INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-234 ACC RF00859 DESC microRNA mir-234 STATES 214 NODES 56 CLEN 70 W 107 ALPH RNA RF no CONS yes MAP yes DATE Mon Nov 1 17:15:35 2021 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.7/updates/GO_terms/RF00859/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 9 EFFN 3.950684 CKSUM 3849368676 NULL 0.000 0.000 0.000 0.000 GA 58.00 TC 58.20 NC 57.90 EFP7GF -11.0901 0.71911 ECMLC 0.59681 -5.74330 3.15680 1600000 243216 0.004934 ECMGC 0.42503 -14.06723 -1.23312 1600000 93557 0.004275 ECMLI 0.55943 -4.69079 4.13672 1600000 167459 0.007166 ECMGI 0.47706 -9.01729 1.79873 1600000 69655 0.005743 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 107 153 -7.602 -7.809 -0.589 -1.618 IL 1 1 2 1 4 1 22 109 156 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 108 155 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 21 107 154 -8.071 -0.019 -6.725 0.160 -0.891 0.138 0.314 D 4 2 3 5 3 0 16 104 151 -8.558 -1.814 -0.488 IL 5 5 3 5 3 1 21 107 154 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 20 106 153 -8.232 -0.017 -6.886 -0.973 1.213 -0.894 -0.656 D 7 5 3 8 3 0 16 102 149 -8.191 -3.704 -0.121 IL 8 8 3 8 3 1 20 106 153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 19 105 152 -8.232 -0.017 -6.886 1.025 -1.642 0.229 -1.081 D 10 8 3 11 3 0 16 102 149 -8.191 -3.704 -0.121 IL 11 11 3 11 3 1 19 105 152 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 1 18 104 151 -8.232 -0.017 -6.886 0.906 -0.540 -0.426 -0.526 D 13 11 3 14 3 0 16 102 148 -8.191 -3.704 -0.121 IL 14 14 3 14 3 1 18 105 151 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 1 17 103 150 -8.232 -0.017 -6.886 0.883 -1.061 -1.206 0.314 D 16 14 3 17 3 0 15 102 148 -8.191 -0.270 -2.582 IL 17 17 3 17 3 1 17 104 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - c - - - ML 18 17 3 20 3 1 16 102 149 -8.581 -0.013 -7.235 0.036 0.737 -0.758 -0.480 D 19 17 3 20 3 0 14 100 147 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 16 103 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 15 101 148 -8.938 -0.348 -2.237 -2.802 -4.172 1.893 -3.536 D 22 20 3 23 3 0 13 99 146 -5.620 -0.734 -1.403 IL 23 23 3 23 3 1 17 102 148 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 75 - u - - MR 24 23 3 26 3 1 17 100 147 -8.606 -0.016 -6.924 0.160 -0.309 -1.171 0.706 D 25 23 3 26 3 0 11 97 144 -8.224 -3.402 -0.149 IR 26 26 3 26 3 1 16 101 147 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 74 - G - - MR 27 26 3 29 3 1 16 99 146 -8.606 -0.016 -6.924 -2.140 -3.439 1.824 -2.825 D 28 26 3 29 3 0 11 97 144 -8.224 -3.402 -0.149 IR 29 29 3 29 3 1 16 100 146 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 73 - U - - MR 30 29 3 32 3 1 15 98 145 -8.606 -0.016 -6.924 -0.957 0.224 -1.740 1.012 D 31 29 3 32 3 0 11 97 144 -8.224 -0.297 -2.454 IR 32 32 3 32 3 1 14 99 145 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 72 - U - - MR 33 32 3 35 3 1 15 97 144 -8.938 -0.012 -7.256 -2.655 -2.459 -3.428 1.834 D 34 32 3 35 3 0 8 95 142 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 13 98 144 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 71 - a - - MR 36 35 3 38 3 1 14 96 143 -8.938 -0.012 -7.256 0.559 -1.055 -0.634 0.487 D 37 35 3 38 3 0 8 94 141 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 12 97 143 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 70 - a - - MR 39 38 3 41 3 1 14 95 142 -8.938 -0.012 -7.256 0.627 0.599 -1.617 -0.699 D 40 38 3 41 3 0 7 93 140 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 11 96 142 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 69 - c - - MR 42 41 3 44 5 1 13 94 141 -7.644 -0.027 -7.460 -7.672 -8.564 0.185 0.980 -1.817 -0.720 D 43 41 3 44 5 0 6 92 139 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 10 94 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 8 68 G C - - MP 45 44 3 49 6 2 14 93 140 -9.393 -9.332 -0.017 -8.109 -8.389 -8.784 -5.918 -3.674 -6.239 -0.639 -6.854 -5.128 -1.929 -6.488 -5.017 3.827 -5.288 -1.442 -2.292 -5.214 -4.048 -5.100 ML 46 44 3 49 6 1 8 91 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 7 91 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 3 88 134 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 9 93 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 10 92 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 9 67 U A - - MP 51 50 6 55 6 2 13 91 138 -9.393 -9.332 -0.017 -8.109 -8.389 -8.784 -4.665 -4.649 -4.368 -0.818 -3.045 -4.791 1.902 -3.842 -4.391 -0.653 -4.692 -2.620 3.278 -4.722 -0.711 -3.217 ML 52 50 6 55 6 1 7 89 136 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 7 89 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 3 86 132 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 9 91 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 9 90 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 10 66 A U - - MP 57 56 6 61 6 2 13 89 136 -9.393 -9.332 -0.017 -8.109 -8.389 -8.784 -4.980 -3.774 -4.829 3.766 -5.874 -7.105 -1.496 -4.791 -4.772 -0.221 -5.373 -1.107 -1.896 -6.033 -3.427 -3.662 ML 58 56 6 61 6 1 7 87 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 6 87 134 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 2 84 131 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 8 89 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 9 88 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 65 U A - - MP 63 62 6 67 6 2 11 87 134 -9.393 -9.332 -0.017 -8.109 -8.389 -8.784 -5.850 -5.694 -5.490 -1.916 -4.145 -5.898 0.185 -4.933 -5.485 -1.834 -5.779 -3.556 3.772 -5.909 -1.782 -4.051 ML 64 62 6 67 6 1 6 85 132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 5 85 132 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 2 82 129 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 8 87 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 8 86 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 64 U A - - MP 69 68 6 73 6 2 10 85 132 -9.393 -9.332 -0.017 -8.109 -8.389 -8.784 -5.850 -5.694 -5.490 -1.916 -4.145 -5.898 0.185 -4.933 -5.485 -1.834 -5.779 -3.556 3.772 -5.909 -1.782 -4.051 ML 70 68 6 73 6 1 6 84 131 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 4 83 130 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 2 81 128 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 7 85 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 7 84 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 63 C G - - MP 75 74 6 79 4 2 8 83 130 -7.602 -7.809 -0.034 -6.224 -5.923 -5.944 -5.362 -2.113 -3.848 -5.591 3.822 -4.801 -5.495 -2.006 -5.569 -3.954 -0.518 -5.896 -1.627 -4.302 ML 76 74 6 79 4 1 5 82 129 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 3 82 128 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 1 80 127 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 6 83 130 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 6 83 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 14 - u - - - ML 81 80 6 83 3 1 7 81 128 -8.581 -0.013 -7.235 -0.227 -0.266 -0.813 0.803 D 82 80 6 83 3 0 1 79 126 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 5 82 129 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 15 - u - - - ML 84 83 3 86 3 1 6 80 127 -8.581 -0.013 -7.235 0.287 0.085 -1.301 0.393 D 85 83 3 86 3 0 0 78 125 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 5 81 128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 16 - g - - - ML 87 86 3 89 3 1 5 79 126 -8.938 -0.012 -7.256 -0.520 0.024 0.215 0.170 D 88 86 3 89 3 0 0 78 124 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 3 80 126 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 62 - A - - MR 90 89 3 92 3 1 5 78 125 -8.938 -0.012 -7.256 1.887 -3.599 -3.119 -3.265 D 91 89 3 92 3 0 0 76 123 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 3 79 125 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 61 - G - - MR 93 92 3 95 3 1 4 77 124 -8.938 -0.012 -7.256 -0.055 -2.364 1.357 -1.823 D 94 92 3 95 3 0 0 75 122 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 2 78 124 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 60 - C - - MR 96 95 3 98 5 1 4 76 123 -7.644 -0.027 -7.460 -7.672 -8.564 -1.417 1.115 -2.299 0.330 D 97 95 3 98 5 0 0 75 121 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 76 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 59 a u - - MP 99 98 3 103 6 2 5 75 122 -9.393 -9.332 -0.017 -8.109 -8.389 -8.784 -3.565 -2.688 -3.720 2.516 -4.263 -4.872 -0.271 -3.935 -3.586 1.074 -4.110 2.167 -0.483 -4.073 -2.053 0.302 ML 100 98 3 103 6 1 1 74 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 73 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 71 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 75 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 74 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 18 58 G C - - MP 105 104 6 109 6 2 4 73 120 -9.393 -9.332 -0.017 -8.109 -8.389 -8.784 -5.918 -3.674 -6.239 -0.639 -6.854 -5.128 -1.929 -6.488 -5.017 3.827 -5.288 -1.442 -2.292 -5.214 -4.048 -5.100 ML 106 104 6 109 6 1 1 72 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 72 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 70 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 73 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 72 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 19 57 U G - - MP 111 110 6 115 4 2 2 71 118 -7.602 -7.809 -0.417 -2.051 -5.162 -5.293 -4.638 -1.529 -3.115 -4.883 1.840 -3.987 -4.713 -1.437 -4.900 -3.470 0.240 -5.097 3.313 -3.532 ML 112 110 6 115 4 1 1 71 118 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 70 117 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 69 116 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 72 118 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 71 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 20 - u - - - ML 117 116 6 119 5 1 1 70 116 -7.325 -0.033 -7.141 -7.353 -8.245 -0.511 -1.089 0.403 0.590 D 118 116 6 119 5 0 0 68 115 -6.410 -0.245 -5.671 -4.046 -3.959 IL 119 119 3 119 5 1 1 70 116 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 21 56 A U - - MP 120 119 3 124 6 2 2 69 115 -9.393 -9.332 -0.017 -8.109 -8.389 -8.784 -4.367 -3.166 -4.456 3.524 -5.731 -6.570 -1.352 -4.548 -4.214 0.485 -4.831 0.803 -1.512 -5.347 -3.239 -3.189 ML 121 119 3 124 6 1 1 67 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 66 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 63 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 68 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 68 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 22 55 A U - - MP 126 125 6 130 6 2 2 67 113 -9.393 -9.332 -0.017 -8.109 -8.389 -8.784 -4.980 -3.774 -4.829 3.766 -5.874 -7.105 -1.496 -4.791 -4.772 -0.221 -5.373 -1.107 -1.896 -6.033 -3.427 -3.662 ML 127 125 6 130 6 1 1 65 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 64 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 61 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 66 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 66 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 23 54 U A - - MP 132 131 6 136 6 2 2 65 111 -9.393 -9.332 -0.017 -8.109 -8.389 -8.784 -5.850 -5.694 -5.490 -1.916 -4.145 -5.898 0.185 -4.933 -5.485 -1.834 -5.779 -3.556 3.772 -5.909 -1.782 -4.051 ML 133 131 6 136 6 1 1 63 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 62 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 59 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 64 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 64 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 24 53 A U - - MP 138 137 6 142 6 2 2 63 109 -9.393 -9.332 -0.017 -8.109 -8.389 -8.784 -4.180 -2.986 -4.321 3.124 -5.532 -6.280 -1.166 -4.445 -4.041 0.708 -4.650 2.042 -1.320 -5.102 -3.044 -3.034 ML 139 137 6 142 6 1 1 61 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 60 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 57 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 62 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 62 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 25 52 A U - - MP 144 143 6 148 6 2 2 61 107 -9.393 -9.332 -0.017 -8.109 -8.389 -8.784 -4.980 -3.774 -4.829 3.766 -5.874 -7.105 -1.496 -4.791 -4.772 -0.221 -5.373 -1.107 -1.896 -6.033 -3.427 -3.662 ML 145 143 6 148 6 1 1 58 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 58 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 55 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 60 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 60 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 26 51 c g - - MP 150 149 6 154 6 2 2 59 105 -9.393 -9.332 -0.017 -8.109 -8.389 -8.784 -4.429 -4.384 -4.220 -0.515 -2.980 -4.725 2.724 -3.743 -4.220 -0.337 -4.571 -2.302 2.679 -4.528 -0.627 -3.047 ML 151 149 6 154 6 1 1 56 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 56 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 52 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 58 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 58 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 27 50 A U - - MP 156 155 6 160 4 2 2 57 103 -7.602 -1.607 -0.615 -6.224 -4.980 -3.774 -4.829 3.766 -5.874 -7.105 -1.496 -4.791 -4.772 -0.221 -5.373 -1.107 -1.896 -6.033 -3.427 -3.662 ML 157 155 6 160 4 1 1 53 99 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 52 99 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 51 98 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 56 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 57 104 -0.568 -1.946 -3.919 0.000 0.000 0.000 0.000 [ MATL 38 ] 28 - a - - - ML 162 161 6 164 3 1 1 30 49 -8.456 -0.409 -2.034 0.595 -0.475 -0.670 0.191 D 163 161 6 164 3 0 0 29 48 -7.295 -2.808 -0.233 IL 164 164 3 164 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 29 - a - - - ML 165 164 3 167 3 1 1 29 48 -8.066 -0.019 -6.720 0.852 -1.474 0.376 -0.896 D 166 164 3 167 3 0 0 28 47 -8.568 -0.632 -1.506 IL 167 167 3 167 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 30 - a - - - ML 168 167 3 170 3 1 1 28 47 -8.456 -0.015 -7.110 0.594 -1.009 -0.592 0.412 D 169 167 3 170 3 0 0 27 46 -7.295 -2.808 -0.233 IL 170 170 3 170 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 31 - a - - - ML 171 170 3 173 3 1 1 27 46 -8.456 -0.120 -3.696 0.651 -1.209 0.176 -0.205 D 172 170 3 173 3 0 0 26 45 -7.295 -2.808 -0.233 IL 173 173 3 173 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 32 - U - - - ML 174 173 3 176 3 1 1 26 45 -8.351 -0.016 -7.005 -0.495 -1.265 -1.770 1.368 D 175 173 3 176 3 0 0 24 43 -7.799 -3.312 -0.160 IL 176 176 3 176 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 33 - G - - - ML 177 176 3 179 3 1 1 25 44 -8.351 -0.150 -3.383 -0.500 -2.387 1.496 -1.828 D 178 176 3 179 3 0 0 24 42 -7.799 -3.312 -0.160 IL 179 179 3 179 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 34 - a - - - ML 180 179 3 182 3 1 1 24 43 -8.218 -0.017 -6.872 0.994 -0.679 -0.472 -0.593 D 181 179 3 182 3 0 0 23 42 -8.227 -0.262 -2.618 IL 182 182 3 182 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 35 - u - - - ML 183 182 3 185 3 1 1 23 42 -8.581 -0.013 -7.235 -0.295 0.391 -0.917 0.426 D 184 182 3 185 3 0 0 22 41 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 36 - u - - - ML 186 185 3 188 3 1 1 22 40 -8.581 -0.013 -7.235 0.377 -1.046 -0.250 0.460 D 187 185 3 188 3 0 0 21 40 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 37 - u - - - ML 189 188 3 191 3 1 1 21 39 -8.581 -0.013 -7.235 -0.726 0.404 -0.910 0.623 D 190 188 3 191 3 0 0 20 39 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 38 - c - - - ML 192 191 3 194 3 1 1 19 38 -8.581 -0.013 -7.235 0.084 0.232 -0.287 -0.081 D 193 191 3 194 3 0 0 19 38 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 39 - A - - - ML 195 194 3 197 3 1 1 18 37 -8.581 -0.013 -7.235 1.627 -2.445 -1.045 -2.044 D 196 194 3 197 3 0 0 18 36 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 40 - a - - - ML 198 197 3 200 3 1 1 17 36 -8.581 -0.013 -7.235 0.145 -0.300 -0.010 0.123 D 199 197 3 200 3 0 0 17 35 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 41 - u - - - ML 201 200 3 203 3 1 1 16 34 -8.581 -0.013 -7.235 -0.170 -0.576 0.035 0.501 D 202 200 3 203 3 0 0 16 34 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 42 - a - - - ML 204 203 3 206 3 1 1 14 33 -8.581 -0.110 -3.822 0.681 -0.493 0.055 -0.629 D 205 203 3 206 3 0 0 14 33 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 43 - C - - - ML 207 206 3 209 3 1 1 13 31 -8.485 -0.129 -3.599 0.026 1.052 -1.811 -0.682 D 208 206 3 209 3 0 0 13 31 -7.106 -2.619 -0.269 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 44 - u - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 -0.431 -0.440 0.111 0.527 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-234 ACC RF00859 DESC microRNA mir-234 LENG 70 MAXL 150 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Nov 1 17:15:35 2021 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 9 EFFN 5.207520 CKSUM 3849368676 STATS LOCAL MSV -7.9278 0.71911 STATS LOCAL VITERBI -8.9773 0.71911 STATS LOCAL FORWARD -3.1185 0.71911 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.21540 1.70188 1.53501 1.18544 1.38629 1.38629 1.38629 1.38629 0.41963 4.38267 1.10801 1.46634 0.26236 0.00000 * 1 1.28557 2.06960 1.25651 1.16275 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.03731 4.00035 4.00035 1.46634 0.26236 1.25856 0.33416 2 2.29390 0.44398 2.07076 2.02832 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03295 4.12220 4.12220 1.46634 0.26236 3.06139 0.04795 3 0.62742 2.71607 1.19169 2.34139 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03295 4.12220 4.12220 1.46634 0.26236 3.06139 0.04795 4 0.71579 1.76741 1.69627 1.85118 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.03295 4.12220 4.12220 1.46634 0.26236 3.06139 0.04795 5 0.73025 2.22617 2.32944 1.16180 5 a - - : 1.38629 1.38629 1.38629 1.38629 0.03295 4.12220 4.12220 1.46634 0.26236 0.09832 2.36824 6 1.38309 0.81021 1.94106 1.82709 6 c - - : 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 7 3.65186 4.63197 0.05254 4.16644 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 8 3.25699 4.19607 0.07186 4.14927 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 9 3.40552 1.47788 3.21476 0.35878 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 10 0.10423 4.05076 2.78816 3.91024 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 11 4.26661 2.97588 4.15050 0.08424 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 12 4.26340 2.97548 4.14861 0.08434 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 13 4.26499 0.08224 4.16020 3.00994 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 14 1.57686 1.57340 1.96973 0.80622 14 u - - - 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 15 1.18018 1.29916 2.38835 1.11402 15 u - - - 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 16 1.85111 1.33569 1.19135 1.28681 16 g - - - 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 17 0.89203 3.30076 0.85618 2.05151 17 g - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 18 3.26034 4.20139 0.07151 4.15650 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 19 3.81048 1.53303 3.69135 0.30511 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.29685 4.38267 1.40915 1.46634 0.26236 1.09861 0.40547 20 1.84884 2.25511 1.05107 0.94636 20 u - - - 1.38629 1.38629 1.38629 1.38629 0.03307 4.11889 4.11889 1.46634 0.26236 0.09735 2.37773 21 0.26053 3.89735 1.70601 3.59451 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 22 0.10528 4.03446 2.78396 3.89019 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 23 4.23741 2.97218 4.13326 0.08520 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 24 0.52210 3.80827 1.03731 3.50206 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 25 0.10508 4.03759 2.78477 3.89403 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 26 3.15113 0.83279 2.93745 0.75638 26 u - - < 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 27 0.10502 4.03846 2.78499 3.89511 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.12035 4.38267 2.29364 1.46634 0.26236 1.09861 0.40547 28 0.95239 1.73035 1.87508 1.26013 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.33094 4.29011 1.31659 1.46634 0.26236 2.31027 0.10451 29 0.75441 2.56528 1.08197 2.17256 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03745 3.99662 3.99662 1.46634 0.26236 0.38120 1.14897 30 0.95021 2.17318 1.81713 1.08757 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02779 4.29011 4.29011 1.46634 0.26236 2.31027 0.10451 31 0.91271 2.32617 1.23337 1.56263 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.10810 4.29011 2.42183 1.46634 0.26236 2.31027 0.10451 32 1.80476 2.43703 2.80975 0.37419 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03008 4.21209 4.21209 1.46634 0.26236 2.74433 0.06645 33 1.80629 3.27192 0.29720 2.90205 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.13322 4.21209 2.20804 1.46634 0.26236 2.74433 0.06645 34 0.65059 1.87754 1.73356 1.90621 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03329 4.11216 4.11216 1.46634 0.26236 0.09543 2.39668 35 1.64125 1.06950 2.05822 1.09243 35 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 36 1.11493 2.20191 1.55189 1.05090 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 37 2.01617 1.05575 2.05108 0.94081 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 38 1.34562 1.18267 1.57598 1.48564 38 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 39 0.21991 3.33504 2.14835 3.09846 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 40 1.29641 1.58861 1.37027 1.31587 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 41 1.54345 1.81182 1.32986 1.02586 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 42 0.88736 1.72612 1.32097 1.94205 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.09798 4.38267 2.51522 1.46634 0.26236 1.09861 0.40547 43 1.39106 0.57721 2.86201 2.02063 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.11394 4.31187 2.36147 1.46634 0.26236 2.13674 0.12561 44 1.76763 1.70336 1.26772 1.00589 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.53437 0.91786 4.22754 1.37011 0.29314 0.14838 1.98123 45 4.08664 3.17828 3.83926 0.08334 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 46 0.82154 3.10260 0.77474 2.90975 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 47 4.07557 3.17608 3.83366 0.08377 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 48 3.66203 2.49031 3.56955 0.14703 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 49 0.09883 4.29430 2.79532 3.94464 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 50 4.00499 3.16162 3.79725 0.08666 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 51 3.66586 2.59862 3.61013 0.13583 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 52 2.67201 3.83820 0.12669 3.56308 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 53 4.31122 0.08677 4.07599 2.94270 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 54 3.29036 2.26151 3.09419 0.20671 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 55 2.59185 0.55491 3.23054 1.16649 60 C - - - 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 56 1.44668 3.25859 0.39846 2.90314 61 G - - - 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 57 0.05432 4.23602 3.88011 4.03101 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 58 3.28829 4.31907 0.07036 4.05659 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 59 0.09625 4.34790 2.80573 3.99718 64 A - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 60 0.09606 4.35209 2.80652 4.00129 65 A - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 61 4.12787 3.18629 3.85984 0.08177 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 62 0.39796 3.38171 1.37787 3.16516 67 A - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 63 4.32684 0.08624 4.08403 2.94544 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 64 1.26300 0.63141 2.86659 2.05213 69 C - - : 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 65 0.91904 0.90855 2.69888 2.03476 70 c - - : 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 66 0.97634 2.21317 1.84798 1.03169 71 a - - : 1.38629 1.38629 1.38629 1.38629 0.02530 4.38267 4.38267 1.46634 0.26236 1.09861 0.40547 67 3.57434 3.38943 4.11651 0.08128 72 U - - : 1.38629 1.38629 1.38629 1.38629 0.29343 4.38267 1.41961 1.46634 0.26236 1.09861 0.40547 68 2.21819 1.19607 2.77390 0.64170 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.03295 4.12220 4.12220 1.46634 0.26236 3.06139 0.04795 69 3.20345 4.14062 0.08458 3.70648 74 G - - : 1.38629 1.38629 1.38629 1.38629 0.03295 4.12220 4.12220 1.46634 0.26236 3.06139 0.04795 70 1.27412 1.60686 2.27536 0.87456 75 u - - : 1.38629 1.38629 1.38629 1.38629 0.01661 4.10585 * 1.46634 0.26236 0.00000 * //