# STOCKHOLM 1.0
#=GF ID mir-541
#=GF AC RF00777
#=GF DE mir-541 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 44.0
#=GF NC 43.9
#=GF TC 44.0
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000213;
#=GF DR URL; http://www.mirbase.org;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF DR GO; 0010629; negative regulation of gene expression;
#=GF DR GO; 0003323; type B pancreatic cell development;
#=GF DR GO; 0060291; long-term synaptic potentiation;
#=GF RN [1]
#=GF RM 16274478
#=GF RT Identification of clustered microRNAs using an ab initio prediction
#=GF RT method.
#=GF RA Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T,
#=GF RA van Nimwegen E, Zavolan M
#=GF RL BMC Bioinformatics. 2005;6:267.
#=GF RN [2]
#=GF RM 16973894
#=GF RT Mouse microRNA profiles determined with a new and sensitive cloning
#=GF RT method.
#=GF RA Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP,
#=GF RA Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk
#=GF RA RH, Cuppen E, Mano H
#=GF RL Nucleic Acids Res. 2006;34:e115.
#=GF RN [3]
#=GF RM 17604727
#=GF RT A mammalian microRNA expression atlas based on small RNA library
#=GF RT sequencing.
#=GF RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
#=GF RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
#=GF RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
#=GF RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
#=GF RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
#=GF RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
#=GF RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
#=GF RA JJ, Sander C, Zavolan M, Tuschl T
#=GF RL Cell. 2007;129:1401-1414.
#=GF RN [4]
#=GF RM 20215419
#=GF RT MicroRNA transcriptome in the newborn mouse ovaries determined by massive
#=GF RT parallel sequencing.
#=GF RA Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A,
#=GF RA Marra MA, Rajkovic A
#=GF RL Mol Hum Reprod. 2010;16:463-471.
#=GF RN [5]
#=GF RM 20413612
#=GF RT Mammalian microRNAs: experimental evaluation of novel and previously
#=GF RT annotated genes.
#=GF RA Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston
#=GF RA WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel
#=GF RA DP
#=GF RL Genes Dev. 2010;24:992-1009.
#=GF RN [6]
#=GF RM 20944086
#=GF RT Assessing the effect of the CLPG mutation on the microRNA catalog of
#=GF RT skeletal muscle using high-throughput sequencing.
#=GF RA Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D
#=GF RL Genome Res. 2010;20:1651-1662.
#=GF RN [7]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF CC This family represents the microRNA (miRNA) precursor mir-541 imported
#=GF CC from miRBase.
#=GF WK Mir-541_microRNA_precursor_family
#=GF SQ 8

URS000075BC5F_9606/1-84  ACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUCACAGAAUGGGUGGUGGGCACAGAAUCUGGACUCUGCUUGUG
URS0000A90B72_9600/1-84  ACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUUACAGAAUGGGUGGUGGGCACAGAAUCCGGACUCUGCUUGUG
URS000075A072_9544/1-84  ACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUGCAUAGAAUGGGUGGUGGGCACAGAAUCCGGACUCUGCUUGUG
URS000075E93D_9913/1-84  ACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUCAAAAAAUGGGUGGUGGGCACAGAAUCCGGCCUCUGCUUGUG
URS000075E94A_9940/15-97 ACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUCGAAACAUGGGUGGUGGGCACAGAAUCCGGCCUCUGCU-GUG
URS000075B3E9_9796/1-84  ACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAGAGUUCGCAAAAUGGGUGGUGGGCACAGAAUCCAGUCUCUGCUUGUG
URS0000626C99_10090/5-88 AAAUCAGAGAAGGGAUUCUGAUGUUGGUCACACUCCAAGAGUUUUAAAAUGAGUGGCGAACACAGAAUCCAUACUCUGCUUAUG
URS00006275E0_10116/5-88 AAAUCAGAGAAGGGAUUCUGAUGUUGGUCACACUCCAAGAAUUUUAAAAUGAGUGGCGAACACAGAAUCCAUACUCUGCUUAUG
#=GC SS_cons             <<<-<<<<<---<<<<<<<<-<<<<-<--<<<<<<_______________>>>>>>>->>>>>>>>>>>>--->>>>>-->>>:
#=GC RF                  acgUCaGgGAAaGGauuCuGcuGccGgUCcCaCcCCAAaguUuauAaAAUGgGuGgcGggCaCaGaauCCggaCuCuGCUcguG
//
