INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-288 ACC RF00787 DESC mir-288 microRNA precursor family STATES 292 NODES 67 CLEN 96 W 114 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 11 05:42:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00787/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 12 EFFN 0.881836 CKSUM 3953006746 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 61.90 NC 37.30 EFP7GF -7.0060 0.71871 ECMLC 0.62348 -5.34672 3.40993 1600000 281993 0.004255 ECMGC 0.41300 -15.41198 -2.93169 1600000 69272 0.005774 ECMLI 0.61479 -3.07575 5.27945 1600000 204190 0.005877 ECMGI 0.46951 -8.44756 1.50785 1600000 42858 0.009333 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 114 135 -6.404 -7.649 -0.194 -3.201 IL 1 1 2 1 4 2 40 115 136 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 41 116 136 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 98 - G - - MR 3 2 3 5 5 3 41 114 135 -6.633 -0.092 -6.448 -4.850 -7.552 -0.472 -1.475 1.246 -0.870 D 4 2 3 5 5 0 35 112 133 -5.569 -0.750 -3.195 -3.152 -2.621 IR 5 5 3 5 5 2 40 114 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 97 G C - - MP 6 5 3 10 6 4 41 113 134 -8.907 -8.846 -0.024 -7.623 -7.902 -8.297 -3.311 -1.455 -3.381 1.050 -3.583 -3.991 0.690 -3.649 -3.328 3.078 -3.768 -0.149 0.372 -3.393 -1.238 -2.348 ML 7 5 3 10 6 1 37 111 132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 36 111 132 -7.237 -5.966 -1.875 -5.944 -0.661 -4.158 0.067 0.263 -0.621 0.141 D 9 5 3 10 6 0 31 109 130 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 38 112 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 2 39 112 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 96 G C - - MP 12 11 6 16 6 4 40 111 132 -8.907 -8.846 -0.024 -7.623 -7.902 -8.297 -3.713 -2.616 -3.766 0.842 -3.782 -4.239 0.625 -3.892 -3.573 3.238 -3.992 -0.301 0.197 -3.773 -1.370 -2.658 ML 13 11 6 16 6 1 36 109 130 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 35 109 130 -7.237 -5.966 -1.875 -5.944 -0.661 -4.158 0.067 0.263 -0.621 0.141 D 15 11 6 16 6 0 31 107 128 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 37 111 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 37 110 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 95 c g - - MP 18 17 6 22 6 4 38 109 130 -8.907 -8.846 -0.024 -7.623 -7.902 -8.297 -2.578 -2.519 -1.647 0.903 -2.166 -3.395 2.288 -2.685 -2.697 1.278 -3.187 -0.682 1.449 -2.806 0.693 -1.697 ML 19 17 6 22 6 1 35 108 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 33 108 128 -7.237 -5.966 -1.212 -5.944 -1.078 -4.158 0.176 -0.699 0.459 -0.184 D 21 17 6 22 6 0 30 106 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 36 109 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 36 108 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 94 C G - - MP 24 23 6 28 4 2 36 107 128 -6.438 -6.645 -0.076 -5.060 -3.700 -3.500 -3.520 0.169 -2.463 -4.037 3.156 -3.178 -3.553 0.595 -3.892 -1.435 1.118 -3.815 -0.161 -2.427 ML 25 23 6 28 4 1 34 107 128 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 4 1 31 106 127 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 27 23 6 28 4 0 30 105 126 -4.568 -4.250 -2.265 -0.520 IL 28 28 5 28 4 1 35 108 129 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 29 29 6 29 3 1 35 107 128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 30 29 6 32 3 1 34 105 125 -7.924 -0.025 -6.242 0.936 -1.052 -0.173 -0.478 D 31 29 6 32 3 0 29 103 124 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 33 105 126 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 93 - C - - MR 33 32 3 35 5 1 34 104 124 -6.696 -0.052 -6.511 -6.723 -7.615 -0.709 1.163 -1.472 -0.344 D 34 32 3 35 5 0 27 102 123 -5.352 -0.707 -2.978 -4.409 -2.404 IR 35 35 3 35 5 1 31 104 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 92 u a - - MP 36 35 3 40 6 2 34 103 123 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -2.316 -2.380 -2.449 0.907 -1.108 -3.258 1.796 -2.580 -1.759 1.062 -3.024 -0.699 2.243 -2.601 -0.033 -1.552 ML 37 35 3 40 6 1 28 101 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 28 101 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 3 40 6 0 23 98 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 30 102 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 31 102 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 91 G C - - MP 42 41 6 46 6 2 33 101 121 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.855 -2.681 -3.911 0.757 -3.984 -4.310 0.449 -4.059 -3.688 3.321 -4.096 -0.366 0.030 -3.872 -1.550 -2.802 ML 43 41 6 46 6 1 28 99 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 27 99 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 22 96 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 29 100 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 30 100 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 90 u a - - MP 48 47 6 52 6 2 31 99 119 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.408 -3.171 -3.321 0.465 -2.455 -3.948 1.848 -3.084 -3.338 0.902 -3.744 -1.082 2.730 -3.577 -0.151 -2.225 ML 49 47 6 52 6 1 27 97 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 26 97 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 22 94 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 28 98 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 28 98 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 89 C G - - MP 54 53 6 58 6 2 29 97 117 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.700 -3.500 -3.520 0.169 -2.463 -4.037 3.156 -3.178 -3.553 0.595 -3.892 -1.435 1.118 -3.815 -0.161 -2.427 ML 55 53 6 58 6 1 26 95 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 25 95 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 21 93 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 27 96 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 27 96 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 88 g c - - MP 60 59 6 64 6 2 27 95 115 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -2.600 -1.935 -2.768 1.307 -2.852 -3.517 1.146 -2.961 -2.689 2.018 -1.749 1.610 0.830 -2.900 -0.683 -1.757 ML 61 59 6 64 6 1 25 94 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 23 93 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 21 91 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 26 94 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 26 94 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 87 u a - - MP 66 65 6 70 4 2 25 93 113 -6.438 -6.645 -0.076 -5.060 -3.408 -3.171 -3.321 0.465 -2.455 -3.948 1.848 -3.084 -3.338 0.902 -3.744 -1.082 2.730 -3.577 -0.151 -2.225 ML 67 65 6 70 4 1 23 93 113 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 22 92 113 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 20 91 112 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 25 94 115 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 24 93 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 72 71 6 74 3 1 24 90 111 -7.498 -0.029 -6.152 1.422 -1.470 -1.190 -0.939 D 73 71 6 74 3 0 19 89 109 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 23 92 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - A - - - ML 75 74 3 77 3 1 23 89 110 -7.498 -0.029 -6.152 1.422 -1.470 -1.190 -0.939 D 76 74 3 77 3 0 19 88 108 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 23 91 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - U - - - ML 78 77 3 80 3 1 22 88 108 -7.498 -0.029 -6.152 -0.686 -0.839 -1.361 1.281 D 79 77 3 80 3 0 18 87 107 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 22 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - U - - - ML 81 80 3 83 3 1 21 87 107 -7.924 -0.025 -6.242 -0.686 -0.839 -1.361 1.281 D 82 80 3 83 3 0 17 86 106 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 21 88 108 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 86 - C - - MR 84 83 3 86 3 1 20 86 106 -7.924 -0.025 -6.242 -0.709 1.163 -1.472 -0.344 D 85 83 3 86 3 0 15 84 105 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 20 87 107 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 85 - U - - MR 87 86 3 89 5 1 19 85 105 -6.696 -0.052 -6.511 -6.723 -7.615 -0.686 -0.839 -1.361 1.281 D 88 86 3 89 5 0 15 84 104 -5.352 -0.707 -2.978 -4.409 -2.404 IR 89 89 3 89 5 1 18 85 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 84 a u - - MP 90 89 3 94 6 2 19 84 104 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.181 -2.386 -3.230 2.669 -3.256 -4.293 1.017 -3.294 -3.156 1.770 -3.669 0.016 0.587 -3.585 -0.934 -2.108 ML 91 89 3 94 6 1 16 83 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 14 83 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 11 81 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 17 84 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 17 83 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 83 g u - - MP 96 95 6 100 4 2 17 82 102 -6.438 -6.645 -0.076 -5.060 -3.104 -2.134 -3.219 1.386 -3.507 -4.291 0.779 -3.322 -3.049 2.037 -3.552 2.190 0.415 -3.574 -1.157 -2.052 ML 97 95 6 100 4 1 14 82 103 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 12 82 102 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 11 81 101 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 16 83 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 15 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - C - - - ML 102 101 6 104 3 1 15 80 100 -7.924 -0.025 -6.242 -0.709 1.163 -1.472 -0.344 D 103 101 6 104 3 0 10 78 99 -5.620 -0.734 -1.403 IL 104 104 3 104 3 1 14 80 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 82 - A - - MR 105 104 3 107 5 1 15 79 99 -6.696 -0.052 -6.511 -6.723 -7.615 1.422 -1.470 -1.190 -0.939 D 106 104 3 107 5 0 8 77 97 -5.352 -0.707 -2.978 -4.409 -2.404 IR 107 107 3 107 5 1 12 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 81 g c - - MP 108 107 3 112 6 2 14 78 98 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -2.188 -0.672 -2.337 1.262 -2.417 -3.069 1.230 -2.676 -2.403 2.287 -2.886 -0.055 1.008 -1.087 -0.427 -1.490 ML 109 107 3 112 6 1 9 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 3 112 6 1 8 76 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 3 112 6 0 4 74 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 11 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 11 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 80 g u - - MP 114 113 6 118 6 2 13 76 96 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.104 -2.134 -3.219 1.386 -3.507 -4.291 0.779 -3.322 -3.049 2.037 -3.552 2.190 0.415 -3.574 -1.157 -2.052 ML 115 113 6 118 6 1 9 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 7 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 4 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 10 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 10 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 79 g c - - MP 120 119 6 124 6 2 11 74 94 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -2.171 -1.981 -2.327 1.673 -2.274 -3.133 1.479 -1.863 -2.368 1.678 -2.883 0.257 1.214 -2.448 -0.254 -0.540 ML 121 119 6 124 6 1 8 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 6 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 3 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 9 73 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 9 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 78 g u - - MP 126 125 6 130 4 2 9 72 92 -6.438 -6.645 -0.076 -5.060 -3.104 -2.134 -3.219 1.386 -3.507 -4.291 0.779 -3.322 -3.049 2.037 -3.552 2.190 0.415 -3.574 -1.157 -2.052 ML 127 125 6 130 4 1 6 72 92 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 4 71 92 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 3 70 91 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 8 73 93 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 8 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - c - - - ML 132 131 6 134 3 1 7 69 89 -7.498 -0.029 -6.152 -0.473 0.816 -1.227 0.126 D 133 131 6 134 3 0 2 68 88 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 7 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - A - - - ML 135 134 3 137 3 1 7 68 88 -7.498 -0.029 -6.152 1.200 -1.111 -0.986 -0.443 D 136 134 3 137 3 0 2 67 87 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 6 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - c - - - ML 138 137 3 140 3 1 6 67 87 -7.498 -0.029 -6.152 -0.342 0.804 -0.872 -0.121 D 139 137 3 140 3 0 1 66 86 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 5 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - a - - - ML 141 140 3 143 3 1 5 66 86 -7.924 -0.025 -6.242 0.745 -1.020 0.123 -0.431 D 142 140 3 143 3 0 1 65 85 -5.620 -0.734 -1.403 IL 143 143 3 143 3 1 4 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 77 - A - - MR 144 143 3 146 3 1 5 65 85 -7.924 -0.025 -6.242 1.422 -1.470 -1.190 -0.939 D 145 143 3 146 3 0 0 63 83 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 3 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 76 - G - - MR 147 146 3 149 3 1 4 64 84 -7.924 -0.025 -6.242 -0.614 -1.651 1.346 -1.041 D 148 146 3 149 3 0 0 62 82 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 3 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 75 - C - - MR 150 149 3 152 5 1 4 63 83 -6.696 -0.052 -6.511 -6.723 -7.615 -0.709 1.163 -1.472 -0.344 D 151 149 3 152 5 0 0 62 82 -5.352 -0.707 -2.978 -4.409 -2.404 IR 152 152 3 152 5 1 2 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 28 74 g c - - MP 153 152 3 157 6 2 5 62 82 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -2.986 -2.110 -3.097 1.808 -3.400 -4.159 0.839 -3.259 -2.990 2.040 -3.502 1.761 0.528 -3.397 -1.078 -1.973 ML 154 152 3 157 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 3 157 6 1 1 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 3 157 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 2 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 29 73 C G - - MP 159 158 6 163 6 2 5 60 80 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.229 -3.097 -2.001 0.416 -2.615 -3.937 3.065 -3.195 -3.292 0.827 -3.734 -1.155 1.018 -3.432 -0.400 -2.248 ML 160 158 6 163 6 1 1 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 30 72 g c - - MP 165 164 6 169 6 2 4 58 78 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -2.961 -2.122 -3.067 1.962 -3.348 -4.122 0.876 -3.240 -2.981 2.034 -3.496 1.532 0.569 -3.353 -1.037 -1.957 ML 166 164 6 169 6 1 1 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 31 71 u a - - MP 171 170 6 175 4 2 2 56 76 -6.438 -6.645 -0.076 -5.060 -3.408 -3.171 -3.321 0.465 -2.455 -3.948 1.848 -3.084 -3.338 0.902 -3.744 -1.082 2.730 -3.577 -0.151 -2.225 ML 172 170 6 175 4 1 1 56 76 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 4 1 1 56 76 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 6 175 4 0 0 55 75 -4.568 -4.250 -2.265 -0.520 IL 175 175 5 175 4 1 1 58 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - u - - - ML 177 176 6 179 3 1 1 54 73 -5.054 -0.064 -6.242 -0.193 -0.456 -1.001 0.923 D 178 176 6 179 3 0 0 52 72 -5.620 -0.734 -1.403 IL 179 179 3 179 3 1 1 54 74 -2.013 -0.515 -4.252 0.000 0.000 0.000 0.000 [ MATR 40 ] - 70 - C - - MR 180 179 3 182 3 1 1 52 72 -7.924 -0.025 -6.242 -0.709 1.163 -1.472 -0.344 D 181 179 3 182 3 0 0 51 70 -6.390 -1.568 -0.620 IR 182 182 3 182 3 1 1 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 69 - U - - MR 183 182 3 185 3 1 1 51 71 -7.924 -0.025 -6.242 -0.686 -0.839 -1.361 1.281 D 184 182 3 185 3 0 0 50 69 -6.390 -1.568 -0.620 IR 185 185 3 185 3 1 1 52 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 68 - U - - MR 186 185 3 188 5 1 1 50 70 -6.696 -0.052 -6.511 -6.723 -7.615 -0.686 -0.839 -1.361 1.281 D 187 185 3 188 5 0 0 49 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 188 188 3 188 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 34 67 g u - - MP 189 188 3 193 6 2 2 49 69 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.104 -2.134 -3.219 1.386 -3.507 -4.291 0.779 -3.322 -3.049 2.037 -3.552 2.190 0.415 -3.574 -1.157 -2.052 ML 190 188 3 193 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 3 193 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 3 193 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 35 66 C G - - MP 195 194 6 199 6 2 2 47 67 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.503 -3.369 -3.355 0.285 -2.329 -3.887 3.001 -3.039 -3.394 0.671 -3.752 -1.370 1.277 -3.617 0.320 -2.273 ML 196 194 6 199 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 36 65 c g - - MP 201 200 6 205 6 2 2 45 65 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.302 -3.193 -3.194 0.433 -2.231 -3.761 2.759 -2.918 -3.228 0.795 -3.612 -1.224 1.391 -3.437 0.885 -2.124 ML 202 200 6 205 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 203 200 6 205 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 204 200 6 205 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 205 205 5 205 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 206 206 6 206 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 37 64 g u - - MP 207 206 6 211 6 2 2 43 63 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.104 -2.134 -3.219 1.386 -3.507 -4.291 0.779 -3.322 -3.049 2.037 -3.552 2.190 0.415 -3.574 -1.157 -2.052 ML 208 206 6 211 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 209 206 6 211 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 210 206 6 211 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 211 211 5 211 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 212 212 6 212 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 38 63 g u - - MP 213 212 6 217 6 2 2 41 61 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.104 -2.134 -3.219 1.386 -3.507 -4.291 0.779 -3.322 -3.049 2.037 -3.552 2.190 0.415 -3.574 -1.157 -2.052 ML 214 212 6 217 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 215 212 6 217 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 216 212 6 217 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 217 217 5 217 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 218 218 6 218 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 39 62 C G - - MP 219 218 6 223 6 2 2 39 59 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.700 -3.500 -3.520 0.169 -2.463 -4.037 3.156 -3.178 -3.553 0.595 -3.892 -1.435 1.118 -3.815 -0.161 -2.427 ML 220 218 6 223 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 221 218 6 223 6 1 1 38 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 222 218 6 223 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 223 223 5 223 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 224 224 6 224 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 40 61 G C - - MP 225 224 6 229 4 2 2 37 57 -6.438 -6.645 -0.076 -5.060 -3.855 -2.681 -3.911 0.757 -3.984 -4.310 0.449 -4.059 -3.688 3.321 -4.096 -0.366 0.030 -3.872 -1.550 -2.802 ML 226 224 6 229 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 227 224 6 229 4 1 1 37 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 228 224 6 229 4 0 0 36 56 -4.568 -4.250 -2.265 -0.520 IL 229 229 5 229 4 1 1 39 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 230 230 6 230 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 41 - A - - - ML 231 230 6 233 3 1 1 35 54 -7.498 -0.029 -6.152 1.422 -1.470 -1.190 -0.939 D 232 230 6 233 3 0 0 33 53 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 42 - U - - - ML 234 233 3 236 3 1 1 34 53 -7.498 -0.029 -6.152 -0.251 -0.663 -1.055 1.034 D 235 233 3 236 3 0 0 32 52 -6.174 -1.687 -0.566 IL 236 236 3 236 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 43 - A - - - ML 237 236 3 239 3 1 1 33 52 -7.498 -0.029 -6.152 1.422 -1.470 -1.190 -0.939 D 238 236 3 239 3 0 0 31 51 -6.174 -1.687 -0.566 IL 239 239 3 239 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 44 - A - - - ML 240 239 3 242 3 1 1 32 51 -7.498 -0.029 -6.152 1.422 -1.470 -1.190 -0.939 D 241 239 3 242 3 0 0 30 49 -6.174 -1.687 -0.566 IL 242 242 3 242 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 45 - U - - - ML 243 242 3 245 3 1 1 30 49 -7.498 -0.029 -6.152 -0.686 -0.839 -1.361 1.281 D 244 242 3 245 3 0 0 29 48 -6.174 -1.687 -0.566 IL 245 245 3 245 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 46 - U - - - ML 246 245 3 248 3 1 1 29 48 -7.498 -0.029 -6.152 -0.686 -0.839 -1.361 1.281 D 247 245 3 248 3 0 0 28 47 -6.174 -1.687 -0.566 IL 248 248 3 248 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 47 - A - - - ML 249 248 3 251 3 1 1 28 47 -7.498 -0.029 -6.152 1.422 -1.470 -1.190 -0.939 D 250 248 3 251 3 0 0 27 46 -6.174 -1.687 -0.566 IL 251 251 3 251 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 48 - A - - - ML 252 251 3 254 5 1 1 27 46 -6.696 -0.052 -6.511 -6.723 -7.615 1.422 -1.470 -1.190 -0.939 D 253 251 3 254 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 254 254 3 254 5 1 1 27 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 49 60 u a - - MP 255 254 3 259 6 2 2 26 45 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.408 -3.171 -3.321 0.465 -2.455 -3.948 1.848 -3.084 -3.338 0.902 -3.744 -1.082 2.730 -3.577 -0.151 -2.225 ML 256 254 3 259 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 257 254 3 259 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 258 254 3 259 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 259 259 5 259 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 260 260 6 260 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 50 59 G C - - MP 261 260 6 265 6 2 2 24 43 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.855 -2.681 -3.911 0.757 -3.984 -4.310 0.449 -4.059 -3.688 3.321 -4.096 -0.366 0.030 -3.872 -1.550 -2.802 ML 262 260 6 265 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 263 260 6 265 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 264 260 6 265 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 265 265 5 265 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 266 266 6 266 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 60 ] 51 58 a u - - MP 267 266 6 271 6 2 2 22 41 -8.934 -8.873 -0.024 -7.649 -7.929 -8.324 -3.181 -2.386 -3.230 2.669 -3.256 -4.293 1.017 -3.294 -3.156 1.770 -3.669 0.016 0.587 -3.585 -0.934 -2.108 ML 268 266 6 271 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 269 266 6 271 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 270 266 6 271 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 271 271 5 271 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 272 272 6 272 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 52 57 C G - - MP 273 272 6 277 4 2 2 20 39 -6.438 -6.645 -0.076 -5.060 -3.700 -3.500 -3.520 0.169 -2.463 -4.037 3.156 -3.178 -3.553 0.595 -3.892 -1.435 1.118 -3.815 -0.161 -2.427 ML 274 272 6 277 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 275 272 6 277 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 276 272 6 277 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 277 277 5 277 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 278 278 6 278 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 53 - G - - - ML 279 278 6 281 3 1 1 17 35 -7.498 -0.029 -6.152 -0.372 -1.241 1.068 -0.499 D 280 278 6 281 3 0 0 16 35 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 54 - u - - - ML 282 281 3 284 3 1 1 15 34 -7.498 -0.029 -6.152 -0.152 -0.659 -0.025 0.569 D 283 281 3 284 3 0 0 15 33 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 55 - U - - - ML 285 284 3 287 3 1 1 13 32 -7.498 -0.029 -6.152 -0.686 -0.839 -1.361 1.281 D 286 284 3 287 3 0 0 13 32 -6.174 -1.687 -0.566 IL 287 287 3 287 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 56 - G - - - ML 288 287 3 290 2 1 1 1 1 * 0.000 -0.614 -1.651 1.346 -1.041 D 289 287 3 290 2 0 0 0 0 * 0.000 IL 290 290 3 290 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 66 ] - - - - - - E 291 290 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-288 ACC RF00787 DESC mir-288 microRNA precursor family LENG 96 MAXL 195 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 11 05:42:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00787/CM NSEQ 12 EFFN 1.661133 CKSUM 3953006746 STATS LOCAL MSV -9.0764 0.71871 STATS LOCAL VITERBI -10.2688 0.71871 STATS LOCAL FORWARD -3.0674 0.71871 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.47222 1.45275 1.31238 1.31871 1.38629 1.38629 1.38629 1.38629 0.43383 1.38937 2.27548 0.18789 1.76438 0.00000 * 1 1.87495 2.46534 0.40686 2.34425 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.05515 3.61829 3.61829 1.46634 0.26236 1.81708 0.17733 2 2.24467 2.67225 0.28485 2.61982 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.05515 3.61829 3.61829 1.46634 0.26236 1.81708 0.17733 3 1.83522 1.07059 1.71698 1.14568 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.05515 3.61829 3.61829 1.46634 0.26236 0.39304 1.12393 4 2.83116 0.34747 2.56595 1.84685 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 5 0.62983 2.31925 1.49599 1.93141 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 6 1.88608 1.35996 1.69004 0.89857 7 u - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 7 2.35852 2.86385 0.23797 2.81060 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 8 2.60411 1.64135 2.30799 0.45752 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 9 2.84504 0.34522 2.57167 1.84898 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 10 1.73148 2.08293 0.57673 1.99012 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 11 2.60403 1.64135 2.30797 0.45753 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 12 0.22953 2.88289 2.64258 2.55175 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 13 0.22953 2.88288 2.64258 2.55175 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 14 2.28238 2.30375 2.78347 0.30618 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 15 2.28238 2.30375 2.78347 0.30618 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 16 0.52067 2.36758 1.54499 2.31409 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 17 1.77359 2.53328 0.41141 2.42855 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 18 2.41723 0.31334 2.98150 2.04708 19 C - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 19 1.49514 1.85462 0.91174 1.52581 20 g - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 20 1.77366 2.53340 0.41136 2.42871 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 21 1.39296 1.58652 1.24810 1.34717 22 g - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 22 1.77389 2.53375 0.41119 2.42922 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 23 2.00005 0.61102 2.55705 1.40919 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 24 0.41314 2.39782 2.32477 1.89906 25 A - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 25 1.92292 0.57410 2.22157 1.70281 26 C - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 26 0.79017 2.28379 1.23159 1.88053 27 a - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 27 1.30018 2.42987 0.62051 2.28476 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 28 2.48044 0.38137 2.37338 1.96466 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 29 1.15317 2.37557 0.72568 2.23112 30 g - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 30 2.60483 1.64134 2.30825 0.45740 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 31 1.66890 1.80068 2.28756 0.60726 32 U - - - 1.38629 1.38629 1.38629 1.38629 0.09422 2.73061 3.69952 0.63913 0.75025 1.09861 0.40547 32 1.77249 2.53156 0.41223 2.42607 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 33 2.61111 0.50077 2.34664 1.49257 35 C - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 34 2.46321 0.69192 2.20674 1.19018 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 35 1.77378 2.53357 0.41127 2.42896 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 36 1.77373 2.53350 0.41131 2.42885 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 37 2.84463 0.34529 2.57150 1.84892 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 38 2.35928 2.86460 0.23775 2.81169 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 39 0.22953 2.88288 2.64258 2.55175 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 40 1.75157 2.03738 2.38533 0.50406 42 U - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 41 0.22953 2.88289 2.64258 2.55175 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 42 0.22953 2.88289 2.64258 2.55175 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 43 2.28238 2.30375 2.78347 0.30618 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 44 2.28238 2.30375 2.78347 0.30618 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 45 0.22953 2.88289 2.64258 2.55175 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 46 0.22953 2.88289 2.64258 2.55175 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 47 2.60476 1.64134 2.30823 0.45741 49 U - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 48 2.36040 2.86569 0.23741 2.81328 50 G - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 49 0.52011 2.36885 1.54503 2.31618 51 A - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 50 2.84563 0.34513 2.57191 1.84907 52 C - - < 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 51 1.94700 2.58868 0.43610 1.99786 53 G - - _ 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 52 1.61494 1.96589 1.36002 0.90532 54 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 53 2.28238 2.30375 2.78347 0.30618 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 54 2.32497 3.14505 0.23166 2.71908 56 G - - _ 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 55 2.12209 2.73723 0.29940 2.60091 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 56 2.54506 1.79953 2.18372 0.44078 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 57 3.02279 0.27882 2.69227 2.06410 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 58 0.52208 2.48194 1.47805 2.35335 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 59 3.02803 0.27813 2.69435 2.06512 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 60 2.12258 2.73779 0.29920 2.60166 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 61 2.64839 1.61404 2.33985 0.45600 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 62 2.64930 1.61403 2.34018 0.45586 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 63 1.78465 2.36909 0.46030 2.23042 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 64 1.89481 2.50879 0.39236 2.37704 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 65 2.65339 1.61399 2.34164 0.45519 67 U - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 66 2.28238 2.30375 2.78347 0.30618 68 U - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 67 2.28238 2.30375 2.78347 0.30618 69 U - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 68 2.41723 0.31334 2.98150 2.04708 70 C - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 69 0.52076 2.48568 1.47793 2.35858 71 A - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 70 2.45340 1.49547 2.18184 0.54987 72 U - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 71 2.20826 2.53880 0.32395 2.43200 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 72 2.50976 1.51964 2.23789 0.52216 74 U - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 73 2.41723 0.31334 2.98150 2.04708 75 C - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 74 2.32497 3.14505 0.23166 2.71908 76 G - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 75 0.22953 2.88289 2.64258 2.55175 77 A - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 76 2.64966 1.61403 2.34031 0.45580 78 U - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 77 1.70640 1.53243 1.44594 1.00254 79 u - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 78 2.65230 1.61400 2.34125 0.45537 80 U - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 79 1.91223 0.84339 1.65616 1.46477 81 c - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 80 0.22953 2.88289 2.64258 2.55175 82 A - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 81 2.65215 1.61400 2.34120 0.45539 83 U - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 82 2.55214 1.79989 2.18586 0.43946 84 U - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 83 2.28238 2.30375 2.78347 0.30618 85 U - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 84 2.41723 0.31334 2.98150 2.04708 86 C - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 85 0.52101 2.48497 1.47795 2.35759 87 A - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 86 2.20980 1.46097 1.75261 0.72372 88 u - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 87 2.12329 2.73861 0.29890 2.60275 89 G - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 88 0.52067 2.48595 1.47793 2.35896 90 A - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 89 3.03517 0.27719 2.69717 2.06651 91 C - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 90 0.93535 1.92551 1.27364 1.70410 92 a - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 91 2.41723 0.31334 2.98150 2.04708 93 C - - - 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 92 2.10502 2.71753 0.30658 2.57488 94 G - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 93 1.60295 1.88594 0.74857 1.74889 95 g - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 94 2.76531 0.34273 2.49353 1.93381 96 C - - > 1.38629 1.38629 1.38629 1.38629 0.05074 3.69952 3.69952 1.46634 0.26236 1.09861 0.40547 95 2.49884 0.45405 2.28234 1.71080 97 C - - > 1.38629 1.38629 1.38629 1.38629 0.13044 3.69952 2.32734 1.46634 0.26236 1.09861 0.40547 96 2.15875 2.94906 0.28518 2.52241 98 G - - : 1.38629 1.38629 1.38629 1.38629 0.02779 3.59687 * 1.46634 0.26236 0.00000 * //