INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-255 ACC RF00900 DESC microRNA mir-255 STATES 181 NODES 37 CLEN 59 W 73 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 11:27:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00900/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.387695 CKSUM 4247341162 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 51.70 NC 49.80 EFP7GF -9.8207 0.71947 ECMLC 0.61277 -4.78862 4.37639 1600000 329766 0.003639 ECMGC 0.44656 -14.60455 -0.86877 1600000 184486 0.002168 ECMLI 0.58189 -4.00061 5.28796 1600000 266991 0.004495 ECMGI 0.47052 -10.45453 1.95981 1600000 137682 0.002905 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 73 93 -7.027 -8.273 -0.072 -4.726 IL 1 1 2 1 4 1 1 75 94 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 2 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 59 - G - - MR 3 2 3 5 3 1 3 74 93 -8.509 -0.017 -6.827 -1.929 -3.200 1.792 -2.588 D 4 2 3 5 3 0 0 72 91 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 2 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 58 - A - - MR 6 5 3 8 5 1 3 73 92 -7.238 -0.035 -7.054 -7.266 -8.157 1.782 -2.706 -2.304 -2.282 D 7 5 3 8 5 0 0 71 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 1 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 57 G C - - MP 9 8 3 13 6 2 4 72 91 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -5.067 -3.251 -5.204 -0.021 -5.689 -4.818 -0.973 -5.464 -4.533 3.707 -4.848 -0.964 -1.349 -4.679 -3.028 -4.075 ML 10 8 3 13 6 1 1 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 56 U A - - MP 15 14 6 19 6 2 4 69 89 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -4.589 -4.422 -4.382 -0.691 -3.243 -4.909 1.092 -3.965 -4.384 -0.489 -4.737 -2.308 3.489 -4.724 -0.909 -3.164 ML 16 14 6 19 6 1 1 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 55 A U - - MP 21 20 6 25 6 2 4 67 87 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -4.097 -3.053 -4.089 3.498 -4.585 -5.680 -0.264 -4.110 -3.972 0.748 -4.535 -0.483 -0.680 -4.814 -2.203 -2.908 ML 22 20 6 25 6 1 1 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 54 a u - - MP 27 26 6 31 6 2 4 65 85 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -3.557 -2.555 -3.662 3.000 -4.342 -5.088 -0.094 -3.834 -3.515 1.362 -4.080 1.369 -0.334 -4.156 -1.980 -2.485 ML 28 26 6 31 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 53 g u - - MP 33 32 6 37 6 2 3 63 83 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -2.862 -1.446 -3.434 0.966 -3.741 -3.456 0.404 -3.298 -2.720 1.263 0.587 2.620 -0.043 -3.380 -1.463 -2.117 ML 34 32 6 37 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 52 A U - - MP 39 38 6 43 6 2 3 61 81 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -4.097 -3.053 -4.089 3.498 -4.585 -5.680 -0.264 -4.110 -3.972 0.748 -4.535 -0.483 -0.680 -4.814 -2.203 -2.908 ML 40 38 6 43 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 51 A U - - MP 45 44 6 49 6 2 3 59 79 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -4.097 -3.053 -4.089 3.498 -4.585 -5.680 -0.264 -4.110 -3.972 0.748 -4.535 -0.483 -0.680 -4.814 -2.203 -2.908 ML 46 44 6 49 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 50 A U - - MP 51 50 6 55 6 2 2 57 77 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -4.097 -3.053 -4.089 3.498 -4.585 -5.680 -0.264 -4.110 -3.972 0.748 -4.535 -0.483 -0.680 -4.814 -2.203 -2.908 ML 52 50 6 55 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 49 U A - - MP 57 56 6 61 6 2 2 55 75 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -4.589 -4.422 -4.382 -0.691 -3.243 -4.909 1.092 -3.965 -4.384 -0.489 -4.737 -2.308 3.489 -4.724 -0.909 -3.164 ML 58 56 6 61 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 48 C G - - MP 63 62 6 67 6 2 2 53 73 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -4.913 -4.850 -4.540 -1.052 -3.183 -4.904 3.649 -4.029 -4.603 -0.858 -4.823 -2.803 0.292 -4.957 -0.900 -3.431 ML 64 62 6 67 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 47 U A - - MP 69 68 6 73 6 2 2 51 71 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -4.589 -4.422 -4.382 -0.691 -3.243 -4.909 1.092 -3.965 -4.384 -0.489 -4.737 -2.308 3.489 -4.724 -0.909 -3.164 ML 70 68 6 73 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 46 u g - - MP 75 74 6 79 6 2 2 49 69 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -2.902 -2.945 -2.954 0.350 -2.394 -3.669 1.586 -2.950 0.503 0.448 -3.471 -1.231 1.018 -3.166 2.394 -2.042 ML 76 74 6 79 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 45 u a - - MP 81 80 6 85 4 2 2 47 67 -7.124 -7.331 -0.047 -5.746 -2.818 -2.833 -2.910 0.523 -2.446 -3.689 1.558 -2.954 0.170 0.662 -3.449 -1.054 2.669 -3.097 -0.315 -1.975 ML 82 80 6 85 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 48 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 47 66 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 1 50 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - G - - - ML 87 86 6 89 3 1 1 45 64 -8.509 -0.017 -6.827 -0.729 -1.512 1.165 -0.315 D 88 86 6 89 3 0 0 44 63 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 44 - A - - MR 90 89 3 92 5 1 1 44 63 -7.238 -0.035 -7.054 -7.266 -8.157 1.782 -2.706 -2.304 -2.282 D 91 89 3 92 5 0 0 43 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 43 U G - - MP 93 92 3 97 6 2 2 43 62 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -4.434 -4.367 -4.057 -0.670 -2.715 -4.426 1.579 -3.518 -4.101 -0.534 -4.358 -2.358 0.684 -4.485 3.197 -2.955 ML 94 92 3 97 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 43 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 42 a u - - MP 99 98 6 103 6 2 2 41 60 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -3.526 -2.504 -3.642 2.735 -4.342 -5.042 -0.091 -3.818 -3.482 1.409 -4.040 1.930 -0.326 -4.122 -1.974 -2.458 ML 100 98 6 103 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 41 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 41 G C - - MP 105 104 6 109 6 2 2 39 58 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -5.067 -3.251 -5.204 -0.021 -5.689 -4.818 -0.973 -5.464 -4.533 3.707 -4.848 -0.964 -1.349 -4.679 -3.028 -4.075 ML 106 104 6 109 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 40 U A - - MP 111 110 6 115 6 2 2 37 56 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -4.589 -4.422 -4.382 -0.691 -3.243 -4.909 1.092 -3.965 -4.384 -0.489 -4.737 -2.308 3.489 -4.724 -0.909 -3.164 ML 112 110 6 115 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 39 U A - - MP 117 116 6 121 6 2 2 35 54 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -4.589 -4.422 -4.382 -0.691 -3.243 -4.909 1.092 -3.965 -4.384 -0.489 -4.737 -2.308 3.489 -4.724 -0.909 -3.164 ML 118 116 6 121 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 38 u a - - MP 123 122 6 127 6 2 2 33 52 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -3.365 -3.414 -3.351 0.111 0.320 -4.007 1.671 -3.178 -3.376 0.237 -3.822 -1.594 2.858 -3.577 -0.295 -2.333 ML 124 122 6 127 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 37 U A - - MP 129 128 6 133 6 2 2 31 50 -9.177 -9.117 -0.104 -4.061 -8.173 -8.568 -4.589 -4.422 -4.382 -0.691 -3.243 -4.909 1.092 -3.965 -4.384 -0.489 -4.737 -2.308 3.489 -4.724 -0.909 -3.164 ML 130 128 6 133 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 36 C G - - MP 135 134 6 139 4 2 2 29 48 -6.833 -8.079 -0.083 -4.532 -4.491 -4.391 -4.190 -0.629 -2.921 -4.610 3.533 -3.725 -4.238 -0.380 -4.505 -2.338 0.599 -4.564 -0.626 -3.080 ML 136 134 6 139 4 1 1 28 47 -3.814 -5.937 -0.365 -2.878 -0.365 0.860 -1.096 -0.088 MR 137 134 6 139 4 1 1 28 47 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 26 45 -12.737 -14.007 -2.036 -0.404 IL 139 139 5 139 4 1 1 28 47 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 35 - u - - MR 141 140 6 143 5 1 1 27 46 -7.238 -0.035 -7.054 -7.266 -8.157 -0.102 -0.278 -1.230 0.862 D 142 140 6 143 5 0 0 26 44 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 34 C G - - MP 144 143 3 148 6 2 2 26 45 -9.177 -9.117 -0.020 -7.893 -8.173 -8.568 -4.913 -4.850 -4.540 -1.052 -3.183 -4.904 3.649 -4.029 -4.603 -0.858 -4.823 -2.803 0.292 -4.957 -0.900 -3.431 ML 145 143 3 148 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 33 G C - - MP 150 149 6 154 6 2 2 24 43 -9.177 -9.117 -0.104 -4.061 -8.173 -8.568 -5.067 -3.251 -5.204 -0.021 -5.689 -4.818 -0.973 -5.464 -4.533 3.707 -4.848 -0.964 -1.349 -4.679 -3.028 -4.075 ML 151 149 6 154 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 32 u a - - MP 156 155 6 160 4 2 2 22 41 -6.914 -7.121 -0.054 -5.535 -3.065 -3.115 -3.082 0.363 0.383 -3.770 1.809 -2.969 -3.110 0.500 -3.575 -1.321 2.607 -3.292 -0.139 -2.091 ML 157 155 6 160 4 1 1 22 41 -4.417 -4.599 -0.300 -3.329 -0.365 0.860 -1.096 -0.088 MR 158 155 6 160 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - a - - - ML 162 161 6 164 3 1 1 19 37 -8.129 -0.018 -6.783 0.492 -1.004 0.158 -0.030 D 163 161 6 164 3 0 0 18 37 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - a - - - ML 165 164 3 167 3 1 1 17 36 -8.129 -0.018 -6.783 0.413 -0.868 -0.277 0.374 D 166 164 3 167 3 0 0 17 36 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - U - - - ML 168 167 3 170 3 1 1 16 35 -8.129 -0.018 -6.783 -0.688 -1.027 -0.658 1.173 D 169 167 3 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - u - - - ML 171 170 3 173 3 1 1 15 33 -8.129 -0.018 -6.783 -0.478 -0.982 0.054 0.797 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - a - - - ML 174 173 3 176 3 1 1 13 31 -8.129 -0.018 -6.783 0.366 0.194 -1.115 0.144 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - g - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 0.473 -1.621 0.848 -1.036 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-255 ACC RF00900 DESC microRNA mir-255 LENG 59 MAXL 139 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 11:27:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00900/CM NSEQ 5 EFFN 3.549805 CKSUM 4247341162 STATS LOCAL MSV -7.7524 0.71947 STATS LOCAL VITERBI -8.6849 0.71947 STATS LOCAL FORWARD -3.4143 0.71947 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26665 1.77896 1.39795 1.19631 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 0.00000 * 1 2.91422 3.73278 0.10940 3.67068 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 2 3.59105 2.38887 3.40558 0.16545 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 3 0.18523 3.41873 2.30117 3.31894 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 4 0.50765 3.20872 1.18124 2.98016 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 5 2.04454 2.80552 0.28783 2.81011 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 6 0.18540 3.41738 2.30084 3.31717 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 7 0.18547 3.41686 2.30072 3.31649 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 8 0.18552 3.41641 2.30061 3.31589 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 9 3.58580 2.38834 3.40283 0.16579 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 10 3.72011 0.14169 3.55878 2.53323 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 11 3.58447 2.38820 3.40214 0.16587 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 12 2.76607 1.78431 1.61875 0.56031 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 13 2.42844 1.71463 1.59362 0.63751 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 14 2.12769 2.69251 0.46382 1.69119 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 15 3.37327 1.83965 3.21999 0.26541 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 16 0.69287 3.21585 0.89371 2.98370 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 17 2.91804 3.73818 0.10882 3.67801 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 18 3.59350 2.38912 3.40686 0.16530 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 19 3.59169 2.38894 3.40592 0.16541 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 20 2.79872 1.26624 2.62217 0.53687 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 21 3.58862 2.38863 3.40431 0.16561 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 22 3.17731 0.21976 3.11906 2.19472 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 23 3.67909 0.14434 3.53627 2.52524 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 24 2.90575 3.72081 0.11070 3.65451 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 25 2.46677 1.09249 2.35531 0.72382 25 u - - < 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 26 1.02768 2.19248 1.23076 1.43359 26 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 27 1.08216 2.08537 1.57155 1.11123 27 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 28 2.07974 2.29751 1.88824 0.47290 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 29 1.87038 2.22257 1.30326 0.76365 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 30 1.11775 1.19059 2.28365 1.32038 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 31 1.03848 2.76933 0.71176 2.38027 31 g - - _ 1.38629 1.38629 1.38629 1.38629 0.19085 4.04151 1.85681 1.46634 0.26236 1.09861 0.40547 32 0.56774 2.50949 1.37775 2.30519 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.04165 3.89231 3.89231 1.46634 0.26236 0.20296 1.69451 33 3.84944 0.13102 3.58411 2.60712 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 34 2.81874 3.73316 0.12074 3.50196 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 35 1.49314 1.58678 2.36865 0.73994 35 u - - - 1.38629 1.38629 1.38629 1.38629 0.19085 4.04151 1.85681 1.46634 0.26236 1.09861 0.40547 36 2.53613 3.35132 0.17099 3.14745 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.04165 3.89231 3.89231 1.46634 0.26236 0.20296 1.69451 37 0.18794 3.59686 2.22407 3.33097 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 38 0.43772 2.78795 1.52852 2.57585 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 39 0.18767 3.59951 2.22453 3.33383 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 40 0.18747 3.60147 2.22486 3.33594 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 41 3.85970 0.13046 3.58909 2.60901 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 42 3.19495 2.06357 3.00635 0.24519 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 43 2.43373 3.41331 0.18029 3.11607 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 44 0.09048 3.74396 3.42201 3.49986 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 45 0.52887 2.43399 1.54433 2.21101 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 46 1.45133 2.79668 0.46865 2.53977 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 47 0.18825 3.59387 2.22356 3.32774 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 48 2.81223 3.72284 0.12186 3.49041 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 49 0.18815 3.59481 2.22372 3.32876 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 50 3.53011 2.65233 3.22257 0.15041 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 51 3.53148 2.65256 3.22318 0.15031 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 52 3.53320 2.65285 3.22396 0.15019 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 53 2.99550 2.05608 1.62335 0.47033 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 54 3.18558 2.08121 2.99794 0.24338 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 55 3.54243 2.65443 3.22809 0.14956 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 56 0.18699 3.60619 2.22567 3.34104 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 57 3.87655 0.12954 3.59721 2.61208 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 58 0.09048 3.74396 3.42201 3.49986 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.03577 4.04151 4.04151 1.46634 0.26236 1.09861 0.40547 59 3.19972 4.13652 0.08492 3.70254 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.01805 4.02378 * 1.46634 0.26236 0.00000 * //