# STOCKHOLM 1.0
#=GF ID mir-357
#=GF AC RF00791
#=GF DE mir-357 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 49.4
#=GF NC 49.3
#=GF TC 69.0
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000227;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 15317971
#=GF RT Patterns of flanking sequence conservation and a characteristic upstream
#=GF RT motif for microRNA gene identification.
#=GF RA Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB
#=GF RL RNA. 2004;10:1309-1322.
#=GF RN [2]
#=GF RM 17174894
#=GF RT Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
#=GF RT endogenous siRNAs in C. elegans.
#=GF RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP
#=GF RL Cell. 2006;127:1193-1207.
#=GF RN [3]
#=GF RM 19460142
#=GF RT Dynamic expression of small non-coding RNAs, including novel microRNAs and
#=GF RT piRNAs/21U-RNAs, during Caenorhabditis elegans development.
#=GF RA Kato M, de Lencastre A, Pincus Z, Slack FJ
#=GF RL Genome Biol. 2009;10:R54.
#=GF RN [4]
#=GF RM 20062054
#=GF RT Comprehensive discovery of endogenous Argonaute binding sites in
#=GF RT Caenorhabditis elegans.
#=GF RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
#=GF RA GW
#=GF RL Nat Struct Mol Biol. 2010;17:173-179.
#=GF RN [5]
#=GF RM 21307183
#=GF RT Improved annotation of C. elegans microRNAs by deep sequencing reveals
#=GF RT structures associated with processing by Drosha and Dicer.
#=GF RA Warf MB, Johnson WE, Bass BL
#=GF RL RNA. 2011;17:563-577.
#=GF RN [6]
#=GF RM 19755563
#=GF RT Repertoire and evolution of miRNA genes in four divergent nematode
#=GF RT species.
#=GF RA de Wit E, Linsen SE, Cuppen E, Berezikov E
#=GF RL Genome Res. 2009;19:2064-2074.
#=GF RN [7]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF WK MicroRNA
#=GF SQ 5

URS00000A2F0E_6239/19-90  GCGGAUCCCUACAA-CGCUGCGCAUAUGCAUGAA-CACAAUGAA-AAUGUAAAUGCCAGUCGUUGCAGGAGUUCG
URS0000D541E7_31234/22-94 GCGGAUUCCAGUAA-CUCUGAGCAUAUACAUGAAGUUUCAAAAC-AAUGUAAAUGCCAGUCGUUGCUGGAAUUCG
URS0000D55329_135651/1-62 ------CCCUGUAA-UACUGUGCAUAUACAUGU--CAUACAACU-AAUGUAAAUGCCAGUCGUUGCAGGAAU---
URS0000D541F6_135651/1-62 ------CCCUGUAA-UACUGUGCAUAUACAUGU--CAUGUAACU-AAUGUAAAUGCCAGUCGUUGCAGGAAU---
URS000098985B_6238/18-92  GCGAAUCCCGGCAAUCACCGUGCAUUUUCAUCUACCAGAGGCACUAAUGAAAAUGCCAGUCAUUGACGGAAUUCG
#=GC SS_cons              :::::::<<<-<<<.<<<<<-<<<<-<<<<<___._________._>>>>>->>>>>>>>->>>>->>>::::::
#=GC RF                   GCGgAUCCCuGcAA.caCuGuGCAUAUaCAUGuA.CAuaaaaau.AAUGuAAAUGCCaGuCgUUgcaGGAAUUCG
//
