# STOCKHOLM 1.0
#=GF ID mir-551
#=GF AC RF00892
#=GF DE mir-551 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 51.0
#=GF NC 50.9
#=GF TC 51.4
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000360;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 16505370
#=GF RT The colorectal microRNAome.
#=GF RA Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O,
#=GF RA Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H,
#=GF RA Kinzler KW, Vogelstein B, Velculescu VE
#=GF RL Proc Natl Acad Sci U S A. 2006;103:3687-3692.
#=GF RN [2]
#=GF RM 18463306
#=GF RT Conservation of small RNA pathways in platypus.
#=GF RA Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z,
#=GF RA Kellis M, Grutzner F, Stark A, Hannon GJ
#=GF RL Genome Res. 2008;18:995-1004.
#=GF RN [3]
#=GF RM 18511220
#=GF RT Identification of novel chicken microRNAs and analysis of their genomic
#=GF RT organization.
#=GF RA Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH
#=GF RL Gene. 2008;418:34-40.
#=GF RN [4]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF CC Imported from miRBase.
#=GF WK MicroRNA
#=GF SQ 29

URS000075D680_9606/14-87  UGGCCCAUGAAAUCAAGCGUGGGUGAGACCUGGUGCA-GAACGGGAAGGCGACCCAUACUUGGUUUCAGAGGCUG
URS0000AA5516_9600/14-87  UGGCCCAUGAAAUCAAGUGUGGGUGAGACCUGGUGCA-GAACGGGAAGGCGACCCAUACUUGGUUUCAGAGGCUG
URS00007E3C13_9615/10-83  UGGCCCAUGAAAUCAAGUGUGGGUGAGACCUGGUGCA-CAGCGGGAAGGCGACCCAUACUUGGUUUCAGAGGCUG
URS0000759962_9598/13-86  UGGCCCAUGAAAUCAAGCGUGGGUGAGACCUGGUGCA-GAACGGGAAGGCGACCCAUACUUGGUUUCAGAGGCUG
URS000075E195_9593/24-97  UGGCCCAUGAAAUCAAGCGUGGGUGAGACCUGGUGCA-GAACGGGAAGGCGACCCAUACUUGGUUUCAGAGGCUG
URS000075E705_9544/14-87  UGGCCCAUGAAAUCAAGCGUGGGUGAGACCUGGUGCA-GAACAGGAAGGCGACCCAUACUUGGUUUCAGAGGCUG
URS000075ACB2_10090/10-83 UGGCCCAUGAAAUCAAGCUUGGGUGAGACCUGGUGCA-GAACAGGAAGGCGACCCAUACUUGGUUUCAGUGGCUG
URS000075CAAE_10116/10-83 UGGCCCAUGAAAUCAAGCUUGGGUGAGACCUGGUACA-GAACAGGAAGGCGACCCAUACUUGGUUUCAGUGGCUG
URS000075A036_9796/1-62   ------AUGAAAUCAAGCGUGGGUGAGACCUGGUGCA-GAACGGGAAGGCGACCCAUACUUGGUUUCAG------
URS000075E54D_9913/14-87  UGGCCUAAGAAAUCAAGCGUGGGUGAGACCUGGUGCA-GAACAGGAAGGCGACCCAUACUUGGUUUCAGAGGCUG
URS000075D021_59729/1-67  --------GAAAUCAAGGGUGGGUAAGACCUGGUGAGCAAACUCUAAGGCGACCCAUACUUGGUUUCAGGGGCUG
URS000075C200_9258/11-84  UGGCCCCAGAAAUCAAGGAUGGGUGAGACCUCUUGCACAAG-UGGAAGGCGACCCAUACUUGGUUUCAGGGGCUU
URS000075D728_13616/1-71  ---CCCCAGAAAUCAAGGAUGGGUGAGACCUCGUGUGCAAACUGAAAGGCGACCCAUACUUGGUUUCAGGGGCU-
URS00007E3EA1_28377/4-78  UGGCUCCAGAAAUCAAGGUUGGGUGAGACCUCGUGAACAGACUGGAAGGCGACCCAUACUUGGUUUCAGGAGCUU
URS0000D538AA_8665/6-80   UGGCUCCAGAAAUCAAGGCUGGGUGAGACCUCGUGAAGAAACUAGAAGGCGACCCAUACUUGGUUUCAGGAGCUA
URS000075BD4A_9031/18-92  UGGCUCCAGAAAUCAAGGGUGGGUAAGACCUUGUAGGAUAACUGGCAGGCGACCCAUACUUGGUUUCAGGGGCUG
URS0000A856BD_7757/2-75   UGCCUCC-GAAAUCAAGUGUGGGUAUGACCUUGUUGUUUUAAUCCUAGGCGACCCAUACUUGGUUUCAAAGGACU
URS0000D521D3_7962/6-76   UUGCCCU-AGAACCAAGUGUGGGUGUGGCCUGGAUCU---UUGUUAUGGCGACCCAUCCUUGGUUUCUGAGGCUU
URS0000D55E0B_8030/1-58   --------GAAACCAAGUGUGGGUGUGGCCUGGAAUG---ACAAUAUGGCGACCCAUCCUUGGUUUCUG------
URS000075E701_9606/14-87  UGACCCUGGAAAUCCAGAGUGGGUGGGGCCAGUCUGA-CCGUUUCUAGGCGACCCACUCUUGGUUUCCAGGGUUG
URS000075E124_9593/24-97  UGACCCUGGAAAUCCAGAGUGGGUGGGGCCUGUCUGA-CCGUUUCUAGGCGACCCACUCUUGGUUUCCAGGGUUG
URS0000A96D43_9600/14-87  UGACCCUGGAAAUCCAGAGUGGGUGGGGCCUGUCUGA-CCGUUUCUAGGCGACCCACUCUUGGUUUCCAGGGUUG
URS000075C586_9598/14-87  UGACCCUGGAAAUCCAGAGUGGGUGGGGCCUGUCUGA-CCGUUUCUAGGCGACCCACUCUUGGUUUCCAGGGUUG
URS000075C62D_9544/14-87  UGACCCUGGAAAUCCAGAGUGGGUGGGGCCUGUCUGA-CCAUUUCUAGGCGACCCACUCUUGGUUUCCAGGGUUG
URS00007E35B2_9615/14-87  UGACCCUGGAAAUCCAGAGUGGGUAAGGCCUGUCUGA-UUGUGUCUAGGCGACCCACUCUUGGUUUCCAUGGUUG
URS000075C3F1_9913/14-86  UGACCCUG-AAACCCAGAGCAGGUGAGGCCUGUCUGA-CUGUUUCUGGGCGACCCAAUCUUGGUUUCCAUGGUUG
URS00007E36FD_9823/4-77   UGACCCUGGAAAUCCAGAGCGGGUGAGGCCUGUCUGA-CUGUUUCUAGGCGACCCACUCUUGGUUUCCAUGGUUG
URS000075A867_9796/1-62   ------UGGAAAUCCAGAGUGGGUGAGGCCUGUCUGA-CCAUUUCUAGGCGACCCACUCUUGGUUUCCA------
URS000075E503_13616/1-74  UGACCCUGGAAAUCCAGAAGGGGUGGAGCCUGUUGGA-CAGUUUCUAGGCGACCCAUUCUUGGUUUCAAGGGUUG
#=GC SS_cons              :<<<<<<-<<<<<<-<<---<<<<---<<<<______.________>>>>->>>>--->>->>>>>>->>>>>>:
#=GC RF                   UggCCccaGAAAuCAAGaGUGGGUGaGgCCugguugA.aaauuugaaGGcGACCCAUaCUUGgUUUCaggGGcug
//
