INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-62 ACC RF00847 DESC mir-62 microRNA precursor family STATES 178 NODES 38 CLEN 58 W 73 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 20:31:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00847/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.957031 CKSUM 2595561178 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 85.30 NC 66.50 EFP7GF -9.3661 0.71940 ECMLC 0.65146 -5.26966 3.70488 1600000 415235 0.002890 ECMGC 0.42211 -16.48413 -1.62401 1600000 211948 0.001887 ECMLI 0.59107 -4.86895 4.58867 1600000 321328 0.003735 ECMGI 0.44098 -12.13781 0.97872 1600000 130043 0.003076 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 73 92 -6.875 -8.120 -0.080 -4.574 IL 1 1 2 1 4 1 3 75 94 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 4 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 58 - G - - MR 3 2 3 5 3 1 6 73 92 -8.365 -0.019 -6.682 -1.603 -2.827 1.729 -2.214 D 4 2 3 5 3 0 0 72 91 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 4 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 57 - A - - MR 6 5 3 8 5 1 5 72 91 -7.103 -0.039 -6.918 -7.130 -8.022 1.724 -2.393 -2.023 -1.937 D 7 5 3 8 5 0 0 71 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 2 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 56 G C - - MP 9 8 3 13 6 2 6 71 90 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.766 -3.106 -4.868 0.184 -5.267 -4.703 -0.626 -5.112 -4.344 3.644 -4.679 -0.805 -1.010 -4.484 -2.664 -3.744 ML 10 8 3 13 6 1 1 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 2 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 2 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 55 U A - - MP 15 14 6 19 6 2 6 69 88 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.220 -4.046 -4.055 -0.338 -2.991 -4.616 1.339 -3.688 -4.059 -0.089 -4.431 -1.944 3.342 -4.370 -0.666 -2.881 ML 16 14 6 19 6 1 1 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 2 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 2 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 54 G U - - MP 21 20 6 25 6 2 6 67 86 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.631 -2.397 -3.799 1.125 -4.527 -5.251 -0.130 -3.820 -3.457 1.338 -3.979 3.099 -0.488 -4.457 -2.072 -2.496 ML 22 20 6 25 6 1 1 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 2 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 2 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 53 a u - - MP 27 26 6 31 6 2 5 65 84 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.350 -2.364 -3.468 2.452 -4.059 -4.747 0.183 -3.646 -3.324 1.593 -3.864 2.043 -0.073 -3.885 -1.707 -2.302 ML 28 26 6 31 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 52 G C - - MP 33 32 6 37 6 2 5 63 82 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.766 -3.106 -4.868 0.184 -5.267 -4.703 -0.626 -5.112 -4.344 3.644 -4.679 -0.805 -1.010 -4.484 -2.664 -3.744 ML 34 32 6 37 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 51 U G - - MP 39 38 6 43 6 2 5 61 80 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.115 -4.036 -3.811 -0.368 -2.561 -4.232 1.726 -3.337 -3.852 -0.180 -4.141 -2.037 0.873 -4.198 3.021 -2.722 ML 40 38 6 43 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 50 U A - - MP 45 44 6 49 6 2 4 59 78 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.220 -4.046 -4.055 -0.338 -2.991 -4.616 1.339 -3.688 -4.059 -0.089 -4.431 -1.944 3.342 -4.370 -0.666 -2.881 ML 46 44 6 49 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 49 A U - - MP 51 50 6 55 6 2 4 57 76 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.814 -2.840 -3.831 3.346 -4.181 -5.245 0.121 -3.872 -3.722 1.054 -4.271 -0.312 -0.297 -4.429 -1.820 -2.664 ML 52 50 6 55 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 48 G C - - MP 57 56 6 61 6 2 4 55 74 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.766 -3.106 -4.868 0.184 -5.267 -4.703 -0.626 -5.112 -4.344 3.644 -4.679 -0.805 -1.010 -4.484 -2.664 -3.744 ML 58 56 6 61 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 47 A U - - MP 63 62 6 67 6 2 3 53 72 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.814 -2.840 -3.831 3.346 -4.181 -5.245 0.121 -3.872 -3.722 1.054 -4.271 -0.312 -0.297 -4.429 -1.820 -2.664 ML 64 62 6 67 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 46 U A - - MP 69 68 6 73 4 2 2 51 70 -6.959 -7.166 -0.053 -5.580 -4.220 -4.046 -4.055 -0.338 -2.991 -4.616 1.339 -3.688 -4.059 -0.089 -4.431 -1.944 3.342 -4.370 -0.666 -2.881 ML 70 68 6 73 4 1 1 52 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 1 53 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - c - - - ML 75 74 6 77 3 1 1 49 68 -7.975 -0.020 -6.629 0.038 0.839 -1.343 -0.339 D 76 74 6 77 3 0 0 47 67 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 13 - u - - - ML 78 77 3 80 3 1 1 47 67 -8.365 -0.019 -6.682 -0.713 0.448 -1.492 0.741 D 79 77 3 80 3 0 0 46 65 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 45 - A - - MR 81 80 3 83 3 1 1 46 66 -8.365 -0.019 -6.682 1.724 -2.393 -2.023 -1.937 D 82 80 3 83 3 0 0 45 64 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 44 - U - - MR 84 83 3 86 5 1 1 45 65 -7.103 -0.039 -6.918 -7.130 -8.022 -1.505 -1.498 -2.240 1.624 D 85 83 3 86 5 0 0 44 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 43 C G - - MP 87 86 3 91 6 2 2 44 64 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.578 -4.487 -4.263 -0.716 -2.975 -4.671 3.560 -3.788 -4.313 -0.480 -4.571 -2.434 0.537 -4.645 -0.682 -3.152 ML 88 86 3 91 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 42 a u - - MP 93 92 6 97 6 2 2 42 62 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.355 -2.417 -3.458 2.809 -4.002 -4.750 0.222 -3.642 -3.343 1.567 -3.893 1.369 -0.037 -3.873 -1.666 -2.310 ML 94 92 6 97 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 41 U A - - MP 99 98 6 103 6 2 2 40 60 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.220 -4.046 -4.055 -0.338 -2.991 -4.616 1.339 -3.688 -4.059 -0.089 -4.431 -1.944 3.342 -4.370 -0.666 -2.881 ML 100 98 6 103 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 40 A U - - MP 105 104 6 109 6 2 2 38 57 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.814 -2.840 -3.831 3.346 -4.181 -5.245 0.121 -3.872 -3.722 1.054 -4.271 -0.312 -0.297 -4.429 -1.820 -2.664 ML 106 104 6 109 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 39 U A - - MP 111 110 6 115 6 2 2 36 55 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.220 -4.046 -4.055 -0.338 -2.991 -4.616 1.339 -3.688 -4.059 -0.089 -4.431 -1.944 3.342 -4.370 -0.666 -2.881 ML 112 110 6 115 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 38 C G - - MP 117 116 6 121 4 2 2 34 53 -6.959 -7.166 -0.053 -5.580 -4.578 -4.487 -4.263 -0.716 -2.975 -4.671 3.560 -3.788 -4.313 -0.480 -4.571 -2.434 0.537 -4.645 -0.682 -3.152 ML 118 116 6 121 4 1 1 35 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 35 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 34 53 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 36 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - C - - - ML 123 122 6 125 3 1 1 32 51 -8.365 -0.019 -6.682 -1.767 1.631 -2.591 -1.175 D 124 122 6 125 3 0 0 31 49 -5.620 -0.734 -1.403 IL 125 125 3 125 3 1 1 33 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 37 - U - - MR 126 125 3 128 3 1 1 31 50 -8.365 -0.019 -6.682 -1.505 -1.498 -2.240 1.624 D 127 125 3 128 3 0 0 29 48 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 32 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 36 - A - - MR 129 128 3 131 5 1 1 30 49 -7.103 -0.039 -6.918 -7.130 -8.022 1.724 -2.393 -2.023 -1.937 D 130 128 3 131 5 0 0 28 47 -5.352 -0.707 -2.978 -4.409 -2.404 IR 131 131 3 131 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 35 U A - - MP 132 131 3 136 6 2 2 29 48 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.220 -4.046 -4.055 -0.338 -2.991 -4.616 1.339 -3.688 -4.059 -0.089 -4.431 -1.944 3.342 -4.370 -0.666 -2.881 ML 133 131 3 136 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 34 u a - - MP 138 137 6 142 6 2 2 27 46 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.018 -2.971 -3.089 0.470 -2.567 -3.854 1.536 -3.090 -3.115 0.707 -3.613 -1.105 2.739 -3.274 -0.379 0.200 ML 139 137 6 142 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 33 C G - - MP 144 143 6 148 6 2 2 25 44 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.578 -4.487 -4.263 -0.716 -2.975 -4.671 3.560 -3.788 -4.313 -0.480 -4.571 -2.434 0.537 -4.645 -0.682 -3.152 ML 145 143 6 148 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 32 C G - - MP 150 149 6 154 6 2 2 23 42 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.578 -4.487 -4.263 -0.716 -2.975 -4.671 3.560 -3.788 -4.313 -0.480 -4.571 -2.434 0.537 -4.645 -0.682 -3.152 ML 151 149 6 154 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 31 G U - - MP 156 155 6 160 4 2 2 21 39 -6.959 -7.166 -0.053 -5.580 -3.631 -2.397 -3.799 1.125 -4.527 -5.251 -0.130 -3.820 -3.457 1.338 -3.979 3.099 -0.488 -4.457 -2.072 -2.496 ML 157 155 6 160 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - C - - - ML 162 161 6 164 3 1 1 18 36 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 163 161 6 164 3 0 0 17 36 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - u - - - ML 165 164 3 167 3 1 1 16 35 -7.975 -0.020 -6.629 0.165 -0.790 -0.276 0.560 D 166 164 3 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - U - - - ML 168 167 3 170 3 1 1 15 33 -7.975 -0.020 -6.629 -0.024 -0.877 -1.247 1.036 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - A - - - ML 171 170 3 173 3 1 1 13 31 -7.975 -0.020 -6.629 1.166 -1.465 -0.211 -0.917 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - A - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 1.724 -2.393 -2.023 -1.937 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-62 ACC RF00847 DESC mir-62 microRNA precursor family LENG 58 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 20:31:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00847/CM NSEQ 4 EFFN 2.863281 CKSUM 2595561178 STATS LOCAL MSV -8.0528 0.71940 STATS LOCAL VITERBI -8.3663 0.71940 STATS LOCAL FORWARD -3.9803 0.71940 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.33045 1.56751 1.44268 1.23517 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 0.00000 * 1 2.73415 3.47115 0.13832 3.40663 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 2 3.24486 2.11433 3.02617 0.23343 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 3 2.03094 3.13585 0.25509 2.98623 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 4 0.88511 2.92939 0.75799 2.72883 4 g - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 5 2.73752 3.47554 0.13769 3.41263 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 6 3.14762 1.69605 2.96860 0.32536 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 7 3.24467 2.11431 3.02608 0.23345 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 8 0.25671 3.06756 2.04516 2.98554 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 9 2.73609 3.47367 0.13796 3.41007 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 10 0.25679 3.06711 2.04506 2.98492 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 11 3.24256 2.11414 3.02506 0.23364 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 12 1.40513 0.68519 2.52661 1.76760 12 C - - - 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 13 2.06400 1.00009 2.62440 0.83765 13 u - - - 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 14 3.44189 0.18778 3.24499 2.30026 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 15 0.62236 2.88971 1.07827 2.69492 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 16 3.24967 2.11472 3.02849 0.23300 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 17 0.25633 3.06956 2.04560 2.98830 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 18 3.24759 2.11455 3.02749 0.23318 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 19 3.43920 0.18801 3.24362 2.29976 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 20 3.13285 0.15183 3.70663 2.62123 20 C - - - 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 21 3.24837 2.11461 3.02787 0.23311 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 22 2.40498 1.70734 2.18395 0.48485 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 23 3.44299 0.18769 3.24555 2.30046 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 24 3.44184 0.18779 3.24497 2.30025 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 25 2.03116 3.13635 0.25498 2.98686 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 26 3.13285 0.15183 3.70663 2.62123 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 27 1.27751 2.01889 1.56583 0.96876 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 28 1.44257 2.13997 2.41193 0.58630 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 29 0.50445 2.61746 1.52203 2.25470 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 30 0.12012 3.47613 3.17760 3.20469 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 31 3.19192 2.10362 2.93019 0.24398 31 U - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 32 2.58085 3.41339 0.16156 3.20529 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 33 2.58222 3.41541 0.16125 3.20763 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 34 0.70373 2.36317 1.53748 1.62851 34 a - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 35 0.26313 3.22446 1.95234 3.00296 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 36 0.12012 3.47613 3.17760 3.20469 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 37 2.83444 2.76077 3.35992 0.17047 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 38 2.57903 3.41071 0.16198 3.20219 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 39 0.26435 3.21649 1.95120 2.99383 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 40 3.21339 2.36774 2.87957 0.21081 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 41 0.26392 3.21928 1.95160 2.99703 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 42 2.91277 1.86361 2.68747 0.32502 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 43 2.58676 3.42213 0.16022 3.21543 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 44 2.83444 2.76077 3.35992 0.17047 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 45 0.12012 3.47613 3.17760 3.20469 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 46 0.26491 3.21284 1.95068 2.98965 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 47 3.20489 2.36647 2.87605 0.21162 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 48 3.59684 0.16450 3.31301 2.43190 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 49 3.20623 2.36668 2.87661 0.21149 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 50 0.26468 3.21433 1.95089 2.99136 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 51 2.26268 3.14955 0.22653 2.88663 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 52 3.60352 0.16403 3.31612 2.43316 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 53 2.94031 1.86347 2.72410 0.31964 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 54 3.19505 2.10388 2.93161 0.24367 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 55 0.26379 3.22010 1.95172 2.99797 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 56 3.62404 0.16258 3.32559 2.43699 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 57 0.12012 3.47613 3.17760 3.20469 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.03889 3.95947 3.95947 1.46634 0.26236 1.09861 0.40547 58 2.93970 3.84812 0.11301 3.42163 58 G - - : 1.38629 1.38629 1.38629 1.38629 0.01964 3.94022 * 1.46634 0.26236 0.00000 * //