INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-234 ACC RF00859 DESC microRNA mir-234 STATES 214 NODES 56 CLEN 70 W 106 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 00:17:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00859/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 9 EFFN 3.959473 CKSUM 3849368676 NULL 0.000 0.000 0.000 0.000 GA 58.00 TC 58.00 NC 56.90 EFP7GF -11.1128 0.71913 ECMLC 0.59352 -5.78446 3.15788 1600000 242205 0.004954 ECMGC 0.42592 -14.00523 -1.20518 1600000 93268 0.004289 ECMLI 0.55826 -4.71087 4.14098 1600000 168002 0.007143 ECMGI 0.47540 -9.01683 1.83073 1600000 69451 0.005759 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 106 151 -7.605 -7.812 -0.572 -1.654 IL 1 1 2 1 4 1 22 108 153 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 107 153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 21 106 151 -8.088 -0.019 -6.743 0.169 -0.905 0.166 0.287 D 4 2 3 5 3 0 17 103 148 -8.530 -1.784 -0.500 IL 5 5 3 5 3 1 21 106 152 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 20 105 150 -8.248 -0.017 -6.902 -0.978 1.210 -0.871 -0.662 D 7 5 3 8 3 0 16 101 147 -8.153 -3.666 -0.124 IL 8 8 3 8 3 1 20 105 151 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 19 104 149 -8.248 -0.017 -6.902 1.026 -1.658 0.238 -1.098 D 10 8 3 11 3 0 16 101 146 -8.153 -3.666 -0.124 IL 11 11 3 11 3 1 19 104 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 1 18 103 148 -8.248 -0.017 -6.902 0.906 -0.524 -0.438 -0.530 D 13 11 3 14 3 0 16 101 146 -8.153 -3.666 -0.124 IL 14 14 3 14 3 1 18 103 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 1 17 102 147 -8.248 -0.017 -6.902 0.865 -1.060 -1.211 0.341 D 16 14 3 17 3 0 16 100 146 -8.153 -0.277 -2.545 IL 17 17 3 17 3 1 17 102 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - c - - - ML 18 17 3 20 3 1 16 101 146 -8.583 -0.013 -7.237 0.076 0.693 -0.715 -0.473 D 19 17 3 20 3 0 14 99 144 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 16 101 147 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 15 100 145 -8.940 -0.334 -2.288 -2.806 -4.176 1.894 -3.540 D 22 20 3 23 3 0 13 98 144 -5.620 -0.734 -1.403 IL 23 23 3 23 3 1 17 100 146 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 75 - u - - MR 24 23 3 26 3 1 17 99 145 -8.621 -0.016 -6.939 0.133 -0.318 -1.189 0.734 D 25 23 3 26 3 0 11 96 142 -8.189 -3.366 -0.153 IR 26 26 3 26 3 1 16 99 145 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 74 - G - - MR 27 26 3 29 3 1 16 98 144 -8.621 -0.016 -6.939 -2.172 -3.475 1.828 -2.861 D 28 26 3 29 3 0 11 96 142 -8.189 -3.366 -0.153 IR 29 29 3 29 3 1 16 98 144 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 73 - U - - MR 30 29 3 32 3 1 15 97 143 -8.621 -0.016 -6.939 -0.971 0.233 -1.756 1.013 D 31 29 3 32 3 0 11 96 141 -8.189 -0.305 -2.418 IR 32 32 3 32 3 1 14 97 143 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 72 - U - - MR 33 32 3 35 3 1 15 96 142 -8.940 -0.012 -7.258 -2.659 -2.462 -3.432 1.835 D 34 32 3 35 3 0 8 94 140 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 13 96 142 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 71 - a - - MR 36 35 3 38 3 1 14 95 141 -8.940 -0.012 -7.258 0.600 -1.064 -0.632 0.445 D 37 35 3 38 3 0 8 93 139 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 12 95 141 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 70 - a - - MR 39 38 3 41 3 1 14 94 140 -8.940 -0.012 -7.258 0.682 0.541 -1.604 -0.710 D 40 38 3 41 3 0 7 92 138 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 11 94 140 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 69 - c - - MR 42 41 3 44 5 1 13 93 139 -7.646 -0.026 -7.462 -7.674 -8.566 0.239 0.941 -1.789 -0.712 D 43 41 3 44 5 0 6 91 137 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 10 93 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 8 68 G C - - MP 45 44 3 49 6 2 14 92 138 -9.394 -9.334 -0.017 -8.110 -8.390 -8.785 -5.922 -3.676 -6.244 -0.642 -6.859 -5.129 -1.933 -6.493 -5.019 3.828 -5.290 -1.444 -2.296 -5.217 -4.053 -5.105 ML 46 44 3 49 6 1 8 90 136 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 8 90 135 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 3 86 132 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 9 91 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 10 91 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 9 67 U A - - MP 51 50 6 55 6 2 14 90 136 -9.394 -9.334 -0.017 -8.110 -8.390 -8.785 -4.658 -4.642 -4.364 -0.810 -3.044 -4.789 1.924 -3.839 -4.386 -0.645 -4.689 -2.612 3.268 -4.717 -0.709 -3.213 ML 52 50 6 55 6 1 7 88 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 7 88 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 3 85 130 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 9 89 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 9 89 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 10 66 A U - - MP 57 56 6 61 6 2 13 88 134 -9.394 -9.334 -0.017 -8.110 -8.390 -8.785 -4.984 -3.778 -4.832 3.767 -5.880 -7.112 -1.502 -4.794 -4.776 -0.225 -5.377 -1.110 -1.902 -6.039 -3.433 -3.666 ML 58 56 6 61 6 1 7 86 132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 6 86 132 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 2 83 128 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 8 87 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 9 87 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 65 U A - - MP 63 62 6 67 6 2 12 86 132 -9.394 -9.334 -0.017 -8.110 -8.390 -8.785 -5.856 -5.700 -5.496 -1.922 -4.149 -5.903 0.181 -4.938 -5.491 -1.841 -5.784 -3.562 3.773 -5.915 -1.786 -4.055 ML 64 62 6 67 6 1 6 84 130 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 5 84 130 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 2 81 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 8 85 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 8 85 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 64 U A - - MP 69 68 6 73 6 2 10 84 130 -9.394 -9.334 -0.017 -8.110 -8.390 -8.785 -5.856 -5.700 -5.496 -1.922 -4.149 -5.903 0.181 -4.938 -5.491 -1.841 -5.784 -3.562 3.773 -5.915 -1.786 -4.055 ML 70 68 6 73 6 1 6 83 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 4 82 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 2 80 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 7 83 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 7 83 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 63 C G - - MP 75 74 6 79 4 2 8 82 128 -7.605 -7.812 -0.033 -6.226 -5.928 -5.950 -5.366 -2.118 -3.851 -5.594 3.822 -4.805 -5.499 -2.012 -5.572 -3.959 -0.522 -5.900 -1.630 -4.307 ML 76 74 6 79 4 1 5 81 127 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 3 81 126 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 1 79 125 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 6 82 128 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 6 82 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 14 - u - - - ML 81 80 6 83 3 1 7 80 126 -8.583 -0.013 -7.237 -0.238 -0.278 -0.845 0.824 D 82 80 6 83 3 0 1 78 124 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 5 81 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 15 - u - - - ML 84 83 3 86 3 1 6 79 125 -8.583 -0.013 -7.237 0.252 0.125 -1.314 0.397 D 85 83 3 86 3 0 0 77 123 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 5 80 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 16 - g - - - ML 87 86 3 89 3 1 5 78 124 -8.940 -0.012 -7.258 -0.522 0.034 0.216 0.162 D 88 86 3 89 3 0 0 77 122 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 3 79 124 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 62 - A - - MR 90 89 3 92 3 1 5 77 123 -8.940 -0.012 -7.258 1.887 -3.603 -3.122 -3.269 D 91 89 3 92 3 0 0 75 121 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 3 78 123 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 61 - G - - MR 93 92 3 95 3 1 4 76 122 -8.940 -0.012 -7.258 -0.074 -2.377 1.366 -1.836 D 94 92 3 95 3 0 0 74 120 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 2 77 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 60 - C - - MR 96 95 3 98 5 1 4 75 121 -7.646 -0.026 -7.462 -7.674 -8.566 -1.398 1.083 -2.278 0.374 D 97 95 3 98 5 0 0 73 119 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 75 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 59 a u - - MP 99 98 3 103 6 2 5 74 120 -9.394 -9.334 -0.017 -8.110 -8.390 -8.785 -3.566 -2.694 -3.718 2.531 -4.260 -4.875 -0.271 -3.935 -3.588 1.074 -4.114 2.147 -0.482 -4.073 -2.052 0.301 ML 100 98 3 103 6 1 1 72 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 72 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 69 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 73 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 73 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 18 58 G C - - MP 105 104 6 109 6 2 4 72 118 -9.394 -9.334 -0.017 -8.110 -8.390 -8.785 -5.922 -3.676 -6.244 -0.642 -6.859 -5.129 -1.933 -6.493 -5.019 3.828 -5.290 -1.444 -2.296 -5.217 -4.053 -5.105 ML 106 104 6 109 6 1 1 71 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 71 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 68 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 72 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 71 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 19 57 U G - - MP 111 110 6 115 4 2 2 70 116 -7.605 -7.812 -0.436 -1.992 -5.166 -5.297 -4.641 -1.533 -3.117 -4.886 1.838 -3.990 -4.716 -1.442 -4.903 -3.475 0.237 -5.101 3.315 -3.535 ML 112 110 6 115 4 1 1 70 115 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 69 115 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 68 114 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 71 116 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 70 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 20 - u - - - ML 117 116 6 119 5 1 1 68 114 -7.311 -0.034 -7.127 -7.339 -8.231 -0.504 -1.092 0.447 0.549 D 118 116 6 119 5 0 0 67 113 -6.451 -0.238 -5.713 -4.088 -4.000 IL 119 119 3 119 5 1 1 68 114 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 21 56 A U - - MP 120 119 3 124 6 2 2 67 113 -9.394 -9.334 -0.017 -8.110 -8.390 -8.785 -4.398 -3.194 -4.478 3.545 -5.768 -6.615 -1.386 -4.566 -4.243 0.450 -4.861 0.714 -1.547 -5.386 -3.275 -3.215 ML 121 119 3 124 6 1 1 65 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 65 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 62 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 67 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 67 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 22 55 A U - - MP 126 125 6 130 6 2 2 65 111 -9.394 -9.334 -0.017 -8.110 -8.390 -8.785 -4.984 -3.778 -4.832 3.767 -5.880 -7.112 -1.502 -4.794 -4.776 -0.225 -5.377 -1.110 -1.902 -6.039 -3.433 -3.666 ML 127 125 6 130 6 1 1 63 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 63 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 60 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 65 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 65 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 23 54 U A - - MP 132 131 6 136 6 2 2 63 109 -9.394 -9.334 -0.017 -8.110 -8.390 -8.785 -5.856 -5.700 -5.496 -1.922 -4.149 -5.903 0.181 -4.938 -5.491 -1.841 -5.784 -3.562 3.773 -5.915 -1.786 -4.055 ML 133 131 6 136 6 1 1 61 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 61 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 58 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 63 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 63 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 24 53 A U - - MP 138 137 6 142 6 2 2 61 107 -9.394 -9.334 -0.017 -8.110 -8.390 -8.785 -4.184 -2.987 -4.325 3.100 -5.542 -6.288 -1.174 -4.448 -4.044 0.705 -4.653 2.094 -1.327 -5.109 -3.053 -3.038 ML 139 137 6 142 6 1 1 59 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 59 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 56 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 61 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 61 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 25 52 A U - - MP 144 143 6 148 6 2 2 59 105 -9.394 -9.334 -0.017 -8.110 -8.390 -8.785 -4.984 -3.778 -4.832 3.767 -5.880 -7.112 -1.502 -4.794 -4.776 -0.225 -5.377 -1.110 -1.902 -6.039 -3.433 -3.666 ML 145 143 6 148 6 1 1 57 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 57 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 54 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 59 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 59 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 26 51 c g - - MP 150 149 6 154 6 2 2 57 103 -9.394 -9.334 -0.017 -8.110 -8.390 -8.785 -4.433 -4.386 -4.223 -0.516 -2.982 -4.728 2.761 -3.745 -4.222 -0.337 -4.574 -2.303 2.640 -4.531 -0.628 -3.048 ML 151 149 6 154 6 1 1 55 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 55 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 52 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 57 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 57 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 27 50 A U - - MP 156 155 6 160 4 2 2 55 101 -7.605 -1.682 -0.578 -6.226 -4.984 -3.778 -4.832 3.767 -5.880 -7.112 -1.502 -4.794 -4.776 -0.225 -5.377 -1.110 -1.902 -6.039 -3.433 -3.666 ML 157 155 6 160 4 1 1 52 97 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 51 97 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 50 95 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 55 100 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 56 102 -0.583 -1.928 -3.840 0.000 0.000 0.000 0.000 [ MATL 38 ] 28 - a - - - ML 162 161 6 164 3 1 1 30 49 -8.458 -0.429 -1.974 0.554 -0.450 -0.652 0.218 D 163 161 6 164 3 0 0 29 48 -7.295 -2.809 -0.233 IL 164 164 3 164 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 29 - a - - - ML 165 164 3 167 3 1 1 29 48 -8.048 -0.019 -6.702 0.839 -1.458 0.382 -0.878 D 166 164 3 167 3 0 0 28 47 -8.606 -0.612 -1.544 IL 167 167 3 167 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 30 - a - - - ML 168 167 3 170 3 1 1 28 47 -8.458 -0.015 -7.112 0.580 -1.006 -0.635 0.447 D 169 167 3 170 3 0 0 27 46 -7.295 -2.809 -0.233 IL 170 170 3 170 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 31 - a - - - ML 171 170 3 173 3 1 1 27 46 -8.458 -0.125 -3.640 0.605 -1.202 0.219 -0.184 D 172 170 3 173 3 0 0 26 45 -7.295 -2.809 -0.233 IL 173 173 3 173 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 32 - U - - - ML 174 173 3 176 3 1 1 26 45 -8.349 -0.016 -7.003 -0.457 -1.250 -1.746 1.352 D 175 173 3 176 3 0 0 24 43 -7.818 -3.332 -0.158 IL 176 176 3 176 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 33 - G - - - ML 177 176 3 179 3 1 1 25 44 -8.349 -0.140 -3.479 -0.450 -2.352 1.477 -1.793 D 178 176 3 179 3 0 0 24 42 -7.818 -3.332 -0.158 IL 179 179 3 179 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 34 - A - - - ML 180 179 3 182 3 1 1 24 43 -8.226 -0.017 -6.880 1.012 -0.664 -0.529 -0.602 D 181 179 3 182 3 0 0 23 42 -8.215 -0.265 -2.606 IL 182 182 3 182 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 35 - u - - - ML 183 182 3 185 3 1 1 23 42 -8.583 -0.013 -7.237 -0.270 0.334 -0.885 0.453 D 184 182 3 185 3 0 0 22 41 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 36 - u - - - ML 186 185 3 188 3 1 1 22 40 -8.583 -0.013 -7.237 0.356 -1.043 -0.279 0.497 D 187 185 3 188 3 0 0 21 40 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 37 - u - - - ML 189 188 3 191 3 1 1 21 39 -8.583 -0.013 -7.237 -0.721 0.436 -0.884 0.584 D 190 188 3 191 3 0 0 20 39 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 38 - c - - - ML 192 191 3 194 3 1 1 19 38 -8.583 -0.013 -7.237 0.109 0.196 -0.248 -0.099 D 193 191 3 194 3 0 0 19 38 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 39 - A - - - ML 195 194 3 197 3 1 1 18 37 -8.583 -0.013 -7.237 1.640 -2.473 -1.103 -2.078 D 196 194 3 197 3 0 0 18 36 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 40 - a - - - ML 198 197 3 200 3 1 1 17 36 -8.583 -0.013 -7.237 0.166 -0.343 -0.004 0.128 D 199 197 3 200 3 0 0 17 35 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 41 - u - - - ML 201 200 3 203 3 1 1 16 34 -8.583 -0.013 -7.237 -0.157 -0.555 0.008 0.503 D 202 200 3 203 3 0 0 16 34 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 42 - a - - - ML 204 203 3 206 3 1 1 14 33 -8.583 -0.114 -3.766 0.661 -0.509 0.100 -0.634 D 205 203 3 206 3 0 0 14 33 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 43 - C - - - ML 207 206 3 209 3 1 1 13 31 -8.483 -0.134 -3.537 0.083 1.013 -1.775 -0.666 D 208 206 3 209 3 0 0 13 31 -7.137 -2.650 -0.263 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 44 - u - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 -0.424 -0.413 0.107 0.513 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-234 ACC RF00859 DESC microRNA mir-234 LENG 70 MAXL 150 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 00:17:20 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00859/CM NSEQ 9 EFFN 5.216309 CKSUM 3849368676 STATS LOCAL MSV -7.8860 0.71913 STATS LOCAL VITERBI -8.9738 0.71913 STATS LOCAL FORWARD -3.1117 0.71913 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.21392 1.70695 1.53290 1.18534 1.38629 1.38629 1.38629 1.38629 0.40717 4.38377 1.13323 1.46634 0.26236 0.00000 * 1 1.27926 2.08110 1.23537 1.18340 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.03681 4.01341 4.01341 1.46634 0.26236 1.23585 0.34332 2 2.29781 0.44619 2.05122 2.03346 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03257 4.13380 4.13380 1.46634 0.26236 3.03133 0.04945 3 0.62702 2.73004 1.18476 2.35620 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03257 4.13380 4.13380 1.46634 0.26236 3.03133 0.04945 4 0.71561 1.75489 1.70549 1.85470 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.03257 4.13380 4.13380 1.46634 0.26236 3.03133 0.04945 5 0.74314 2.22667 2.33291 1.14106 5 a - - : 1.38629 1.38629 1.38629 1.38629 0.03257 4.13380 4.13380 1.46634 0.26236 0.10148 2.33818 6 1.35146 0.84228 1.90761 1.82030 6 c - - : 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 7 3.65379 4.63408 0.05244 4.16836 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 8 3.25859 4.19817 0.07172 4.15150 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 9 3.39948 1.46022 3.20783 0.36531 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 10 0.10397 4.05347 2.79034 3.91276 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 11 4.26965 2.97867 4.15384 0.08398 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 12 4.26642 2.97826 4.15194 0.08409 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 13 4.26740 0.08204 4.16286 3.01215 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 14 1.58450 1.58330 1.99468 0.79055 14 u - - - 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 15 1.20718 1.26889 2.39904 1.11165 15 u - - - 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 16 1.85303 1.32827 1.19087 1.29336 16 g - - - 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 17 0.88069 3.30027 0.86720 2.05182 17 g - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 18 3.26186 4.20336 0.07138 4.15857 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 19 3.81231 1.53408 3.69334 0.30468 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.31065 4.38377 1.36824 1.46634 0.26236 1.09861 0.40547 20 1.84267 2.25652 1.01807 0.97923 20 u - - - 1.38629 1.38629 1.38629 1.38629 0.03348 4.10660 4.10660 1.46634 0.26236 0.09353 2.41591 21 0.24754 3.91797 1.75741 3.61522 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 22 0.10504 4.03684 2.78605 3.89232 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 23 4.23990 2.97489 4.13628 0.08495 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 24 0.53919 3.81224 1.00884 3.50534 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 25 0.10483 4.04010 2.78689 3.89632 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 26 3.14984 0.80504 2.93577 0.78311 26 u - - < 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 27 0.10477 4.04101 2.78713 3.89745 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.12025 4.38377 2.29443 1.46634 0.26236 1.09861 0.40547 28 0.98240 1.71172 1.86055 1.23979 28 a - - _ 1.38629 1.38629 1.38629 1.38629 0.34660 4.29128 1.27575 1.46634 0.26236 2.31051 0.10448 29 0.76421 2.55055 1.07722 2.15657 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03798 3.98267 3.98267 1.46634 0.26236 0.36816 1.17767 30 0.96038 2.17185 1.84984 1.06125 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02776 4.29128 4.29128 1.46634 0.26236 2.31051 0.10448 31 0.94700 2.32082 1.20118 1.54616 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.11175 4.29128 2.38548 1.46634 0.26236 2.31051 0.10448 32 1.77375 2.42401 2.78848 0.38533 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03015 4.20968 4.20968 1.46634 0.26236 2.76028 0.06536 33 1.76717 3.24501 0.30952 2.87493 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.12568 4.20968 2.27059 1.46634 0.26236 2.76028 0.06536 34 0.63675 1.86535 1.77908 1.91490 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03313 4.11713 4.11713 1.46634 0.26236 0.09643 2.38678 35 1.62030 1.11280 2.03214 1.07158 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 36 1.13092 2.19989 1.57398 1.02379 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 37 2.01241 1.03200 2.03085 0.97070 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 38 1.32643 1.20921 1.54724 1.49920 38 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 39 0.21138 3.35457 2.19337 3.12197 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 40 1.28000 1.62208 1.36666 1.31112 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 41 1.53277 1.79556 1.35012 1.02493 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 42 0.90292 1.73833 1.28739 1.94624 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.10128 4.38377 2.47880 1.46634 0.26236 1.09861 0.40547 43 1.34556 0.60492 2.83089 2.00598 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.11832 4.30973 2.32128 1.46634 0.26236 2.16553 0.12182 44 1.76208 1.68125 1.27075 1.01736 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.50559 0.96189 4.22122 1.35573 0.29808 0.14286 2.01646 45 4.08880 3.18053 3.84178 0.08314 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 46 0.85008 3.10098 0.74855 2.90841 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 47 4.07752 3.17830 3.83608 0.08358 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 48 3.66482 2.49243 3.57323 0.14662 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 49 0.09857 4.29686 2.79791 3.94683 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 50 4.00601 3.16362 3.79915 0.08650 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 51 3.68301 2.62146 3.62917 0.13283 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 52 2.67347 3.84016 0.12647 3.56491 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 53 4.31311 0.08662 4.07806 2.94418 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 54 3.28958 2.26166 3.09363 0.20676 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 55 2.57721 0.57682 3.21413 1.13276 60 C - - - 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 56 1.46102 3.26682 0.39232 2.91165 61 G - - - 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 57 0.05420 4.23819 3.88216 4.03329 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 58 3.29049 4.32169 0.07018 4.05912 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 59 0.09596 4.35125 2.80848 4.00013 64 A - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 60 0.09577 4.35545 2.80927 4.00425 65 A - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 61 4.13039 3.18862 3.86255 0.08156 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 62 0.40483 3.37480 1.36169 3.15921 67 A - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 63 4.32886 0.08609 4.08617 2.94694 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 64 1.22004 0.65955 2.84254 2.04467 69 C - - : 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 65 0.87694 0.95097 2.68766 2.04377 70 a - - : 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 66 0.94628 2.21927 1.84775 1.06265 71 a - - : 1.38629 1.38629 1.38629 1.38629 0.02527 4.38377 4.38377 1.46634 0.26236 1.09861 0.40547 67 3.57646 3.39127 4.11866 0.08111 72 U - - : 1.38629 1.38629 1.38629 1.38629 0.28253 4.38377 1.45393 1.46634 0.26236 1.09861 0.40547 68 2.22972 1.18934 2.78661 0.64171 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.03257 4.13380 4.13380 1.46634 0.26236 3.03133 0.04945 69 3.22535 4.16473 0.08260 3.72963 74 G - - : 1.38629 1.38629 1.38629 1.38629 0.03257 4.13380 4.13380 1.46634 0.26236 3.03133 0.04945 70 1.29488 1.61487 2.28946 0.85371 75 u - - : 1.38629 1.38629 1.38629 1.38629 0.01642 4.11765 * 1.46634 0.26236 0.00000 * //