# STOCKHOLM 1.0
#=GF ID mir-1224
#=GF AC RF00942
#=GF DE mir-1224 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 105.0
#=GF NC 104.9
#=GF TC 105.2
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000440;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 16954537
#=GF RT Many novel mammalian microRNA candidates identified by extensive cloning
#=GF RT and RAKE analysis.
#=GF RA Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J,
#=GF RA Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano
#=GF RA H, Plasterk R, Cuppen E
#=GF RL Genome Res. 2006;16:1289-1298.
#=GF RN [2]
#=GF RM 17964270
#=GF RT Mammalian mirtron genes.
#=GF RA Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC
#=GF RL Mol Cell. 2007;28:328-336.
#=GF RN [3]
#=GF RM 19758457
#=GF RT Characterization of bovine miRNAs by sequencing and bioinformatics
#=GF RT analysis.
#=GF RA Jin W, Grant JR, Stothard P, Moore SS, Guan LL
#=GF RL BMC Mol Biol. 2009;10:90.
#=GF RN [4]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF WK MicroRNA
#=GF SQ 9

URS00006378D3_9606/1-85  --GUGAGGACUCGGGAGGUGGAGGGUGGUGCCGCCGGGGCC-GGGCGCUGUUUCAGCUCGCUUCUCCCCCCACCUCCUCUCUCCUCAG--
URS00006378D3_9598/1-85  --GUGAGGACUCGGGAGGUGGAGGGUGGUGCCGCCGGGGCC-GGGCGCUGUUUCAGCUCGCUUCUCCCCCCACCUCCUCUCUCCUCAG--
URS000067D262_9600/1-85  --GUGAGGACUCGGGAGGUGGAGGGUGGCGCCGCCGGGGCC-GGGCGCUGUCUCAGCUCGCUUCUCCCCCCACCUCCUCUCUCCUCAG--
URS0000710AB5_9544/1-85  --GUGAGGACUCGGGAGGUGGAGGGUGGCGCCGCCGGGGCC-AGGCGCUGUCUAAGCUCGCUUCUCCCCCCACCUCCUCUCUCCUCAG--
URS0000634618_9913/1-86  --GUGAGGACUCGGGAGGUGGAGGGUGGCGCUGCCAGGGCCAGGGCACUGUCUCAGCUCGCUUCUCCCCCCACCUCCUCUCUCCUCAG--
URS00007E5006_9823/9-98  UGGUGAGGACUCGGGAGGUGGAGGGUGGCGCUGCCAGGGCCAGGGCACUGUCUCAGCUCGCUUCUCCCCCCACCUCCUCUCUCCUCAGGU
URS00007E4B4C_9925/5-94  UGGUGAGGACUCGGGAGGUGGAGGGUGGUGCUGCCAGGGCCAGGGCGCCGCCUCAGCUCGCUUCUCCCCCCACCUCCUCUCUCCUCAGGU
URS0000628581_10090/1-85 --GUGAGGACUGGGGAGGUGGAGGGUAGCAUCAUUAGAGCCAGAGCUCUGUCUCAGCUC-CCUCUCCCCCCACCUCUUCUCUCCUCAG--
URS0000633B7D_10116/1-85 --GUGAGGACUGGGGAGGUGGAGGGUAGUACCAUUAGAGCCAGAGCUCUGUCUCAGCUC-CCUCUCCCCCCACCUCUUCUCUCCUCAG--
#=GC SS_cons             ..:<<<<<<---<<<<<<<<<<<<<-<<<-----<<<-<<____>>->>>----->>>>->>>------>>>>>>>>>--->>>>>>:..
#=GC RF                  ..GuGaGGaCUcgGGaGGuGGagGGUgGcgccgccgGgGCCAGgGCgCcgUcUcAgCcCGCcuCUCCCCCCaCCuCCuCUCuCCuCaG..
//
