# STOCKHOLM 1.0
#=GF ID mir-279
#=GF AC RF00754
#=GF DE mir-279 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 56.0
#=GF NC 55.9
#=GF TC 56.0
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.00 -Z 2958934 CM SEQDB
#=GF CL CL00095
#=GF DR MIPF; MIPF0000184;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 19961592
#=GF RT Direct sequencing and expression analysis of a large number of miRNAs in
#=GF RT Aedes aegypti and a multi-species survey of novel mosquito miRNAs.
#=GF RA Li S, Mead EA, Liang S, Tu Z
#=GF RL BMC Genomics. 2009;10:581.
#=GF RN [2]
#=GF RM 20167119
#=GF RT Identification of microRNAs expressed in two mosquito vectors, Aedes
#=GF RT albopictus and Culex quinquefasciatus.
#=GF RA Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
#=GF RL BMC Genomics. 2010;11:119.
#=GF RN [3]
#=GF RM 20817720
#=GF RT Functional shifts in insect microRNA evolution.
#=GF RA Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S
#=GF RL Genome Biol Evol. 2010;2:686-696.
#=GF RN [4]
#=GF RM 20075255
#=GF RT Functional and evolutionary insights from the genomes of three parasitoid
#=GF RT Nasonia species.
#=GF RA Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK,
#=GF RA Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK,
#=GF RA Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA,
#=GF RA Murphy T, Oliveira DC, Smith CD, van de Zande L, Worley KC, Zdobnov EM,
#=GF RA Aerts M, Albert S, Anaya VH, Anzola JM, Barchuk AR, Behura SK, Bera AN,
#=GF RA Berenbaum MR, Bertossa RC, Bitondi MM, Bordenstein SR, Bork P,
#=GF RA Bornberg-Bauer E, Brunain M, Cazzamali G, Chaboub L, Chacko J, Chavez D,
#=GF RA Childers CP, Choi JH, Clark ME, Claudianos C, Clinton RA, Cree AG,
#=GF RA Cristino AS, Dang PM, Darby AC, de Graaf DC, Devreese B, Dinh HH, Edwards
#=GF RA R, Elango N, Elhaik E, Ermolaeva O, Evans JD, Foret S, Fowler GR, Gerlach
#=GF RA D, Gibson JD, Gilbert DG, Graur D, Grunder S, Hagen DE, Han Y, Hauser F,
#=GF RA Hultmark D, Hunter HC 4th, Hurst GD, Jhangian SN, Jiang H, Johnson RM,
#=GF RA Jones AK, Junier T, Kadowaki T, Kamping A, Kapustin Y, Kechavarzi B, Kim
#=GF RA J, Kim J, Kiryutin B, Koevoets T, Kovar CL, Kriventseva EV, Kucharski R,
#=GF RA Lee H, Lee SL, Lees K, Lewis LR, Loehlin DW, Logsdon JM Jr, Lopez JA,
#=GF RA Lozado RJ, Maglott D, Maleszka R, Mayampurath A, Mazur DJ, McClure MA,
#=GF RA Moore AD, Morgan MB, Muller J, Munoz-Torres MC, Muzny DM, Nazareth LV,
#=GF RA Neupert S, Nguyen NB, Nunes FM, Oakeshott JG, Okwuonu GO, Pannebakker BA,
#=GF RA Pejaver VR, Peng Z, Pratt SC, Predel R, Pu LL, Ranson H, Raychoudhury R,
#=GF RA Rechtsteiner A, Reese JT, Reid JG, Riddle M, Robertson HM, Romero-Severson
#=GF RA J, Rosenberg M, Sackton TB, Sattelle DB, Schluns H, Schmitt T, Schneider
#=GF RA M, Schuler A, Schurko AM, Shuker DM, Simoes ZL, Sinha S, Smith Z, Solovyev
#=GF RA V, Souvorov A, Springauf A, Stafflinger E, Stage DE, Stanke M, Tanaka Y,
#=GF RA Telschow A, Trent C, Vattathil S, Verhulst EC, Viljakainen L, Wanner KW,
#=GF RA Waterhouse RM, Whitfield JB, Wilkes TE, Williamson M, Willis JH, Wolschin
#=GF RA F, Wyder S, Yamada T, Yi SV, Zecher CN, Zhang L, Gibbs RA
#=GF RL Science. 2010;327:343-348.
#=GF RN [5]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF CC Family represents the microRNA (miRNA) precursor mir-279 imported from
#=GF CC miRBase [4].
#=GF WK Mir-279_microRNA_precursor_family
#=GF SQ 48

URS0000D4FB78_7159/4-94    UCCCAACGGUUGUCGAUGGGUGUGAAUCU-AGUG-UUUCACAUGAUUUUCGAU----AGCCUGUGACUAGAUCCACACUCAUUAACAAAAGUUGCCG
URS0000D51E7C_7176/1-73    ---------UUGUCGAUGGGUGUGAAUCU-AGUG-GUUCACAUGAGCUUUGCC----AAACUGUGACUAGAUCCACACUCAUUAACAA---------
URS0000258768_7165/1-89    UUCCUAUCAGUGUAAAUGGGUGUGAAUCU-AGUGAUUUCACAUGAAUUU---U----CGAUUGUGACUAGAUCCACACUCAUUAAUGUUGUUUGGAA
URS000028B119_7237/3-95    AUACUACUGUUUUUAGUGAGUGAGGGUCC-AGUG-UUUCACAUUGAUUUUCUU-A-GUAUUUGUGACUAGAUCCACACUCAUUAAUAACGGUAGUUC
URS000015424D_7234/1-93    AUACUACUGUUUUUAGUGAGUGAGGGUCC-AGUG-UUUCACAUUGAUUUUCUU-A-GUAUUUGUGACUAGAUCCACACUCAUUAAUAACGGUAGUUC
URS000051F81B_7238/1-93    AUACUGCUGUUUUUAGUGGGUGGGGGUCC-AGUG-UUUCACAUUGAUUUUCUU-A-GUAUUUGUGACUAGAUCCACACUCAUUAAUAACGGUAGUUC
URS000051F81B_7240/1-93    AUACUGCUGUUUUUAGUGGGUGGGGGUCC-AGUG-UUUCACAUUGAUUUUCUU-A-GUAUUUGUGACUAGAUCCACACUCAUUAAUAACGGUAGUUC
URS00007AA45E_7227/8-100   AUACUACUGUUUUUAGUGGGUGGGGGUCC-AGUG-UUUCACAUUGAUUUUCUU-A-GUAUUUGUGACUAGAUCCACACUCAUUAAUAACGGUAGUUC
URS000034E394_7220/1-93    AUACUACUGUUUUUAGUGGGUGGGGGUCC-AGUG-UUUCACAUUGAUUUUCUU-A-GUAUUUGUGACUAGAUCCACACUCAUUAAUAACGGUAGUUC
URS000006583B_7217/1-89    -UACUACUGUUUUUAGUGGGUGAGGGUCC-AGUG-UUUCACAUUGAUUUCU-----GUAUUUGUGACUAGAUCCACACUCAUUAAUAACGGUAGUUC
URS0000469515_7245/1-93    AUACUACUGUUUUUAGUGGGUGAGGGUCC-AGUG-CUUCACAUUGAUUUUCUU-A-GUAUUUGUGACUAGAUCCACACUCAUUAAUAACGGUAGUUC
URS000002152D_7260/1-91    -UACUACUGUUUUUAGUGAGUGAGGGUCC-AGUG-UUUCACAUUAAAUAUUU--A-GUAUUUGUGACUAGAUCCACACUCAUUAAUAACGGUAGUUC
URS0000588AF6_7230/1-93    GUACUACUGUUUUUAGUGAGUGAGGGUCC-AGUG-UUUCACAUU-GUUUGCUUAA-GUAUUUGUGACUAGAUCCACACUCAUUAAAAACGGUAGUUC
URS00005A489F_7244/1-94    GUACUACUGUUUUUAGUGAGUGAGGGUCC-AGUG-UUUCACAUUCGUUUUUUCAA-GUAUUUGUGACUAGAUCCACACUCAUUAACAACGGUAGUUC
URS00005A845C_7222/1-91    GUAUUACUGUUUUUAGUGGGUGAGGGUCC-AGUG-UUUCACAUU-GUUUAUUU---GUAUUUGUGACUAGAUCCACACUCAUUAAAAACGGUAGUUC
URS000075E4FE_7091/2-85    CGUCAAUUUCUUUCGAUGAGUGGAGGUUU-AGUG----CAUGUUUAUU--UACAC------CAUGACUAGAUCCACACUCAUCCAUGGAAGUUGCGA
URS0000D5397F_34740/17-98  GGUCAAUUUCUUUCGAUGAGUGGAGGUUU-AGUG----CAUGUU--UC--CACAU------CAUGACUAGAUCCACACUCAUCCAUGGAAGUUGCGA
URS0000D53765_7130/9-93    GGUCAAUUUCUUUCGAUGAGUGGAGGUUU-AGUG----CAUGUUCUUGA-UACAU------CAUGACUAGAUCCACACUCAUCCAUGGAAGUUGCGA
URS000075C8D9_7091/1-76    --UUCCUCAGA--CGAUGAGUGACCGUUU-AGUU----CAAGUUG----UCAA------UUCUUGACUAGAUUUUCACUUAUCC--UCUGCGGGCAC
URS0000D4F0E5_7130/19-100  GCCUCCUCGGA--CGAUAAGUGGAUAUCU-AUUU----CAAGUUAACGCUCAA------UUCUUGACUAGAUUUUCACUUAUCC--UCUGCGUAGGC
URS0000D553F3_51655/3-83   UCUCUUCUGGA--CGAUGAGUGAAUUUUU-AGUU----CACGUUU-UGACAAU------ACCGUGACUAGAUUUUCACUCAUCC--UCUAUGGGAGC
URS0000D50D49_34740/16-94  ACAGCUUCGGA--AGAUGGGUGAAUUUCU-AGUG---UCAAGUUA----CGGA------ACCUUGACUAGAUUUUCACUUAUCC--UUUGCGGCUGU
URS000075B144_7029/1-60    ---------------GUGGGUGUUUUUCU-AGUC--GACACUGAAU--AUUCAA----AGCUGUGACUAGAUCUACACUCAUCA-------------
URS000075B9C3_7460/17-100  UCCUGAAUUUGCCAAAUGAGUGAAGGUCU-AGUG----CACAGAAA--AUGAA------AUUGUGACUAGAUCCACACUCAUUAAGUACGUUCAGGU
URS000075ED57_7091/1-77    -----UUUGUAGUUAAUGGGUAUAGGUCU-AGUA---UCACCGGG--CUGAU-------UCUGUGACUAGAUCUACACUCAUUGAGUGCUUAUGG--
URS0000D53D58_7130/14-99   CACUGGUUGCAGUUGAUGGGUAUAGGUCU-AGUA---ACACAGUU--UUAAUA-----UUCUGUGACUAGAUCUACACUCAUUGAUUGCUUCCAGUU
URS0000D51DF7_34740/21-103 UUUUGCAAUCAGUUAAUGGGUAUAAGUCU-AGUG---UCACAGUG--UGCAU--------UUGUGACUAGAUCUACACUCAUUGAUUGCUUGCAAAC
URS0000D527A7_51655/3-85   AUAUACAUGCAGCGAGUGGGUGUAAGUCU-AGUG----CACAGUU--UUUAA------UUUUGUGACUAGAUCUACACUCAUUGAUUGCAU-UAUGA
URS000075C545_7425/17-100  AGCCGAUUGUACUGAGUGAGUGAUGGUCU-GGUG----CACGGUUU---AUCG-----AUCUGUGACUAGAUCCACACUCAUUAAGUACGUUCGGCU
URS0000759986_7070/1-65    -----------CUUGAUGGGUUCGGGUCU-AGUG---GCACGGUU-UUUUCAA-----CUUCGUGACUAGAUCCACACUCAUUAAG-----------
URS0000D54A68_7159/1-82    -----UCUGAUCUGAGCGGGUCCGUUUCU-AGUG---UCAUGUGCUGUAUUCG---AAUAUCAUGACUAGAGGCAGACUCGUUUAGGUCUGGGA---
URS000075AA14_7070/8-92    AUCCUAAAGUUUUUGAUGGGUGAGGGUUU-GGUG----CAUGUUUUAUUUUAA-------UCAUGACUAGAUCCACACUCAUCCAAAAAUUUGGUGU
URS000075C879_7029/1-64    ---------------AUGGGUGUGUGUCU-AGUG---ACAUGCGUUUUAUAUUUG-ACAGACAUGACUAGAUCCACACUCAUCC-------------
URS0000D527F4_225164/10-94 UAACCGAUAAA-UGGGUGAUUGUGAGUCU-GGUG----CAUGUUCAUGAUGACGU------CAUGACUAGAUCCACACUCAUCCACAGAAGCGGGAA
URS0000D56005_32264/3-88   GGACACUUUGACUGGAUGAAUGCGUUUCU-AGAC----CAUGUUCAUGUUGAACU---AUUCAUGACUAGAUCCACAUUCAUCCAGACAGCCAA---
URS0000D501EA_6945/3-84    UAUCGUUGCUAUUG-AUGACUGUGCCUCU-AGUC----CAUGUGAAUCU--AGCU------CAUGACUAGAUCCACACUCAUCCA-UAGAAGCGGAA
URS0000D54499_7130/9-94    UGAUGAUUUUUGUGGGCGAGUUUGCUUCU-GGUU---UCAUGUUGC-CGAGUAAC------CAUGACUAGAUCCAUACUCGUCUGCAGCCAUCAACU
URS0000D524C9_34740/13-97  UGAUGAUCUUUGUGGGCGAGUUUGCUUCU-GGUU----CAUGUCAA-AUUAACAU------CAUGACUAGAUCCAUACUCGUCUGCAGCCAUCAACU
URS000075EA73_7091/1-80    ---UGAUAUUUGUGGGCGAGUUUGCUUCU-GGUU----CAUGUUUU-AUAUUGAU------CAUGACUAGAUCCAUACUCGUCUGCAGCCAUCAA--
URS000075D979_7460/5-89    AGAUAAU-UCCAUAGGCGAGUAUGAAUGU-GGUG----CACGUUUUGAUUUAUUU------CGUGACUAGAUACAUACUCGUCUACGGUAAUCUGUU
URS000075A93F_7070/26-108  GAAAACACUGUGUUGGCGAUUGUGGGUUU-AGUC----CACGUUUU--AGUAAAC------CGUGACUAGAUCCAUACUCGUCUAUAGAG-GUUUUU
URS0000D516A6_54126/8-97   GUGUCGUGUUCCCUGCUGGGUAUGUGUCUCAGU-----CAUGCUAUCCUUGUCGUUGUACCCAUGACUAGAUCCAUACUCAGCU--GGGCUUGGCGU
URS0000D53F66_6253/3-82    UUGCCACAUUCUUUGCUGGGCAUGGCUCU-AUGU----CAUGCUAUCUAGUU--U------CAUGACUAGAUCCAUACUCAGCUAGGGGUGUG----
URS0000A5D138_6279/1-83    -----UCAUUCGUAGCUGAGCAUGGUUCUUAGU-----CAUGUGGCAUGUAAGAGAUU---CAUGACUAGAACCAUACUCAGCUA-UGUGACCCGGC
URS0000D53590_6253/3-85    UCGGCGUCACUGGAACUGGUUUGCAGUCU-AGUG----CAUGCA--AUAUGAAGU------CAUGACUAGACUGAUAACCAGCUCUAGUUUCGUUC-
URS0000D55C2C_6253/5-88    UGGGCGUCACUGGAGCUGGCUUACCGUCU-AGUG----CAUGUA--AUGUGAAAU------CAUGACUAGACUGGUAACCUGCUCUAGUUUCGUUCC
URS000079B39D_283909/5-94  UCGCUGUCGCCUUGAAUGGCUGUGGAUCA-AGUC----CAUGUUAAGAUUUCGAAUU--GUCAUGACUAGAUCCACACUCAUCCAGGUUGGCGGCUA
URS00007E4FBD_7460/1-82    ----GAUGGCCUUGGAUGGGUUUGAAUUC-AGUC----CACGUUUUUUAUUUUUAUU----CGUGACUAGAUCCACACUCAUCCAAGGAAAUCGA--
#=GC SS_cons               ::<<<<<<<<<-<<<<<<<<<<-<<<<<-.<<<-....<<<<___________._....__>>>>>>>->>>>>->>>>>>>>>>->>>>>>>>>::
#=GC RF                    uuaccaccgcuuuugaUGaGUgugggUCU.AGUg....CAcGUUaauuuUuaa.u....uUCgUGACUAGAuccAcACuCAucaauagcggugguuc
//
