INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-308 ACC RF00743 DESC mir-308 microRNA precursor family STATES 193 NODES 43 CLEN 63 W 81 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 07:15:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates_2/RF00743/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 18 EFFN 3.168457 CKSUM 347173921 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 60.30 NC 59.00 EFP7GF -10.8501 0.71926 ECMLC 0.68125 -4.33919 3.77374 1600000 301642 0.003978 ECMGC 0.46597 -13.37172 -0.87669 1600000 135097 0.002961 ECMLI 0.65976 -3.48104 4.67395 1600000 260506 0.004606 ECMGI 0.48475 -9.14504 2.24503 1600000 99990 0.004000 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 81 101 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 IL 1 1 2 1 6 1 6 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 6 82 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 70 C G - - MP 3 2 3 7 6 2 11 81 101 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -4.425 -4.433 -4.145 -0.622 -2.842 -4.574 3.276 -3.637 -4.171 -0.455 -4.479 -2.440 0.733 -4.487 1.265 -3.006 ML 4 2 3 7 6 1 4 79 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 4 79 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 77 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 5 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 6 80 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 69 u a - - MP 9 8 6 13 6 2 10 79 99 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -0.392 -2.159 -2.187 0.903 -2.051 -3.031 1.469 -2.450 -1.100 0.873 -2.801 -0.671 2.340 -2.334 -0.157 -1.388 ML 10 8 6 13 6 1 4 77 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 4 77 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 5 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 5 78 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 68 C G - - MP 15 14 6 19 6 2 10 77 97 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -5.458 -5.440 -4.986 -1.616 -3.535 -5.277 3.756 -4.437 -5.081 -1.474 -5.228 -3.416 -0.132 -5.464 -1.279 -3.896 ML 16 14 6 19 6 1 4 75 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 3 75 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 5 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 5 76 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 67 g u - - MP 21 20 6 25 6 2 9 75 95 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -4.037 -2.727 -4.178 0.806 -5.258 -5.467 -0.717 -4.326 -3.892 2.321 -4.397 2.872 -0.955 -4.661 -2.667 -2.903 ML 22 20 6 25 6 1 3 73 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 3 73 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 4 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 5 74 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 66 C G - - MP 27 26 6 31 6 2 9 73 93 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -4.691 -4.702 -4.349 -0.866 -2.979 -4.729 3.502 -3.804 -4.389 -0.696 -4.656 -2.703 0.559 -4.722 0.355 -3.210 ML 28 26 6 31 6 1 3 71 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 3 71 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 4 72 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 4 72 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 65 A U - - MP 33 32 6 37 6 2 8 71 91 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -3.868 -2.756 -3.994 3.037 -4.940 -5.661 -0.637 -4.145 -3.776 1.048 -4.362 1.868 -0.835 -4.622 -2.518 -2.758 ML 34 32 6 37 6 1 3 69 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 3 69 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 4 70 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 4 70 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 64 G C - - MP 39 38 6 43 6 2 8 69 89 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -4.827 -1.017 -4.877 0.162 -5.702 -4.766 -0.938 -5.340 -4.519 3.634 -4.823 -0.865 -1.219 -4.456 -2.960 -3.805 ML 40 38 6 43 6 1 2 67 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 2 67 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 3 68 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 4 68 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 63 U A - - MP 45 44 6 49 6 2 8 67 87 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -5.249 -5.088 -4.962 -1.325 -3.706 -5.425 0.631 -4.465 -4.960 -1.191 -5.280 -2.957 3.667 -5.347 -1.358 -3.645 ML 46 44 6 49 6 1 2 65 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 65 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 3 66 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 3 66 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 62 A U - - MP 51 50 6 55 6 2 7 65 85 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -4.574 -3.432 -4.504 3.670 -5.278 -6.442 -0.924 -4.491 -4.400 0.228 -4.984 -0.803 -1.335 -5.474 -2.860 -3.317 ML 52 50 6 55 6 1 2 63 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 2 63 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 3 64 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 3 64 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 61 U A - - MP 57 56 6 61 6 2 5 63 83 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -5.249 -5.088 -4.962 -1.325 -3.706 -5.425 0.631 -4.465 -4.960 -1.191 -5.280 -2.957 3.667 -5.347 -1.358 -3.645 ML 58 56 6 61 6 1 2 61 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 2 61 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 59 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 2 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 2 62 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 60 a u - - MP 63 62 6 67 4 2 4 61 81 -2.577 -7.590 -0.301 -6.004 -3.479 -2.963 -3.523 2.747 -3.223 -4.430 1.025 -3.539 -3.506 1.034 -4.003 -0.698 1.639 -3.786 -0.937 -2.447 ML 64 62 6 67 4 1 1 60 80 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 1 60 80 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 0 58 79 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 2 60 81 -2.653 -3.337 -0.465 -5.822 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 2 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - U - - - ML 69 68 6 71 3 1 2 58 78 -8.739 -0.014 -7.057 -1.060 -1.027 -1.316 1.394 D 70 68 6 71 3 0 0 57 77 -5.620 -0.734 -1.403 IL 71 71 3 71 3 1 1 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 59 - U - - MR 72 71 3 74 5 1 2 57 77 -7.455 -0.030 -7.271 -7.483 -8.375 -0.883 -1.215 -0.669 1.262 D 73 71 3 74 5 0 0 56 76 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 14 58 U A - - MP 75 74 3 79 6 2 3 56 76 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -3.838 -3.886 -3.760 -0.293 0.327 -4.353 1.456 -3.491 -3.784 -0.174 -4.193 -2.031 3.116 -4.017 -0.529 -2.702 ML 76 74 3 79 6 1 1 54 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 15 57 c g - - MP 81 80 6 85 6 2 3 54 74 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -4.446 -4.492 -4.147 -0.739 -2.839 -4.552 2.746 -3.642 -4.187 -0.589 -4.480 -2.569 0.671 -4.501 2.483 -3.036 ML 82 80 6 85 6 1 1 52 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 16 56 u g - - MP 87 86 6 91 6 2 2 52 72 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -4.634 -4.709 -4.255 -0.970 -2.869 -4.597 2.300 -3.699 -4.311 -0.831 -4.564 -2.832 0.568 -4.647 2.954 -3.153 ML 88 86 6 91 6 1 1 50 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 17 55 U A - - MP 93 92 6 97 6 2 2 50 70 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -5.249 -5.088 -4.962 -1.325 -3.706 -5.425 0.631 -4.465 -4.960 -1.191 -5.280 -2.957 3.667 -5.347 -1.358 -3.645 ML 94 92 6 97 6 1 1 48 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 18 54 G C - - MP 99 98 6 103 6 2 2 48 68 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -5.533 -3.480 -5.752 -0.353 -6.333 -4.988 -1.501 -6.018 -4.806 3.782 -5.095 -1.221 -1.869 -4.975 -3.589 -4.618 ML 100 98 6 103 6 1 1 46 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 19 53 U A - - MP 105 104 6 109 6 2 2 46 66 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -5.249 -5.088 -4.962 -1.325 -3.706 -5.425 0.631 -4.465 -4.960 -1.191 -5.280 -2.957 3.667 -5.347 -1.358 -3.645 ML 106 104 6 109 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 20 52 G C - - MP 111 110 6 115 4 2 2 44 64 -2.198 -7.590 -0.394 -6.004 -5.533 -3.480 -5.752 -0.353 -6.333 -4.988 -1.501 -6.018 -4.806 3.782 -5.095 -1.221 -1.869 -4.975 -3.589 -4.618 ML 112 110 6 115 4 1 1 43 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 42 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 41 61 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 43 63 -2.045 -3.728 -1.261 -1.915 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 23 - U - - - ML 117 116 6 119 3 1 1 41 61 -8.590 -0.016 -6.908 -0.679 -1.062 -0.472 1.121 D 118 116 6 119 3 0 0 40 60 -6.444 -0.368 -2.227 IL 119 119 3 119 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 51 - U - - MR 120 119 3 122 5 1 1 40 60 -7.455 -0.030 -7.271 -7.483 -8.375 -2.262 -2.128 -3.026 1.782 D 121 119 3 122 5 0 0 38 58 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 40 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 24 50 u a - - MP 123 122 3 127 6 2 2 39 59 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -0.272 -2.316 -2.325 0.801 -0.523 -3.153 1.554 -2.538 -2.374 0.767 -2.927 -0.807 2.345 -2.477 -0.148 -1.503 ML 124 122 3 127 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 37 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 38 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 25 49 U A - - MP 129 128 6 133 6 2 2 37 57 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -5.249 -5.088 -4.962 -1.325 -3.706 -5.425 0.631 -4.465 -4.960 -1.191 -5.280 -2.957 3.667 -5.347 -1.358 -3.645 ML 130 128 6 133 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 36 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 26 48 u a - - MP 135 134 6 139 6 2 2 35 55 -9.289 -9.228 -0.019 -8.005 -8.285 -8.680 -3.587 -3.228 -3.592 0.466 -2.942 -4.360 1.447 -3.459 -3.582 1.771 -4.052 -1.033 2.675 -3.794 -0.593 -2.469 ML 136 134 6 139 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 34 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 34 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 27 47 G C - - MP 141 140 6 145 4 2 2 33 53 -7.383 -7.590 -0.039 -6.004 -3.938 -2.870 -3.882 0.693 -3.986 -4.424 0.548 -4.138 -3.965 3.145 -4.329 -0.565 1.189 -3.838 -1.473 -2.805 ML 142 140 6 145 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 33 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 32 52 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 34 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - u - - - ML 147 146 6 149 3 1 1 30 50 -8.372 -0.090 -4.125 -0.193 -0.682 -0.605 0.883 D 148 146 6 149 3 0 0 29 49 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - U - - - ML 150 149 3 152 3 1 1 29 49 -8.299 -0.016 -6.953 -2.122 -2.010 -2.881 1.760 D 151 149 3 152 3 0 0 28 48 -6.860 -2.373 -0.325 IL 152 152 3 152 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - u - - - ML 153 152 3 155 3 1 1 28 48 -8.299 -0.016 -6.953 -0.264 -0.735 -0.376 0.845 D 154 152 3 155 3 0 0 27 46 -6.860 -2.373 -0.325 IL 155 155 3 155 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - c - - - ML 156 155 3 158 3 1 1 27 47 -8.299 -0.016 -6.953 0.012 0.365 -1.004 0.270 D 157 155 3 158 3 0 0 26 45 -6.860 -2.373 -0.325 IL 158 158 3 158 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - u - - - ML 159 158 3 161 3 1 1 26 46 -8.299 -0.184 -3.100 -0.062 -0.519 0.153 0.302 D 160 158 3 161 3 0 0 24 44 -6.860 -2.373 -0.325 IL 161 161 3 161 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - U - - - ML 162 161 3 164 3 1 1 25 45 -8.133 -0.018 -6.787 -1.803 -1.745 -2.551 1.698 D 163 161 3 164 3 0 0 23 43 -7.698 -3.211 -0.173 IL 164 164 3 164 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - U - - - ML 165 164 3 167 3 1 1 24 44 -8.133 -0.018 -6.787 -0.628 -0.558 -1.538 1.220 D 166 164 3 167 3 0 0 22 42 -7.698 -3.211 -0.173 IL 167 167 3 167 3 1 1 26 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - U - - - ML 168 167 3 170 3 1 1 23 43 -8.133 -0.303 -2.429 -0.743 -1.190 -1.756 1.416 D 169 167 3 170 3 0 0 21 41 -7.698 -3.211 -0.173 IL 170 170 3 170 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - u - - - ML 171 170 3 173 3 1 1 22 42 -7.852 -0.022 -6.507 -0.254 -0.423 -0.167 0.609 D 172 170 3 173 3 0 0 21 41 -8.410 -1.134 -0.885 IL 173 173 3 173 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - g - - - ML 174 173 3 176 3 1 1 21 41 -8.133 -0.018 -6.787 0.322 -1.295 0.718 -0.518 D 175 173 3 176 3 0 0 20 40 -7.698 -3.211 -0.173 IL 176 176 3 176 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - a - - - ML 177 176 3 179 3 1 1 20 40 -8.133 -0.018 -6.787 0.937 -0.058 -1.220 -0.524 D 178 176 3 179 3 0 0 20 40 -7.698 -3.211 -0.173 IL 179 179 3 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - A - - - ML 180 179 3 182 3 1 1 19 39 -3.369 -0.161 -6.787 1.486 -1.663 -1.599 -0.853 D 181 179 3 182 3 0 0 20 40 -0.606 -3.211 -2.089 IL 182 182 3 182 3 1 1 21 40 -1.363 -0.772 -5.281 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - a - - - ML 183 182 3 185 3 1 1 14 33 -8.372 -0.016 -7.026 0.821 -1.377 0.243 -0.589 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - c - - - ML 186 185 3 188 3 1 1 13 31 -8.372 -0.016 -7.026 -0.005 0.412 -0.582 0.008 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - U - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -1.020 -1.007 -1.232 1.369 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-308 ACC RF00743 DESC mir-308 microRNA precursor family LENG 63 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 07:15:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates_2/RF00743/CM NSEQ 18 EFFN 4.882324 CKSUM 347173921 STATS LOCAL MSV -7.4536 0.71926 STATS LOCAL VITERBI -8.6093 0.71926 STATS LOCAL FORWARD -3.1853 0.71926 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44057 1.66073 1.47879 1.06336 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 0.00000 * 1 3.46022 0.38294 3.25981 1.39301 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 2 1.67424 1.69361 1.75536 0.78559 2 u - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 3 4.21232 0.08872 4.08142 2.93360 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 4 2.34315 3.66777 0.16772 3.41587 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 5 3.54241 0.24801 3.36767 1.85638 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 6 0.51608 3.71614 1.06068 3.42359 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 7 2.42461 3.74200 0.14946 3.62641 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 8 4.14783 2.87008 4.02108 0.09478 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 9 0.11483 3.94337 2.70417 3.80891 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 10 4.14306 2.86949 4.01832 0.09495 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 11 0.61539 2.31371 2.12134 1.42377 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.21664 1.71242 4.24392 0.15213 1.95815 1.09861 0.40547 12 2.43626 2.29068 2.43670 0.32315 13 U - - - 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 13 3.26020 1.41119 3.08900 0.39717 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 14 3.53119 0.80832 3.36996 0.71186 15 u - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 15 3.66703 1.19071 3.52893 0.44456 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 16 4.15446 2.87089 4.02491 0.09454 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 17 3.19672 4.11686 0.07725 4.06556 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 18 4.14794 2.87009 4.02114 0.09478 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 19 3.19477 4.11382 0.07747 4.06144 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.14442 2.11920 4.24392 0.54380 0.86879 1.09861 0.40547 20 2.09539 2.34516 1.73018 0.50436 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 21 1.73597 1.45785 2.08643 0.76163 24 u - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 22 4.14970 2.87030 4.02216 0.09471 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 23 2.53371 1.91202 1.40174 0.64115 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 24 2.33780 2.61434 0.42188 1.74624 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 25 1.57133 1.93881 1.81320 0.72314 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.08626 4.24392 2.68388 1.46634 0.26236 1.09861 0.40547 26 3.38969 3.22983 3.92860 0.09756 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03081 4.18847 4.18847 1.46634 0.26236 1.91088 0.16011 27 1.64508 1.98786 1.62930 0.74666 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03081 4.18847 4.18847 1.46634 0.26236 1.91088 0.16011 28 1.40865 1.05820 2.17484 1.22139 31 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03081 4.18847 4.18847 1.46634 0.26236 1.91088 0.16011 29 1.47891 1.77501 1.22124 1.17841 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.16118 4.18847 2.01220 1.46634 0.26236 1.91088 0.16011 30 3.14373 3.02046 3.67757 0.12464 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03502 4.06231 4.06231 1.46634 0.26236 2.67913 0.07109 31 1.99374 1.85538 2.69641 0.44633 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03502 4.06231 4.06231 1.46634 0.26236 2.67913 0.07109 32 2.09979 2.48491 2.92808 0.30018 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.26061 4.06231 1.55016 1.46634 0.26236 2.67913 0.07109 33 1.65137 1.70537 1.46425 0.92822 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04370 3.84539 3.84539 1.46634 0.26236 0.74224 0.64635 34 1.17580 2.46767 0.79095 1.87580 37 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03502 4.06231 4.06231 1.46634 0.26236 2.67913 0.07109 35 0.65260 1.38083 2.44724 1.95611 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03502 4.06231 4.06231 1.46634 0.26236 0.14763 1.98598 36 0.27072 2.81157 2.79417 2.15509 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.12162 2.30095 4.24392 1.13997 0.38541 1.09861 0.40547 37 0.76509 2.55349 1.16109 1.93967 44 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 38 1.43042 1.02153 1.80821 1.44053 45 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 39 2.39987 2.27273 2.36155 0.33972 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 40 1.84694 0.46511 2.44043 2.06286 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 41 0.69835 1.48624 1.74960 2.27763 48 a - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 42 0.10721 4.23446 2.70442 3.89863 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 43 0.62015 2.25760 1.50605 1.99694 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 44 3.49322 3.31902 4.03400 0.08806 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 45 4.19788 0.09431 3.97532 2.87885 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 46 0.10805 4.21865 2.70146 3.88288 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 47 4.20667 0.09397 3.97989 2.88045 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 48 0.10769 4.22546 2.70274 3.88966 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 49 2.58155 3.67813 0.14335 3.42279 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 50 2.51920 3.52652 0.15917 3.29106 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 51 0.29595 3.25751 1.77490 3.03257 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 52 2.30049 2.50059 1.88593 0.40637 59 U - - - 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 53 1.51220 2.36633 2.14118 0.56522 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 54 0.10828 4.21431 2.70064 3.87856 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 55 4.01371 3.09374 3.74711 0.09100 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 56 0.10809 4.21799 2.70134 3.88222 63 A - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 57 3.81903 0.13568 3.57917 2.56352 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 58 3.61213 2.42009 3.49044 0.15829 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 59 2.54746 3.52278 0.15637 3.29786 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 60 3.61566 1.23068 3.45232 0.43181 67 U - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 61 3.22088 4.24622 0.07552 3.98991 68 G - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 62 0.70930 2.09146 1.50232 1.82084 69 a - - > 1.38629 1.38629 1.38629 1.38629 0.02912 4.24392 4.24392 1.46634 0.26236 1.09861 0.40547 63 2.47282 3.41839 0.17175 3.20151 70 G - - > 1.38629 1.38629 1.38629 1.38629 0.01467 4.22947 * 1.46634 0.26236 0.00000 * //