INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-360 ACC RF00774 DESC microRNA mir-360 STATES 190 NODES 46 CLEN 62 W 77 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 09:17:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00774/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.050781 CKSUM 538175945 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 60.60 NC 58.00 EFP7GF -8.7522 0.71928 ECMLC 0.68052 -4.59489 3.63787 1600000 325331 0.003689 ECMGC 0.47808 -12.99511 -0.97343 1600000 125339 0.003191 ECMLI 0.65193 -3.55629 4.67398 1600000 256685 0.004675 ECMGI 0.49250 -8.72144 2.16476 1600000 85217 0.004694 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 97 -6.909 -8.155 -0.078 -4.608 IL 1 1 2 1 4 1 11 79 99 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 62 - A - - MR 3 2 3 5 3 1 14 77 97 -8.397 -0.018 -6.715 1.738 -2.464 -2.086 -2.015 D 4 2 3 5 3 0 7 76 96 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 12 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 61 - C - - MR 6 5 3 8 5 1 13 76 96 -7.133 -0.038 -6.949 -7.161 -8.052 -0.905 1.011 -1.719 0.198 D 7 5 3 8 5 0 6 75 95 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 10 77 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 60 U A - - MP 9 8 3 13 6 2 14 75 95 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.300 -4.128 -4.126 -0.415 -3.045 -4.680 1.286 -3.748 -4.130 -0.177 -4.497 -2.023 3.378 -4.447 -0.718 -2.943 ML 10 8 3 13 6 1 8 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 8 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 4 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 10 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 10 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 59 U A - - MP 15 14 6 19 6 2 14 73 93 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.300 -4.128 -4.126 -0.415 -3.045 -4.680 1.286 -3.748 -4.130 -0.177 -4.497 -2.023 3.378 -4.447 -0.718 -2.943 ML 16 14 6 19 6 1 8 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 7 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 3 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 9 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 9 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 58 G C - - MP 21 20 6 25 6 2 13 71 91 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.835 -3.138 -4.943 0.138 -5.363 -4.730 -0.705 -5.192 -4.388 3.660 -4.718 -0.841 -1.088 -4.529 -2.747 -3.818 ML 22 20 6 25 6 1 7 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 7 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 3 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 9 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 9 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 57 U A - - MP 27 26 6 31 6 2 11 69 89 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.300 -4.128 -4.126 -0.415 -3.045 -4.680 1.286 -3.748 -4.130 -0.177 -4.497 -2.023 3.378 -4.447 -0.718 -2.943 ML 28 26 6 31 6 1 7 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 6 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 3 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 8 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 8 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 56 G C - - MP 33 32 6 37 6 2 10 67 87 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.835 -3.138 -4.943 0.138 -5.363 -4.730 -0.705 -5.192 -4.388 3.660 -4.718 -0.841 -1.088 -4.529 -2.747 -3.818 ML 34 32 6 37 6 1 6 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 5 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 2 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 7 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 7 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 55 A U - - MP 39 38 6 43 4 2 8 65 85 -6.997 -7.204 -0.051 -5.618 -3.876 -2.886 -3.888 3.384 -4.269 -5.339 0.037 -3.925 -3.776 0.987 -4.328 -0.348 -0.380 -4.513 -1.904 -2.717 ML 40 38 6 43 4 1 5 66 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 3 65 85 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 2 64 84 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 7 67 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 6 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - C - - - ML 45 44 6 47 3 1 6 63 83 -8.397 -0.018 -6.715 -1.852 1.653 -2.679 -1.243 D 46 44 6 47 3 0 2 62 81 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 5 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 54 - U - - MR 48 47 3 50 5 1 6 62 82 -7.133 -0.038 -6.949 -7.161 -8.052 -1.570 -1.552 -2.308 1.642 D 49 47 3 50 5 0 1 61 80 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 4 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 53 C G - - MP 51 50 3 55 6 2 6 61 81 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.653 -4.568 -4.325 -0.790 -3.021 -4.723 3.582 -3.841 -4.378 -0.565 -4.628 -2.516 0.483 -4.715 -0.730 -3.214 ML 52 50 3 55 6 1 2 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 2 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 3 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 3 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 52 G C - - MP 57 56 6 61 4 2 4 59 79 -6.997 -7.204 -0.051 -5.618 -4.835 -3.138 -4.943 0.138 -5.363 -4.730 -0.705 -5.192 -4.388 3.660 -4.718 -0.841 -1.088 -4.529 -2.747 -3.818 ML 58 56 6 61 4 1 1 59 79 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 59 79 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 58 78 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 3 61 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 2 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - U - - - ML 63 62 6 65 3 1 3 57 76 -8.010 -0.020 -6.664 -1.570 -1.552 -2.308 1.642 D 64 62 6 65 3 0 0 55 75 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 2 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 11 - U - - - ML 66 65 3 68 3 1 2 56 75 -8.397 -0.018 -6.715 -1.570 -1.552 -2.308 1.642 D 67 65 3 68 3 0 0 54 74 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 1 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 51 - C - - MR 69 68 3 71 3 1 2 55 74 -8.397 -0.018 -6.715 -1.852 1.653 -2.679 -1.243 D 70 68 3 71 3 0 0 53 72 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 55 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 50 - C - - MR 72 71 3 74 5 1 2 54 73 -7.133 -0.038 -6.949 -7.161 -8.052 -1.852 1.653 -2.679 -1.243 D 73 71 3 74 5 0 0 52 72 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 49 G U - - MP 75 74 3 79 6 2 3 53 72 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -3.676 -2.427 -3.847 1.096 -4.613 -5.338 -0.206 -3.863 -3.494 1.276 -4.018 3.144 -0.564 -4.532 -2.149 -2.536 ML 76 74 3 79 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 48 U A - - MP 81 80 6 85 6 2 2 50 70 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.300 -4.128 -4.126 -0.415 -3.045 -4.680 1.286 -3.748 -4.130 -0.177 -4.497 -2.023 3.378 -4.447 -0.718 -2.943 ML 82 80 6 85 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 47 U A - - MP 87 86 6 91 6 2 2 48 68 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.300 -4.128 -4.126 -0.415 -3.045 -4.680 1.286 -3.748 -4.130 -0.177 -4.497 -2.023 3.378 -4.447 -0.718 -2.943 ML 88 86 6 91 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 46 A U - - MP 93 92 6 97 6 2 2 46 66 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -3.876 -2.886 -3.888 3.384 -4.269 -5.339 0.037 -3.925 -3.776 0.987 -4.328 -0.348 -0.380 -4.513 -1.904 -2.717 ML 94 92 6 97 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 45 C G - - MP 99 98 6 103 6 2 2 44 64 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.653 -4.568 -4.325 -0.790 -3.021 -4.723 3.582 -3.841 -4.378 -0.565 -4.628 -2.516 0.483 -4.715 -0.730 -3.214 ML 100 98 6 103 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 44 G C - - MP 105 104 6 109 6 2 2 42 62 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.835 -3.138 -4.943 0.138 -5.363 -4.730 -0.705 -5.192 -4.388 3.660 -4.718 -0.841 -1.088 -4.529 -2.747 -3.818 ML 106 104 6 109 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 43 G C - - MP 111 110 6 115 6 2 2 40 60 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.835 -3.138 -4.943 0.138 -5.363 -4.730 -0.705 -5.192 -4.388 3.660 -4.718 -0.841 -1.088 -4.529 -2.747 -3.818 ML 112 110 6 115 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 40 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 42 U A - - MP 117 116 6 121 6 2 2 38 58 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.300 -4.128 -4.126 -0.415 -3.045 -4.680 1.286 -3.748 -4.130 -0.177 -4.497 -2.023 3.378 -4.447 -0.718 -2.943 ML 118 116 6 121 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 41 C G - - MP 123 122 6 127 6 2 2 36 56 -9.126 -9.066 -0.021 -7.842 -8.122 -8.517 -4.653 -4.568 -4.325 -0.790 -3.021 -4.723 3.582 -3.841 -4.378 -0.565 -4.628 -2.516 0.483 -4.715 -0.730 -3.214 ML 124 122 6 127 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 40 A U - - MP 129 128 6 133 4 2 2 34 54 -6.997 -7.204 -0.051 -5.618 -3.876 -2.886 -3.888 3.384 -4.269 -5.339 0.037 -3.925 -3.776 0.987 -4.328 -0.348 -0.380 -4.513 -1.904 -2.717 ML 130 128 6 133 4 1 1 35 55 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 35 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 33 53 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 36 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 22 - A - - - ML 135 134 6 137 3 1 1 32 51 -8.010 -0.020 -6.664 1.080 -1.098 -1.166 -0.041 D 136 134 6 137 3 0 0 31 50 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - U - - - ML 138 137 3 140 3 1 1 31 50 -8.010 -0.020 -6.664 -1.570 -1.552 -2.308 1.642 D 139 137 3 140 3 0 0 30 49 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 24 - U - - - ML 141 140 3 143 3 1 1 30 49 -8.010 -0.020 -6.664 -1.570 -1.552 -2.308 1.642 D 142 140 3 143 3 0 0 29 48 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - u - - - ML 144 143 3 146 3 1 1 29 48 -8.010 -0.227 -2.820 -0.742 0.468 -1.524 0.741 D 145 143 3 146 3 0 0 28 47 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - a - - - ML 147 146 3 149 3 1 1 28 47 -7.806 -0.262 -2.631 0.946 -1.264 0.052 -0.689 D 148 146 3 149 3 0 0 27 46 -7.348 -0.526 -1.740 IL 149 149 3 149 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - c - - - ML 150 149 3 152 3 1 1 27 46 -7.808 -0.258 -2.648 -0.641 0.740 -1.422 0.395 D 151 149 3 152 3 0 0 25 44 -7.340 -2.853 -0.225 IL 152 152 3 152 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - A - - - ML 153 152 3 155 3 1 1 26 45 -7.577 -0.027 -6.231 1.488 -1.615 -1.322 -1.093 D 154 152 3 155 3 0 0 25 43 -7.970 -0.319 -2.362 IL 155 155 3 155 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - a - - - ML 156 155 3 158 3 1 1 25 43 -8.010 -0.020 -6.664 0.601 -0.896 -0.208 0.111 D 157 155 3 158 3 0 0 23 42 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - u - - - ML 159 158 3 161 3 1 1 23 42 -8.010 -0.020 -6.664 0.078 -0.138 -1.093 0.648 D 160 158 3 161 3 0 0 22 41 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - c - - - ML 162 161 3 164 3 1 1 22 41 -8.010 -0.020 -6.664 0.081 0.345 -1.129 0.281 D 163 161 3 164 3 0 0 21 40 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - U - - - ML 165 164 3 167 3 1 1 21 40 -8.010 -0.020 -6.664 -0.027 -0.899 -1.271 1.048 D 166 164 3 167 3 0 0 20 39 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - G - - - ML 168 167 3 170 3 1 1 20 39 -8.010 -0.020 -6.664 -1.678 -2.913 1.745 -2.300 D 169 167 3 170 3 0 0 19 38 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - A - - - ML 171 170 3 173 3 1 1 19 37 -8.010 -0.020 -6.664 1.080 -1.098 -1.166 -0.041 D 172 170 3 173 3 0 0 18 37 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 35 - A - - - ML 174 173 3 176 3 1 1 17 36 -8.010 -0.020 -6.664 1.112 -0.436 -1.188 -0.598 D 175 173 3 176 3 0 0 17 36 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 36 - A - - - ML 177 176 3 179 3 1 1 16 35 -8.010 -0.020 -6.664 1.172 -1.494 -0.195 -0.947 D 178 176 3 179 3 0 0 16 34 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 37 - c - - - ML 180 179 3 182 3 1 1 15 33 -8.010 -0.224 -2.835 0.015 0.872 -1.384 -0.365 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - a - - - ML 183 182 3 185 3 1 1 13 32 -7.808 -0.023 -6.462 0.839 -0.877 -0.984 0.216 D 184 182 3 185 3 0 0 12 31 -7.340 -2.853 -0.225 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 39 - A - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 1.642 -2.060 -1.723 -1.573 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-360 ACC RF00774 DESC microRNA mir-360 LENG 62 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 09:17:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00774/CM NSEQ 4 EFFN 2.808594 CKSUM 538175945 STATS LOCAL MSV -8.3917 0.71928 STATS LOCAL VITERBI -8.8892 0.71928 STATS LOCAL FORWARD -3.5894 0.71928 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36112 1.41296 1.55602 1.24053 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 0.00000 * 1 3.21104 2.09170 2.99211 0.24077 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 2 3.21604 2.09209 2.99451 0.24029 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 3 2.72238 3.45272 0.14051 3.38995 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 4 3.21785 2.09223 2.99538 0.24012 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 5 2.72221 3.45251 0.14055 3.38965 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 6 0.26402 3.03812 2.02356 2.95773 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 7 3.10472 0.15605 3.67913 2.59824 7 C - - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 8 3.41693 0.19249 3.21743 2.28058 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 9 2.72427 3.45516 0.14015 3.39329 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 10 2.81207 2.74209 3.33683 0.17443 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 11 2.81207 2.74209 3.33683 0.17443 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 12 2.02007 3.11431 0.25943 2.96714 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 13 3.22168 2.09253 2.99721 0.23977 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 14 3.22122 2.09249 2.99699 0.23981 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 15 0.26374 3.03959 2.02389 2.95977 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 16 3.41614 0.19256 3.21703 2.28044 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 17 2.72253 3.45292 0.14048 3.39022 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 18 2.72200 3.45223 0.14059 3.38927 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 19 3.21618 2.09210 2.99458 0.24028 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 20 3.41167 0.19295 3.21476 2.27962 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 21 0.26418 3.03734 2.02339 2.95666 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 22 0.57843 2.26025 2.31842 1.44193 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 23 2.81207 2.74209 3.33683 0.17443 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 24 2.81207 2.74209 3.33683 0.17443 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 25 2.05356 0.99844 2.61320 0.84404 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.20734 3.99029 1.77927 1.46634 0.26236 1.09861 0.40547 26 0.67857 2.39516 1.32217 2.00291 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.24311 3.82745 1.63966 1.46634 0.26236 0.19818 1.71604 27 1.97007 0.78814 2.53009 1.12021 27 c - - _ 1.38629 1.38629 1.38629 1.38629 0.23938 3.83200 1.65434 1.46634 0.26236 2.39019 0.09608 28 0.26914 2.74258 2.51634 2.39901 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05359 3.64621 3.64621 1.46634 0.26236 0.11285 2.23757 29 0.94539 2.07831 1.52314 1.31564 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 30 1.34199 1.46730 2.22456 0.91626 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 31 1.34709 1.08736 2.26619 1.20667 31 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 32 1.43724 2.13054 2.40093 0.59238 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 33 2.91647 3.82213 0.11599 3.39600 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 34 0.57843 2.26025 2.31842 1.44193 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 35 0.54728 1.69211 2.35686 1.94749 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 36 0.51368 2.60150 1.51084 2.23655 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 37 1.41569 0.68253 2.52204 1.76253 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.20258 3.99029 1.80249 1.46634 0.26236 1.09861 0.40547 38 0.75971 2.07133 2.15473 1.23703 38 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04430 3.83200 3.83200 1.46634 0.26236 2.39019 0.09608 39 0.17560 3.12445 2.85988 2.81661 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04430 3.83200 3.83200 1.46634 0.26236 0.20239 1.69704 40 3.17743 2.34212 2.84657 0.21798 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 41 2.55778 3.38128 0.16639 3.17468 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 42 0.27245 3.18233 1.92872 2.96303 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 43 3.57948 0.16748 3.29139 2.41780 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 44 3.58157 0.16733 3.29236 2.41819 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 45 2.56011 3.38469 0.16585 3.17865 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 46 3.18529 2.34328 2.84980 0.21720 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 47 0.27166 3.18724 1.92941 2.96869 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 48 0.27133 3.18933 1.92970 2.97110 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 49 3.18628 2.08578 2.91432 0.24817 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 50 3.10472 0.15605 3.67913 2.59824 50 C - - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 51 3.10472 0.15605 3.67913 2.59824 51 C - - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 52 3.59794 0.16615 3.29989 2.42125 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 53 2.56673 3.39440 0.16431 3.18995 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 54 2.81207 2.74209 3.33683 0.17443 54 U - - - 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 55 3.18018 2.34253 2.84770 0.21771 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 56 3.58190 0.16731 3.29251 2.41825 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 57 0.27206 3.18472 1.92906 2.96579 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 58 3.58868 0.16681 3.29564 2.41953 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 59 0.27157 3.18786 1.92949 2.96941 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 60 0.27116 3.19045 1.92986 2.97239 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 61 2.20467 0.59537 2.79303 1.28330 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.03769 3.99029 3.99029 1.46634 0.26236 1.09861 0.40547 62 0.12315 3.45275 3.15638 3.17886 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.01902 3.97162 * 1.46634 0.26236 0.00000 * //