INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-486 ACC RF00784 DESC microRNA mir-486 STATES 208 NODES 53 CLEN 68 W 84 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 18:21:05 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00784/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 16 EFFN 2.003906 CKSUM 941562636 NULL 0.000 0.000 0.000 0.000 GA 69.00 TC 69.50 NC 68.40 EFP7GF -9.0845 0.71913 ECMLC 0.66649 -5.99068 2.37416 1600000 316531 0.003791 ECMGC 0.45173 -14.77622 -2.50581 1600000 102165 0.003915 ECMLI 0.65832 -4.43245 3.38679 1600000 206412 0.005814 ECMGI 0.47957 -10.35163 0.47142 1600000 71817 0.005570 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 84 103 -6.978 -7.185 -0.215 -3.013 IL 1 1 2 1 4 1 17 88 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 16 84 103 -7.847 -0.022 -6.501 -1.329 -2.508 1.659 -1.893 D 4 2 3 5 3 0 12 82 102 -7.104 -2.617 -0.269 IL 5 5 3 5 3 1 16 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - c - - - ML 6 5 3 8 3 1 15 83 102 -7.847 -0.022 -6.501 -0.246 0.227 -0.003 -0.017 D 7 5 3 8 3 0 12 81 101 -7.104 -2.617 -0.269 IL 8 8 3 8 3 1 15 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 1 14 82 101 -7.847 -0.022 -6.501 0.968 -1.299 0.047 -0.726 D 10 8 3 11 3 0 11 80 100 -7.104 -0.648 -1.496 IL 11 11 3 11 3 1 14 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 13 80 100 -7.992 -0.020 -6.646 -1.538 -1.525 -2.274 1.633 D 13 11 3 14 3 0 10 79 99 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 13 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 12 79 99 -7.992 -0.020 -6.646 -1.810 1.642 -2.636 -1.210 D 16 14 3 17 3 0 9 78 98 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 12 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 11 78 98 -7.992 -0.020 -6.646 -1.810 1.642 -2.636 -1.210 D 19 17 3 20 3 0 8 77 97 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 11 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 10 77 97 -8.381 -0.246 -2.699 -1.538 -1.525 -2.274 1.633 D 22 20 3 23 3 0 8 76 96 -5.620 -0.734 -1.403 IL 23 23 3 23 3 1 11 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 69 - C - - MR 24 23 3 26 3 1 11 76 96 -8.156 -0.021 -6.474 -1.238 1.455 -2.039 -0.756 D 25 23 3 26 3 0 6 75 95 -7.544 -1.012 -1.004 IR 26 26 3 26 3 1 10 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 68 - a - - MR 27 26 3 29 3 1 10 75 95 -8.301 -0.019 -6.618 0.250 -0.309 0.228 -0.264 D 28 26 3 29 3 0 5 74 94 -6.935 -0.874 -1.165 IR 29 29 3 29 3 1 9 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 67 - u - - MR 30 29 3 32 3 1 10 74 94 -8.381 -0.018 -6.699 -0.762 0.092 -1.523 0.998 D 31 29 3 32 3 0 4 73 92 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 8 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 66 - A - - MR 33 32 3 35 3 1 9 73 93 -8.381 -0.018 -6.699 1.370 -1.636 -0.656 -1.122 D 34 32 3 35 3 0 3 72 91 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 8 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 65 - G - - MR 36 35 3 38 3 1 8 72 92 -8.381 -0.018 -6.699 -1.641 -2.870 1.737 -2.257 D 37 35 3 38 3 0 2 71 90 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 7 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 64 - G - - MR 39 38 3 41 3 1 8 71 91 -8.381 -0.018 -6.699 -0.405 -1.277 1.209 -0.942 D 40 38 3 41 3 0 2 70 89 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 6 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 63 - A - - MR 42 41 3 44 5 1 8 70 90 -7.118 -0.038 -6.933 -7.146 -8.037 1.308 -0.858 -1.298 -0.821 D 43 41 3 44 5 0 1 69 89 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 5 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 8 62 G C - - MP 45 44 3 49 6 2 9 69 89 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.801 -3.122 -4.906 0.161 -5.316 -4.717 -0.666 -5.152 -4.366 3.652 -4.699 -0.823 -1.049 -4.506 -2.706 -3.781 ML 46 44 3 49 6 1 3 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 3 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 0 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 4 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 4 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 9 61 U A - - MP 51 50 6 55 6 2 8 67 87 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.260 -4.087 -4.090 -0.376 -3.017 -4.648 1.312 -3.718 -4.094 -0.133 -4.464 -1.983 3.360 -4.409 -0.692 -2.912 ML 52 50 6 55 6 1 3 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 2 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 4 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 4 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 10 60 A U - - MP 57 56 6 61 6 2 8 65 85 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -3.845 -2.863 -3.860 3.365 -4.225 -5.292 0.079 -3.898 -3.749 1.020 -4.299 -0.330 -0.338 -4.471 -1.862 -2.690 ML 58 56 6 61 6 1 2 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 2 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 3 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 4 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 59 C G - - MP 63 62 6 67 6 2 8 63 83 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.616 -4.527 -4.294 -0.753 -2.998 -4.697 3.571 -3.814 -4.346 -0.522 -4.600 -2.475 0.510 -4.680 -0.706 -3.183 ML 64 62 6 67 6 1 2 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 2 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 3 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 3 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 58 U A - - MP 69 68 6 73 6 2 7 61 81 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.260 -4.087 -4.090 -0.376 -3.017 -4.648 1.312 -3.718 -4.094 -0.133 -4.464 -1.983 3.360 -4.409 -0.692 -2.912 ML 70 68 6 73 6 1 2 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 2 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 3 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 3 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 57 G C - - MP 75 74 6 79 6 2 7 59 79 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.801 -3.122 -4.906 0.161 -5.316 -4.717 -0.666 -5.152 -4.366 3.652 -4.699 -0.823 -1.049 -4.506 -2.706 -3.781 ML 76 74 6 79 6 1 2 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 2 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 2 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 3 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 14 56 A U - - MP 81 80 6 85 6 2 7 57 77 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -3.845 -2.863 -3.860 3.365 -4.225 -5.292 0.079 -3.898 -3.749 1.020 -4.299 -0.330 -0.338 -4.471 -1.862 -2.690 ML 82 80 6 85 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 2 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 2 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 55 G C - - MP 87 86 6 91 6 2 6 55 75 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.801 -3.122 -4.906 0.161 -5.316 -4.717 -0.666 -5.152 -4.366 3.652 -4.699 -0.823 -1.049 -4.506 -2.706 -3.781 ML 88 86 6 91 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 2 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 2 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 54 C G - - MP 93 92 6 97 6 2 6 53 73 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.616 -4.527 -4.294 -0.753 -2.998 -4.697 3.571 -3.814 -4.346 -0.522 -4.600 -2.475 0.510 -4.680 -0.706 -3.183 ML 94 92 6 97 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 2 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 2 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 53 U A - - MP 99 98 6 103 6 2 4 51 71 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.260 -4.087 -4.090 -0.376 -3.017 -4.648 1.312 -3.718 -4.094 -0.133 -4.464 -1.983 3.360 -4.409 -0.692 -2.912 ML 100 98 6 103 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 2 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 52 G C - - MP 105 104 6 109 4 2 3 49 69 -6.978 -7.185 -0.052 -5.599 -4.801 -3.122 -4.906 0.161 -5.316 -4.717 -0.666 -5.152 -4.366 3.652 -4.699 -0.823 -1.049 -4.506 -2.706 -3.781 ML 106 104 6 109 4 1 1 50 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 49 69 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 48 68 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 51 71 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - C - - - ML 111 110 6 113 3 1 1 47 66 -8.381 -0.018 -6.699 -1.810 1.642 -2.636 -1.210 D 112 110 6 113 3 0 0 46 65 -5.620 -0.734 -1.403 IL 113 113 3 113 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 51 - G - - MR 114 113 3 116 5 1 1 46 65 -7.118 -0.038 -6.933 -7.146 -8.037 -0.571 -1.149 1.155 -0.623 D 115 113 3 116 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 20 50 C G - - MP 117 116 3 121 6 2 2 45 64 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.616 -4.527 -4.294 -0.753 -2.998 -4.697 3.571 -3.814 -4.346 -0.522 -4.600 -2.475 0.510 -4.680 -0.706 -3.183 ML 118 116 3 121 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 21 49 C G - - MP 123 122 6 127 6 2 2 43 62 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.616 -4.527 -4.294 -0.753 -2.998 -4.697 3.571 -3.814 -4.346 -0.522 -4.600 -2.475 0.510 -4.680 -0.706 -3.183 ML 124 122 6 127 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 42 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 48 C G - - MP 129 128 6 133 6 2 2 41 60 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.616 -4.527 -4.294 -0.753 -2.998 -4.697 3.571 -3.814 -4.346 -0.522 -4.600 -2.475 0.510 -4.680 -0.706 -3.183 ML 130 128 6 133 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 39 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 40 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 23 47 G C - - MP 135 134 6 139 6 2 2 39 58 -9.119 -9.058 -0.021 -7.835 -8.115 -8.510 -4.801 -3.122 -4.906 0.161 -5.316 -4.717 -0.666 -5.152 -4.366 3.652 -4.699 -0.823 -1.049 -4.506 -2.706 -3.781 ML 136 134 6 139 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 37 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 38 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 24 46 A U - - MP 141 140 6 145 6 2 2 37 56 -9.119 -3.553 -0.148 -7.835 -8.115 -8.510 -3.845 -2.863 -3.860 3.365 -4.225 -5.292 0.079 -3.898 -3.749 1.020 -4.299 -0.330 -0.338 -4.471 -1.862 -2.690 ML 142 140 6 145 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 36 55 -2.994 -0.311 -6.505 -4.673 -5.779 0.000 0.000 0.000 0.000 [ MATP 33 ] 25 44 G C - - MP 147 146 6 151 4 2 2 35 54 -6.978 -7.185 -0.417 -2.081 -4.801 -3.122 -4.906 0.161 -5.316 -4.717 -0.666 -5.152 -4.366 3.652 -4.699 -0.823 -1.049 -4.506 -2.706 -3.781 ML 148 146 6 151 4 1 1 35 55 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 35 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 34 53 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 37 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 26 - G - - - ML 153 152 6 155 3 1 1 32 51 -7.670 -0.025 -6.324 -0.956 -2.066 1.526 -1.450 D 154 152 6 155 3 0 0 31 50 -7.705 -0.393 -2.097 IL 155 155 3 155 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 27 - C - - - ML 156 155 3 158 3 1 1 31 50 -7.992 -0.020 -6.646 -1.141 1.288 -1.965 -0.238 D 157 155 3 158 3 0 0 30 49 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - c - - - ML 159 158 3 161 3 1 1 30 49 -7.992 -0.020 -6.646 -0.809 0.849 -1.612 0.379 D 160 158 3 161 3 0 0 29 48 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - c - - - ML 162 161 3 164 3 1 1 29 48 -7.992 -0.020 -6.646 -0.402 0.508 0.020 -0.310 D 163 161 3 164 3 0 0 28 47 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - u - - - ML 165 164 3 167 3 1 1 28 47 -7.992 -0.121 -3.702 0.026 -0.796 -0.452 0.744 D 166 164 3 167 3 0 0 27 46 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - u - - - ML 168 167 3 170 3 1 1 27 46 -7.893 -0.022 -6.547 -0.336 -0.871 0.163 0.624 D 169 167 3 170 3 0 0 26 45 -6.879 -0.793 -1.271 IL 170 170 3 170 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - C - - - ML 171 170 3 173 3 1 1 26 45 -7.992 -0.020 -6.646 -1.810 1.642 -2.636 -1.210 D 172 170 3 173 3 0 0 25 44 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - A - - - ML 174 173 3 176 3 1 1 25 43 -7.992 -0.020 -6.646 1.261 -1.537 -0.395 -1.004 D 175 173 3 176 3 0 0 24 43 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - u - - - ML 177 176 3 179 3 1 1 23 42 -7.992 -0.020 -6.646 -0.411 0.377 -0.770 0.446 D 178 176 3 179 3 0 0 22 41 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 35 - u - - - ML 180 179 3 182 3 1 1 22 41 -7.992 -0.020 -6.646 0.193 -0.345 -0.322 0.344 D 181 179 3 182 3 0 0 21 40 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 36 - g - - - ML 183 182 3 185 3 1 1 21 40 -7.992 -0.020 -6.646 0.112 -0.483 0.528 -0.394 D 184 182 3 185 3 0 0 20 39 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 37 - U - - - ML 186 185 3 188 3 1 1 20 39 -7.992 -0.020 -6.646 -1.538 -1.525 -2.274 1.633 D 187 185 3 188 3 0 0 19 38 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 38 - G - - - ML 189 188 3 191 3 1 1 19 37 -7.992 -0.020 -6.646 -1.641 -2.870 1.737 -2.257 D 190 188 3 191 3 0 0 18 37 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 39 - c - - - ML 192 191 3 194 3 1 1 17 36 -7.992 -0.020 -6.646 0.385 0.538 -1.198 -0.309 D 193 191 3 194 3 0 0 17 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 40 - a - - - ML 195 194 3 197 3 1 1 16 35 -7.992 -0.020 -6.646 0.366 0.272 -1.077 0.042 D 196 194 3 197 3 0 0 16 34 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 41 - c - - - ML 198 197 3 200 3 1 1 15 33 -7.992 -0.020 -6.646 -0.374 0.507 -0.198 -0.095 D 199 197 3 200 3 0 0 15 33 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 42 - A - - - ML 201 200 3 203 3 1 1 13 31 -7.992 -0.020 -6.646 1.036 -1.429 0.041 -0.864 D 202 200 3 203 3 0 0 13 32 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 43 - G - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 -0.155 -1.810 1.255 -1.219 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-486 ACC RF00784 DESC microRNA mir-486 LENG 68 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 18:21:05 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00784/CM NSEQ 16 EFFN 2.699219 CKSUM 941562636 STATS LOCAL MSV -8.7679 0.71913 STATS LOCAL VITERBI -9.0603 0.71913 STATS LOCAL FORWARD -3.3002 0.71913 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.61459 1.23217 1.23091 1.52629 1.38629 1.38629 1.38629 1.38629 0.15869 3.98739 2.05424 1.46634 0.26236 0.00000 * 1 2.62820 3.49594 0.16121 3.07143 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04256 3.87126 3.87126 1.46634 0.26236 2.18732 0.11903 2 1.62862 1.17859 1.34621 1.44450 2 c - - : 1.38629 1.38629 1.38629 1.38629 0.04256 3.87126 3.87126 1.46634 0.26236 2.18732 0.11903 3 0.66546 2.41862 1.32672 2.02817 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.04256 3.87126 3.87126 1.46634 0.26236 0.25416 1.49417 4 2.76653 2.70412 3.28978 0.18281 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 5 3.04713 0.16509 3.62256 2.55134 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 6 3.04713 0.16509 3.62256 2.55134 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 7 2.76653 2.70412 3.28978 0.18281 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 8 2.68939 3.40311 0.14692 3.33966 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 9 3.16019 2.04773 2.93171 0.25457 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 10 0.27967 2.97809 1.97977 2.90087 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 11 3.36572 0.20247 3.16113 2.24077 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 12 3.16026 2.04774 2.93174 0.25456 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 13 2.69101 3.40517 0.14660 3.34248 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 14 0.27987 2.97711 1.97957 2.89950 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 15 2.69022 3.40416 0.14676 3.34110 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 16 3.36147 0.20286 3.15900 2.24000 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 17 3.15706 2.04751 2.93023 0.25488 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 18 2.68939 3.40311 0.14692 3.33967 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 19 3.04713 0.16509 3.62256 2.55134 19 C - - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 20 3.36540 0.20250 3.16097 2.24071 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 21 3.36777 0.20229 3.16215 2.24114 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 22 3.36782 0.20228 3.16218 2.24115 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 23 2.69236 3.40688 0.14633 3.34484 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 24 0.27968 2.97802 1.97976 2.90077 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 25 2.68677 3.39979 0.14745 3.33511 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.30941 3.98739 1.39604 1.46634 0.26236 1.09861 0.40547 26 2.32117 3.14059 0.23275 2.71461 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04931 3.72729 3.72729 1.46634 0.26236 0.13962 2.03782 27 2.41279 0.40219 3.00407 1.65028 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 28 2.10656 0.71681 2.68472 1.13384 28 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 29 1.78125 0.95230 1.33162 1.70555 29 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 30 1.38539 2.01140 1.70388 0.83472 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.12042 3.98739 2.35487 1.46634 0.26236 1.09861 0.40547 31 1.69961 2.07464 1.23265 0.91598 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04099 3.90796 3.90796 1.46634 0.26236 0.32993 1.26931 32 3.04713 0.16509 3.62256 2.55134 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 33 0.45285 2.62396 1.66920 2.27039 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 34 1.75591 1.06597 1.95294 1.07587 34 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 35 1.25504 1.62962 1.60163 1.14770 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 36 1.34294 1.72786 0.94591 1.75485 36 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 37 2.76653 2.70412 3.28978 0.18281 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 38 2.86876 3.76862 0.12237 3.34311 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 39 1.10814 0.93938 2.34453 1.69792 39 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 40 1.12176 1.14597 2.22307 1.39391 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 41 1.74238 0.96268 1.50156 1.51300 41 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 42 0.61518 2.53658 1.33023 2.15499 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 43 1.55733 2.84413 0.43903 2.44813 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 44 3.49641 0.17746 3.22512 2.38004 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.30941 1.39604 3.98739 0.14364 2.01142 1.09861 0.40547 45 3.12554 2.29331 2.78835 0.23113 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 46 3.54259 0.17386 3.24645 2.38889 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 47 2.52218 3.33210 0.17395 3.13132 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 48 2.52385 3.33450 0.17354 3.13415 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 49 2.52618 3.33788 0.17297 3.13810 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 50 1.92350 2.27553 0.49810 1.94156 51 G - - - 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 51 3.53011 0.17481 3.24074 2.38653 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 52 0.28901 3.11691 1.88421 2.90497 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 53 2.51773 3.32568 0.17504 3.12381 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 54 3.53295 0.17459 3.24204 2.38707 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 55 3.12237 2.29286 2.78707 0.23147 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 56 3.53618 0.17435 3.24352 2.38768 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 57 0.28858 3.11942 1.88454 2.90790 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 58 2.52059 3.32980 0.17434 3.12863 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 59 3.12920 2.29383 2.78982 0.23075 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 60 0.28790 3.12340 1.88507 2.91254 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 61 3.55804 0.17269 3.25347 2.39178 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 62 0.41215 2.02937 2.44605 2.12258 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 63 1.78005 2.36846 0.46412 2.21588 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 64 2.86876 3.76862 0.12237 3.34311 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 65 0.37603 2.70409 1.87801 2.36883 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.03780 3.98739 3.98739 1.46634 0.26236 1.09861 0.40547 66 2.06230 1.29636 2.60163 0.64405 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.10880 3.98739 2.47046 1.46634 0.26236 1.09861 0.40547 67 1.22610 1.59067 1.17526 1.63971 68 g - - : 1.38629 1.38629 1.38629 1.38629 0.17164 3.91911 1.98153 1.46634 0.26236 1.88072 0.16544 68 2.57164 0.26635 3.14199 2.16963 69 C - - : 1.38629 1.38629 1.38629 1.38629 0.02330 3.77078 * 1.46634 0.26236 0.00000 * //