# STOCKHOLM 1.0
#=GF ID MIR821
#=GF AC RF00885
#=GF DE MIR821 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 249.0
#=GF NC 248.9
#=GF TC 249.0
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000350;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF DR GO; 0016442; RISC complex;
#=GF RN [1]
#=GF RM 16959252
#=GF RT Rice embryogenic calli express a unique set of microRNAs, suggesting
#=GF RT regulatory roles of microRNAs in plant post-embryogenic development.
#=GF RA Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH
#=GF RL FEBS Lett. 2006;580:5111-5116.
#=GF RN [2]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF WK MicroRNA
#=GF SQ 8

URS00006A4A2E_4530/1-274 GAUAUCAGCUGAAAAAGUCAUCAACAAAAAAGUUGAAUAACUCAUCAAGAUCUAAAACUUUUAUUUUGGUCAUUUCUUCAUACGACAAAGUGAUAGUAACAUUGUUCACAGAAUUGACAUAUCUC--UUAUCUGGUUUUAUAAACUAUAACACAUAUAUGUAAAAUUUGUGAAUAAUAUUACUAACAUUUCGUCAGAUGA
URS0000611544_4530/1-266 ----UCAACUGAAAAAGUCAUCAACAAAAAAGUUGAAUAACUCAUCAACAUCUAAAACUUUUAUUUUGGUUAUUUCUUCAUACGACAAAGUGAUAGUAACAUUAUUCACAAAAUUGACAUAACUC--UUAUCUGGUUUUAUAAACUAUAACACAUAUAUGUAAAAUUUGUGAAUAAU-UUUCUAACAUUUUGUCAGAUGA
URS0000D520C3_4558/6-280 GAUUUUAGCUAAAAAAGUCAUCAACAUAAAAGUUGUAGAACUGGUCAAGAUCUCUAAUUUUUAUUUUAGUCAUUUUUUCAUAUGACAAAGUAAUAGUAACAUUGGUCAUAAAUUUUACAUAUCUC--UGAUAUAGUUUCAUAAACUAUAUGAGAGAUAUGUAAAAUUUAUGAACAAUGUUACUAUUACUUUGCCGGAUGA
URS0000D5421C_4558/1-264 -----------AAAAAGUCAUCAAAAUAAAAGUUGUAGAACUAGUCAAGAUCUCCCAUUUUUAUUUUAGUCAUUUUUUCAUAUGACAAAGUAAUAGUAACAUUGUUCAUAAAUUUUACAUAUCUC--UGAUAUAGUUUAUGAAACUAUAUGAGAGAUAUGUAAAAUUUAUGAACAAUGUUACUAUUACUUUGUCAGAUGA
URS0000D515A0_4558/6-280 GAUUUCAGCUAAAAAAGUCAUCAACAUAAAAGUUGUAAAACUGGUCAAGAUCUCCAAUUUUUAUUUUAGUCAUUUUUUCAUAUGACAAAGUAAUAGUAACAUUGUUCAUAAAUUUUACAUAUCUC--UGAUAUAGUUUCAUAAACUAUAUGAGAGAUAUGUAAAAUUUAUGAACAAUGUUACUAUUACUUUGUCGGAUGA
URS0000D53663_4558/1-264 -----------AAAAAGUCAUCAACAACAAAGUUGUAGAAAUCAUUAAUAUCUAAAACUUUUAUUUUGGUCAUUUAUCCAUUCGAUAAAGUGAUAGCAACAUUGUUCAUAAAUUUUACAAAUCCC--UCGUAUGGUUUCAUAAACUAUAAGAGAGAUAUGUAAAUUUUGUGAACAAUAUUACUAUCACUUUCUCGGAUGA
URS0000D56096_4530/7-281 GAUUUCAAUUGAAAAAGUCAUCAACAAAAAAGUUGAAUAACUUAUCAAGAUCUAAAACUUUUAUUUUUGUUAUUUCUUCAUCCGACGAAAUGUUAGUAAUAUUAUUCACAAAUUUUACAUAUAUG--UGUUAAAGUUUAUAAAACCAGAUAAGAGAUAUGACAAUUUUAUAAAUAAUGUUACCAUCACUUUGUCGUAUGA
URS0000D541EA_4558/6-273 GAUUUCAGAUGAAAAAGUUAUGAACAUAAAAGUUGUAGAACUGAUUAAGAUCUACACCUUUUAUUUUGGUCAUUUGUUCAUCCAAUGAAAUGAUAGUAACAUUGUUCACAAAAUUUAUAUAUCUCACUCUUAUAGUUUAUAAAACCAUAUGAGAGAGAUGUAAAAUUUAUGAACAAUGUUAGUAUCACUCUAUCGGAUGA
#=GC SS_cons             :::::::::::::<<<<<<<<-<<-<<--<<<<<<<<<<<<<-<<<<<<<<<<-<<<<<<<<<<<<<-<<<<<<<-<<<<<-<<<<<<<<<<-<<<<<<-<<<<<<<<<<<<-<<-<<<<<<---..-----<<<<<<___>>>>>>-------->>>>>>->>->>>>>>>>>>>>->>>>>>->>>>>>>>>>->>>>
#=GC RF                  GAUuUcAgcUgAAaaagucaucaacacAAaaGuuGuagaaCuuaucaagaucuacaacuuuuauuuuaGucauuuuuuCauacGacaaagugAuaGuaacauuguuCacaaauuuuacauaucUc..UuaUaugGuuuaauaaaCcauAugAgAgauauguAaaauuuguGaacaauguuaCuaucacuuuguCgGauGa

URS00006A4A2E_4530/1-274 AGAAAUAA-AAAAAUAAAAGUUAUAGAUCUUGAUGAGUUAUUCAACUUUGUUGUUGAUGACUUUUUCAAUUGAAAUC
URS0000611544_4530/1-266 AGAAACAACAAAAAUAAAAGUUUUAGAUCUUGAUGAGUUAUUCAACUUUGUUGUUGAUGACUUUUUCAAUUGA----
URS0000D520C3_4558/6-280 AUAAAUGACCAGAAUAAAAGUUGUAGAUCUUGAUGAGUUGUACAACUUGUAUAUUCAUGACUUUAUCACCUAAAAUC
URS0000D5421C_4558/1-264 AUAAAUGAUCAAAAUAAAAGUUGUAGAUCUUGAUGAGUUGUACAACUUGUAUAUUCAUGGCUUUAUCAACUAAAAUC
URS0000D515A0_4558/6-280 AUAAAUAACCAAAAUAAAAGUUGUAGAUCUUGAUGAGUUGUACAACUUGUAUAUUCAUAACUUUAUCAACUAAAAUC
URS0000D53663_4558/1-264 ACAAAUACCUAAAAUAAAAGUUGUAUAUAUUGAUGAGUUCUACAACUUUUAUGUUCAUGAAUUUUUCGAAUGAAAUC
URS0000D56096_4530/7-281 AGAAAUAACCACAAUAAAAGUUUUAGAUCUUGAAGAGUUAUUCAACUUUGUUGUUGAUGACUUUUUCAGUUGAUAUC
URS0000D541EA_4558/6-273 AAAAAUGACCAAAAUAAUAGUUAUAGAUCUUGAUGACUUCUAUAACUUUGUUGUUGAUAACUUUUUCA---------
#=GC SS_cons             >->>>>>>>->>>>>>>>>>>>>->>>>>>>>>>->>>>>>>>>>>>>-->>->>->>>>>>>>:::::::::::::
#=GC RF                  auaaaugaCcaaaauaaaaguugUagaucuugauGaGuucuaCaaCuuuuguguugaugacuuuuUCAauUgAaAUC
//
