INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-254 ACC RF00855 DESC mir-254 microRNA precursor family STATES 193 NODES 43 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 2 00:20:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates_2/RF00855/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.050781 CKSUM 1183898384 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 71.90 NC 69.60 EFP7GF -9.0654 0.71926 ECMLC 0.71139 -3.91632 3.91224 1600000 314658 0.003814 ECMGC 0.46794 -13.76061 -1.59930 1600000 118442 0.003377 ECMLI 0.66213 -2.82254 5.13953 1600000 233747 0.005134 ECMGI 0.48401 -9.54848 1.30163 1600000 76346 0.005239 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 99 -6.909 -8.155 -0.078 -4.608 IL 1 1 2 1 4 1 14 81 101 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 64 - a - - MR 3 2 3 5 3 1 17 79 99 -8.397 -0.018 -6.715 0.730 -1.434 0.501 -0.848 D 4 2 3 5 3 0 10 78 98 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 15 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 63 - g - - MR 6 5 3 8 5 1 16 78 98 -7.133 -0.038 -6.949 -7.161 -8.052 -0.269 -0.274 0.238 0.219 D 7 5 3 8 5 0 9 77 97 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 13 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 62 U A - - MP 9 8 3 13 6 2 17 77 97 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.300 -4.128 -4.126 -0.415 -3.045 -4.680 1.286 -3.748 -4.130 -0.177 -4.497 -2.023 3.378 -4.447 -0.718 -2.943 ML 10 8 3 13 6 1 11 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 10 76 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 6 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 12 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 13 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 61 A U - - MP 15 14 6 19 6 2 16 75 95 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -3.876 -2.886 -3.888 3.384 -4.269 -5.339 0.037 -3.925 -3.776 0.987 -4.328 -0.348 -0.380 -4.513 -1.904 -2.717 ML 16 14 6 19 6 1 10 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 10 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 6 72 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 12 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 12 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 60 C G - - MP 21 20 6 25 6 2 14 73 93 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.653 -4.568 -4.325 -0.790 -3.021 -4.723 3.582 -3.841 -4.378 -0.565 -4.628 -2.516 0.483 -4.715 -0.730 -3.214 ML 22 20 6 25 6 1 10 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 9 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 6 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 11 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 11 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 59 A U - - MP 27 26 6 31 6 2 13 71 91 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -3.876 -2.886 -3.888 3.384 -4.269 -5.339 0.037 -3.925 -3.776 0.987 -4.328 -0.348 -0.380 -4.513 -1.904 -2.717 ML 28 26 6 31 6 1 9 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 8 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 5 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 10 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 10 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 58 G C - - MP 33 32 6 37 4 2 11 69 89 -6.997 -7.204 -0.051 -5.618 -4.835 -3.138 -4.943 0.138 -5.363 -4.730 -0.705 -5.192 -4.388 3.660 -4.718 -0.841 -1.088 -4.529 -2.747 -3.818 ML 34 32 6 37 4 1 8 70 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 6 69 89 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 5 68 88 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 10 71 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 9 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - A - - - ML 39 38 6 41 3 1 9 67 87 -8.010 -0.020 -6.664 1.738 -2.464 -2.086 -2.015 D 40 38 6 41 3 0 5 66 85 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 8 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - A - - - ML 42 41 3 44 3 1 8 66 85 -8.397 -0.018 -6.715 1.738 -2.464 -2.086 -2.015 D 43 41 3 44 3 0 4 65 84 -5.620 -0.734 -1.403 IL 44 44 3 44 3 1 7 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 57 - A - - MR 45 44 3 47 3 1 8 65 84 -8.397 -0.018 -6.715 1.097 -1.111 -1.174 -0.066 D 46 44 3 47 3 0 2 63 83 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 7 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 56 - A - - MR 48 47 3 50 5 1 7 64 83 -7.133 -0.038 -6.949 -7.161 -8.052 1.171 -1.494 -0.193 -0.946 D 49 47 3 50 5 0 2 63 82 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 5 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 55 G C - - MP 51 50 3 55 6 2 7 63 82 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.835 -3.138 -4.943 0.138 -5.363 -4.730 -0.705 -5.192 -4.388 3.660 -4.718 -0.841 -1.088 -4.529 -2.747 -3.818 ML 52 50 3 55 6 1 3 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 3 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 4 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 5 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 54 C G - - MP 57 56 6 61 4 2 5 61 80 -6.909 -8.155 -0.078 -4.608 -4.653 -4.568 -4.325 -0.790 -3.021 -4.723 3.582 -3.841 -4.378 -0.565 -4.628 -2.516 0.483 -4.715 -0.730 -3.214 ML 58 56 6 61 4 1 2 60 80 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 2 60 80 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 58 78 -12.737 -14.007 -2.036 -0.404 IL 61 61 5 61 4 1 3 60 80 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 4 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 53 - c - - MR 63 62 6 65 5 1 5 59 78 -7.133 -0.038 -6.949 -7.161 -8.052 -0.896 0.998 -1.710 0.215 D 64 62 6 65 5 0 0 58 77 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 3 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 52 a u - - MP 66 65 3 70 6 2 6 58 77 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -3.400 -2.448 -3.503 2.861 -4.075 -4.824 0.153 -3.684 -3.382 1.521 -3.935 1.356 -0.101 -3.935 -1.735 -2.349 ML 67 65 3 70 6 1 2 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 2 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 2 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 2 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 51 u a - - MP 72 71 6 76 6 2 6 56 75 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -2.573 -2.621 -2.674 0.676 -2.240 -3.437 1.714 -2.749 -2.716 0.856 -3.225 -0.925 1.744 -2.841 0.878 1.176 ML 73 71 6 76 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 2 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 2 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 50 a u - - MP 78 77 6 82 6 2 6 54 73 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -2.486 -2.151 -2.645 2.097 -2.698 -3.531 1.050 0.174 -2.647 1.483 -3.171 0.881 0.800 -2.821 -0.671 -1.728 ML 79 77 6 82 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 2 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 2 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 49 G C - - MP 84 83 6 88 6 2 5 52 71 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.835 -3.138 -4.943 0.138 -5.363 -4.730 -0.705 -5.192 -4.388 3.660 -4.718 -0.841 -1.088 -4.529 -2.747 -3.818 ML 85 83 6 88 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 2 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 2 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 48 A U - - MP 90 89 6 94 6 2 5 50 69 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -3.876 -2.886 -3.888 3.384 -4.269 -5.339 0.037 -3.925 -3.776 0.987 -4.328 -0.348 -0.380 -4.513 -1.904 -2.717 ML 91 89 6 94 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 2 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 47 U A - - MP 96 95 6 100 6 2 5 48 67 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.300 -4.128 -4.126 -0.415 -3.045 -4.680 1.286 -3.748 -4.130 -0.177 -4.497 -2.023 3.378 -4.447 -0.718 -2.943 ML 97 95 6 100 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 46 U A - - MP 102 101 6 106 6 2 4 46 65 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.300 -4.128 -4.126 -0.415 -3.045 -4.680 1.286 -3.748 -4.130 -0.177 -4.497 -2.023 3.378 -4.447 -0.718 -2.943 ML 103 101 6 106 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 45 U A - - MP 108 107 6 112 4 2 2 44 63 -6.997 -7.204 -0.051 -5.618 -4.300 -4.128 -4.126 -0.415 -3.045 -4.680 1.286 -3.748 -4.130 -0.177 -4.497 -2.023 3.378 -4.447 -0.718 -2.943 ML 109 107 6 112 4 1 1 44 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 44 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 43 63 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 46 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - U - - - ML 114 113 6 116 3 1 1 42 61 -8.397 -0.018 -6.715 -0.839 -0.148 -1.591 1.142 D 115 113 6 116 3 0 0 40 60 -5.620 -0.734 -1.403 IL 116 116 3 116 3 1 1 42 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 44 - C - - MR 117 116 3 119 5 1 1 41 60 -7.133 -0.038 -6.949 -7.161 -8.052 -1.852 1.653 -2.679 -1.243 D 118 116 3 119 5 0 0 39 58 -5.352 -0.707 -2.978 -4.409 -2.404 IR 119 119 3 119 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 43 C G - - MP 120 119 3 124 6 2 2 40 59 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.653 -4.568 -4.325 -0.790 -3.021 -4.723 3.582 -3.841 -4.378 -0.565 -4.628 -2.516 0.483 -4.715 -0.730 -3.214 ML 121 119 3 124 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 42 A U - - MP 126 125 6 130 6 2 2 38 57 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -3.876 -2.886 -3.888 3.384 -4.269 -5.339 0.037 -3.925 -3.776 0.987 -4.328 -0.348 -0.380 -4.513 -1.904 -2.717 ML 127 125 6 130 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 41 C G - - MP 132 131 6 136 6 2 2 36 55 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.653 -4.568 -4.325 -0.790 -3.021 -4.723 3.582 -3.841 -4.378 -0.565 -4.628 -2.516 0.483 -4.715 -0.730 -3.214 ML 133 131 6 136 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 40 A U - - MP 138 137 6 142 4 2 2 34 53 -6.997 -7.204 -0.051 -5.618 -3.876 -2.886 -3.888 3.384 -4.269 -5.339 0.037 -3.925 -3.776 0.987 -4.328 -0.348 -0.380 -4.513 -1.904 -2.717 ML 139 137 6 142 4 1 1 34 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 35 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - u - - - ML 144 143 6 146 3 1 1 31 50 -8.397 -0.018 -6.715 0.075 -0.113 -1.093 0.635 D 145 143 6 146 3 0 0 30 49 -5.620 -0.734 -1.403 IL 146 146 3 146 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 39 - u - - MR 147 146 3 149 5 1 1 30 49 -7.133 -0.038 -6.949 -7.161 -8.052 -0.743 0.495 -1.527 0.719 D 148 146 3 149 5 0 0 29 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 149 149 3 149 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 38 a u - - MP 150 149 3 154 6 2 2 29 48 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -3.455 -2.494 -3.513 2.620 -3.929 -4.565 0.415 -3.729 -3.465 2.373 -3.969 -0.069 0.106 -3.777 -1.525 -2.387 ML 151 149 3 154 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 3 154 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 3 154 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 37 C G - - MP 156 155 6 160 4 2 2 27 46 -6.909 -8.155 -0.078 -4.608 -4.653 -4.568 -4.325 -0.790 -3.021 -4.723 3.582 -3.841 -4.378 -0.565 -4.628 -2.516 0.483 -4.715 -0.730 -3.214 ML 157 155 6 160 4 1 1 26 45 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 26 45 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 24 43 -12.737 -14.007 -2.036 -0.404 IL 160 160 5 160 4 1 1 27 45 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 36 - u - - MR 162 161 6 164 5 1 1 25 44 -7.133 -0.038 -6.949 -7.161 -8.052 0.052 -0.112 -1.102 0.653 D 163 161 6 164 5 0 0 24 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 164 164 3 164 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 26 35 C G - - MP 165 164 3 169 4 2 2 24 43 -1.823 -7.204 -0.879 -2.584 -4.653 -4.568 -4.325 -0.790 -3.021 -4.723 3.582 -3.841 -4.378 -0.565 -4.628 -2.516 0.483 -4.715 -0.730 -3.214 ML 166 164 3 169 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 3 169 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 3 169 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 23 42 -2.852 -3.535 -0.396 -6.020 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - A - - - ML 171 170 6 173 3 1 1 20 39 -7.798 -0.023 -6.452 1.636 -2.040 -1.705 -1.552 D 172 170 6 173 3 0 0 19 37 -7.376 -2.889 -0.219 IL 173 173 3 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - U - - - ML 174 173 3 176 3 1 1 19 37 -7.798 -0.023 -6.452 -1.186 -1.236 -1.902 1.520 D 175 173 3 176 3 0 0 18 36 -7.376 -0.514 -1.768 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - c - - - ML 177 176 3 179 3 1 1 17 36 -8.010 -0.020 -6.664 0.106 0.325 -1.119 0.276 D 178 176 3 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - u - - - ML 180 179 3 182 3 1 1 16 35 -8.010 -0.020 -6.664 -0.335 -0.180 -0.399 0.647 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - G - - - ML 183 182 3 185 3 1 1 15 33 -8.010 -0.020 -6.664 -1.678 -2.913 1.745 -2.300 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - A - - - ML 186 185 3 188 3 1 1 13 31 -8.010 -0.020 -6.664 1.738 -2.464 -2.086 -2.015 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - a - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 0.577 -0.889 -0.194 0.130 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-254 ACC RF00855 DESC mir-254 microRNA precursor family LENG 63 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 2 00:20:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates_2/RF00855/CM NSEQ 4 EFFN 3.074219 CKSUM 1183898384 STATS LOCAL MSV -8.5967 0.71926 STATS LOCAL VITERBI -8.6957 0.71926 STATS LOCAL FORWARD -3.9462 0.71926 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29455 1.47333 1.45937 1.33017 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 0.00000 * 1 3.34981 2.19939 3.14415 0.20957 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 2 0.23070 3.18117 2.12732 3.09384 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 3 3.53211 0.17142 3.34662 2.37425 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 4 0.23061 3.18174 2.12745 3.09460 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 5 2.79498 3.56088 0.12759 3.49803 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 6 0.10948 3.56337 3.25691 3.30101 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 7 0.10948 3.56337 3.25691 3.30101 7 A - - - 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 8 2.79733 3.56404 0.12718 3.50234 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 9 3.53747 0.17101 3.34941 2.37525 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 10 0.58309 2.98179 1.11232 2.77526 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 11 2.26177 1.57596 2.08786 0.57080 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 12 1.05851 1.54630 1.17496 2.03132 12 a - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 13 2.79330 3.55863 0.12789 3.49496 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 14 0.23085 3.18023 2.12710 3.09256 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 15 3.35224 2.19961 3.14536 0.20937 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 16 3.35188 2.19958 3.14518 0.20940 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 17 3.35146 2.19954 3.14497 0.20943 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 18 2.19940 1.49179 2.73349 0.51221 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 19 3.53537 0.17117 3.34831 2.37486 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 20 0.23033 3.18342 2.12784 3.09688 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 21 3.53601 0.17112 3.34865 2.37498 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 22 0.23045 3.18267 2.12767 3.09587 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 23 1.34687 1.44185 2.25051 0.92102 23 u - - - 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 24 0.74429 2.68573 0.97206 2.54520 24 a - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 25 3.53782 0.17098 3.34958 2.37531 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 26 3.50547 0.17350 3.33266 2.36924 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.66558 1.16633 1.74575 0.11258 2.23986 1.09861 0.40547 27 0.16049 3.20689 2.93415 2.90742 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04393 3.84025 3.84025 1.46634 0.26236 2.45332 0.08993 28 2.57962 2.54876 3.09577 0.22217 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04393 3.84025 3.84025 1.46634 0.26236 0.18876 1.76018 29 1.33118 1.08538 2.28935 1.21493 30 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 30 1.71465 1.49607 1.65070 0.90622 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 31 3.02561 3.94391 0.10273 3.51566 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 32 0.10948 3.56337 3.25691 3.30101 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 33 0.95673 2.09620 1.50949 1.30229 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 34 2.65867 3.52006 0.14660 3.30443 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 35 1.36630 1.44131 2.25789 0.90693 36 u - - - 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 36 2.65986 3.52186 0.14635 3.30649 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 37 2.78187 1.10074 2.49582 0.64813 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 38 2.10616 0.95874 2.67300 0.85361 39 u - - - 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 39 3.31944 2.46000 2.99184 0.18850 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 40 2.65755 3.51835 0.14683 3.30247 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 41 3.32749 2.46125 2.99525 0.18782 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 42 2.66267 3.52613 0.14577 3.31138 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 43 3.23734 0.13719 3.80789 2.70711 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 44 0.23747 3.33434 2.03582 3.09738 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 45 0.23741 3.33476 2.03589 3.09785 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 46 0.23734 3.33530 2.03597 3.09845 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 47 3.31308 2.45900 2.98913 0.18905 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 48 3.68242 0.15249 3.40313 2.48889 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 49 2.25262 1.77457 1.99502 0.52880 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 50 1.40044 2.25473 1.09558 1.15752 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 51 3.00023 1.93193 2.78579 0.29615 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 52 2.25861 0.58087 2.85403 1.27841 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 53 2.65980 3.52177 0.14637 3.30638 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 54 3.71229 0.15056 3.41713 2.49442 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 55 0.49706 2.66251 1.50527 2.30306 56 A - - - 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 56 0.54895 2.31018 2.36850 1.47152 57 A - - - 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 57 3.68363 0.15241 3.40370 2.48912 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 58 3.31779 2.45974 2.99113 0.18865 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 59 2.65662 3.51696 0.14702 3.30087 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 60 3.32497 2.46086 2.99418 0.18803 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 61 0.23591 3.34596 2.03762 3.11042 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 62 1.67160 1.56632 1.14339 1.25700 63 g - - : 1.38629 1.38629 1.38629 1.38629 0.03693 4.01031 4.01031 1.46634 0.26236 1.09861 0.40547 63 0.82983 2.60931 0.96460 2.21499 64 a - - : 1.38629 1.38629 1.38629 1.38629 0.01863 3.99202 * 1.46634 0.26236 0.00000 * //