.712 D 166 164 3 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - C - - - ML 168 167 3 170 3 1 1 15 33 -8.168 -0.018 -6.822 -1.038 1.045 -1.871 0.234 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - G - - - ML 171 170 3 173 3 1 1 13 31 -8.168 -0.018 -6.822 -2.010 -3.291 1.805 -2.679 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - A - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 1.794 -2.785 -2.376 -2.369 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1829 ACC RF00955 DESC microRNA mir-1829 LENG 58 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 19:23:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00955/CM NSEQ 4 EFFN 3.824219 CKSUM 3596273269 STATS LOCAL MSV -7.8040 0.71932 STATS LOCAL VITERBI -8.3291 0.71932 STATS LOCAL FORWARD -3.6989 0.71932 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.16249 1.65468 1.54057 1.26628 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 0.00000 * 1 0.08191 3.83893 3.50942 3.60389 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 2 0.16442 3.55150 2.39600 3.44679 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 3 2.98624 3.83396 0.09980 3.77730 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 4 1.27364 1.09710 1.18408 2.52173 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 5 2.98276 3.82889 0.10029 3.77044 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 6 0.98623 1.50789 1.17593 2.33190 6 a - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 7 0.94944 2.63067 1.09160 1.58314 7 a - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 8 1.48971 0.56861 2.76326 1.92988 8 C - - - 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 9 3.72857 2.49546 3.55119 0.14523 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 10 3.72683 2.49528 3.55026 0.14533 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 11 2.49511 0.68702 1.38409 1.80856 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 12 1.62083 1.83321 2.77793 0.54439 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 13 0.16531 3.54331 2.39397 3.43617 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 14 1.61602 3.02913 0.36042 2.89007 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 15 0.98036 2.19469 2.34918 0.87231 15 u - - - 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 16 2.51413 1.75394 1.46712 0.66284 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 17 1.67913 3.25956 0.31341 3.12117 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 18 2.36903 2.94249 0.33491 1.97838 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 19 3.71975 2.49452 3.54647 0.14572 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 20 3.71745 2.49427 3.54524 0.14585 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 21 2.97910 3.82358 0.10081 3.76325 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 22 3.71421 2.49392 3.54350 0.14603 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 23 0.79806 1.27086 2.00417 2.00666 23 a - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 24 0.31678 3.08375 1.77846 2.86776 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 25 0.08191 3.83893 3.50942 3.60389 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 26 0.16494 3.54674 2.39482 3.44061 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 27 1.01991 0.81304 2.79625 2.00378 27 c - - < 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 28 0.08191 3.83893 3.50942 3.60389 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 29 3.18580 3.05605 3.72058 0.11950 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 30 2.39798 0.55136 3.01153 1.25979 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 31 3.28936 4.23505 0.07710 3.79682 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 32 0.08191 3.83893 3.50942 3.60389 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 33 2.28645 2.97068 0.24409 2.75379 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 34 3.67886 2.76093 3.36158 0.13144 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 35 0.08191 3.83893 3.50942 3.60389 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 36 3.07400 1.29779 2.87337 0.47141 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 37 2.25449 2.20358 1.18098 0.73880 37 u - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 38 0.16591 3.73636 2.32856 3.45466 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 39 3.92401 0.12168 3.67234 2.66796 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 40 0.16581 3.73743 2.32875 3.45580 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 41 0.16580 3.73762 2.32878 3.45599 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 42 3.06225 0.26596 2.76071 2.09147 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 43 3.33217 0.21909 3.07386 2.16459 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 44 0.48966 2.51994 1.58439 2.28641 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 45 3.12440 0.40910 2.84387 1.45420 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 46 3.65221 2.75629 3.34946 0.13303 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 47 2.29700 2.95619 0.24769 2.70571 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 48 2.05747 1.46323 0.62563 2.24612 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 49 0.16459 3.75149 2.33123 3.47068 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 50 0.16401 3.75811 2.33239 3.47770 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 51 3.18580 3.05605 3.72058 0.11950 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 52 2.65873 1.88858 2.42790 0.37041 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 53 2.54912 1.96151 2.30581 0.38342 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 54 3.94116 0.12082 3.68083 2.67112 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 55 2.73716 2.09061 2.49376 0.31603 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 56 3.95938 0.11991 3.68977 2.67443 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 57 3.68251 2.76156 3.36323 0.13122 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.03426 4.08400 4.08400 1.46634 0.26236 1.09861 0.40547 58 0.08191 3.83893 3.50942 3.60389 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.01728 4.06702 * 1.46634 0.26236 0.00000 * //