INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-155 ACC RF00731 DESC microRNA mir-155 STATES 199 NODES 49 CLEN 65 W 83 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 07:28:41 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00731/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 25 EFFN 2.651978 CKSUM 2666455095 NULL 0.000 0.000 0.000 0.000 GA 56.00 TC 56.00 NC 55.90 EFP7GF -10.2383 0.71922 ECMLC 0.65720 -3.67316 4.39654 1600000 241228 0.004975 ECMGC 0.42947 -14.72705 -1.66965 1600000 109013 0.003669 ECMLI 0.64284 -2.53796 5.19497 1600000 173008 0.006936 ECMGI 0.45711 -10.21528 1.22276 1600000 74597 0.005362 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 83 103 -7.217 -7.424 -0.428 -2.034 IL 1 1 2 1 4 1 15 86 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - c - - - ML 3 2 3 5 3 1 15 83 103 -7.870 -0.022 -6.524 -0.325 0.404 -0.578 0.274 D 4 2 3 5 3 0 10 81 102 -7.917 -1.404 -0.695 IL 5 5 3 5 3 1 14 84 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 14 82 102 -8.021 -0.020 -6.675 -0.533 -0.584 -0.765 1.038 D 7 5 3 8 3 0 9 80 100 -7.432 -2.945 -0.210 IL 8 8 3 8 3 1 13 83 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - g - - - ML 9 8 3 11 3 1 13 81 101 -8.408 -0.115 -3.764 -0.226 -1.283 0.964 -0.353 D 10 8 3 11 3 0 8 79 100 -6.505 -1.619 -0.592 IL 11 11 3 11 3 1 13 81 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 70 - g - - MR 12 11 3 14 3 1 13 80 100 -8.312 -0.019 -6.630 0.063 -0.704 0.454 -0.041 D 13 11 3 14 3 0 7 78 99 -7.837 -0.852 -1.179 IR 14 14 3 14 3 1 12 80 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 69 - A - - MR 15 14 3 17 3 1 13 79 99 -8.507 -0.017 -6.825 1.269 -0.669 -1.348 -0.817 D 16 14 3 17 3 0 6 77 98 -7.025 -0.802 -1.255 IR 17 17 3 17 3 1 10 79 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 68 - c - - MR 18 17 3 20 5 1 12 78 98 -7.315 -0.033 -7.131 -7.343 -8.235 -0.836 0.994 -1.453 0.115 D 19 17 3 20 5 0 4 76 97 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 9 78 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 67 u a - - MP 21 20 3 25 6 2 13 77 97 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -3.135 -3.145 -3.194 0.384 -2.542 -3.941 1.659 -3.117 -3.206 0.555 -3.702 -1.282 2.664 -3.379 0.929 -1.164 ML 22 20 3 25 6 1 6 75 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 6 75 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 2 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 8 76 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 8 76 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 66 U A - - MP 27 26 6 31 6 2 13 75 95 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -4.817 -4.652 -4.583 -0.908 -3.400 -5.087 0.936 -4.136 -4.583 -0.732 -4.924 -2.531 3.560 -4.939 -1.062 -3.334 ML 28 26 6 31 6 1 6 73 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 6 73 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 1 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 7 74 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 8 74 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 65 A U - - MP 33 32 6 37 6 2 12 73 93 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -4.265 -3.184 -4.239 3.568 -4.828 -5.946 -0.495 -4.248 -4.122 0.566 -4.693 -0.591 -0.910 -5.046 -2.434 -3.052 ML 34 32 6 37 6 1 5 71 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 5 71 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 1 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 7 72 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 7 72 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 64 A U - - MP 39 38 6 43 6 2 12 71 91 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -4.265 -3.184 -4.239 3.568 -4.828 -5.946 -0.495 -4.248 -4.122 0.566 -4.693 -0.591 -0.910 -5.046 -2.434 -3.052 ML 40 38 6 43 6 1 5 69 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 5 69 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 1 66 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 6 70 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 7 70 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 63 U A - - MP 45 44 6 49 6 2 11 69 89 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -4.817 -4.652 -4.583 -0.908 -3.400 -5.087 0.936 -4.136 -4.583 -0.732 -4.924 -2.531 3.560 -4.939 -1.062 -3.334 ML 46 44 6 49 6 1 5 67 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 5 67 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 1 64 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 6 68 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 6 68 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 62 G C - - MP 51 50 6 55 6 2 11 67 87 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -5.235 -3.333 -5.397 -0.139 -5.923 -4.880 -1.165 -5.663 -4.635 3.737 -4.939 -1.055 -1.538 -4.787 -3.231 -4.267 ML 52 50 6 55 6 1 4 65 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 4 65 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 6 66 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 6 66 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 61 C G - - MP 57 56 6 61 6 2 10 65 85 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -5.107 -5.060 -4.699 -1.250 -3.306 -5.037 3.692 -4.172 -4.772 -1.076 -4.968 -3.019 0.145 -5.137 -1.032 -3.595 ML 58 56 6 61 6 1 4 63 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 4 63 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 5 64 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 6 64 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 60 U A - - MP 63 62 6 67 6 2 9 63 83 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -4.817 -4.652 -4.583 -0.908 -3.400 -5.087 0.936 -4.136 -4.583 -0.732 -4.924 -2.531 3.560 -4.939 -1.062 -3.334 ML 64 62 6 67 6 1 4 61 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 4 61 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 5 62 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 5 62 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 59 A U - - MP 69 68 6 73 6 2 8 61 81 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -0.709 -2.768 -3.376 3.218 -3.621 -4.483 0.235 -3.587 -3.399 1.004 -3.948 -0.524 -0.029 -3.706 -1.522 -2.408 ML 70 68 6 73 6 1 3 59 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 3 59 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 57 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 4 60 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 5 60 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 58 A U - - MP 75 74 6 79 6 2 7 59 79 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -4.265 -3.184 -4.239 3.568 -4.828 -5.946 -0.495 -4.248 -4.122 0.566 -4.693 -0.591 -0.910 -5.046 -2.434 -3.052 ML 76 74 6 79 6 1 3 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 2 57 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 4 58 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 4 58 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 57 U G - - MP 81 80 6 85 4 2 5 57 77 -7.217 -7.424 -0.044 -5.838 -4.369 -4.394 -4.041 -0.701 -2.731 -4.424 1.565 -3.536 -4.093 -0.537 -4.368 -2.487 1.316 -4.417 3.061 -2.952 ML 82 80 6 85 4 1 2 57 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 56 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 55 76 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 3 58 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 3 57 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - C - - - ML 87 86 6 89 3 1 4 54 75 -8.216 -0.017 -6.870 -1.554 1.469 -2.404 -0.509 D 88 86 6 89 3 0 0 53 74 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 2 56 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - G - - - ML 90 89 3 92 3 1 4 53 74 -8.216 -0.017 -6.870 -2.108 -3.403 1.819 -2.789 D 91 89 3 92 3 0 0 52 72 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 2 55 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - U - - - ML 93 92 3 95 3 1 3 52 73 -8.216 -0.017 -6.870 -1.962 -1.877 -2.716 1.731 D 94 92 3 95 3 0 0 51 71 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 2 54 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - G - - - ML 96 95 3 98 3 1 3 51 72 -8.216 -0.017 -6.870 -2.108 -3.403 1.819 -2.789 D 97 95 3 98 3 0 0 50 70 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 53 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - A - - - ML 99 98 3 101 3 1 2 50 71 -8.591 -0.016 -6.909 1.809 -2.882 -2.464 -2.477 D 100 98 3 101 3 0 0 49 70 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 51 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 56 - U - - MR 102 101 3 104 3 1 2 49 70 -8.591 -0.016 -6.909 -1.272 -0.735 -2.019 1.453 D 103 101 3 104 3 0 0 48 68 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 50 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 55 - A - - MR 105 104 3 107 3 1 1 48 69 -8.591 -0.016 -6.909 1.055 -0.190 -1.302 -0.644 D 106 104 3 107 3 0 0 47 67 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 49 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 54 - C - - MR 108 107 3 110 5 1 1 47 68 -2.751 -0.260 -7.131 -7.343 -8.235 -0.977 1.223 -0.934 -0.655 D 109 107 3 110 5 0 0 46 66 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 47 68 -2.960 -0.319 -6.471 -4.639 -5.744 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 52 U A - - MP 111 110 3 115 6 2 2 46 67 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -4.345 -4.308 -4.180 -0.581 -3.061 -4.710 1.273 -3.796 -4.196 -0.373 -4.565 -2.316 3.360 -4.466 0.032 -3.009 ML 112 110 3 115 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 44 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 42 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 45 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 51 A U - - MP 117 116 6 121 6 2 2 44 65 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -4.265 -3.184 -4.239 3.568 -4.828 -5.946 -0.495 -4.248 -4.122 0.566 -4.693 -0.591 -0.910 -5.046 -2.434 -3.052 ML 118 116 6 121 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 40 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 43 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 50 G C - - MP 123 122 6 127 6 2 2 42 63 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -5.235 -3.333 -5.397 -0.139 -5.923 -4.880 -1.165 -5.663 -4.635 3.737 -4.939 -1.055 -1.538 -4.787 -3.231 -4.267 ML 124 122 6 127 6 1 1 41 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 39 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 41 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 49 G C - - MP 129 128 6 133 4 2 2 40 61 -7.217 -7.424 -0.044 -5.838 -5.235 -3.333 -5.397 -0.139 -5.923 -4.880 -1.165 -5.663 -4.635 3.737 -4.939 -1.055 -1.538 -4.787 -3.231 -4.267 ML 130 128 6 133 4 1 1 40 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 40 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 39 59 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 41 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - G - - - ML 135 134 6 137 3 1 1 38 58 -8.591 -0.016 -6.909 -2.108 -3.403 1.819 -2.789 D 136 134 6 137 3 0 0 37 57 -5.620 -0.734 -1.403 IL 137 137 3 137 3 1 1 39 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 48 - u - - MR 138 137 3 140 5 1 1 37 57 -7.315 -0.033 -7.131 -7.343 -8.235 0.049 -0.641 -1.258 0.931 D 139 137 3 140 5 0 0 35 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 140 140 3 140 5 1 1 37 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 47 G C - - MP 141 140 3 145 6 2 2 36 56 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -5.235 -3.333 -5.397 -0.139 -5.923 -4.880 -1.165 -5.663 -4.635 3.737 -4.939 -1.055 -1.538 -4.787 -3.231 -4.267 ML 142 140 3 145 6 1 1 34 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 3 145 6 1 1 34 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 3 145 6 0 0 32 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 35 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 35 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 46 U A - - MP 147 146 6 151 6 2 2 34 54 -9.216 -9.155 -0.020 -7.932 -8.212 -8.607 -4.817 -4.652 -4.583 -0.908 -3.400 -5.087 0.936 -4.136 -4.583 -0.732 -4.924 -2.531 3.560 -4.939 -1.062 -3.334 ML 148 146 6 151 6 1 1 33 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 33 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 33 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 45 u g - - MP 153 152 6 157 4 2 2 32 52 -7.217 -7.424 -0.044 -5.838 -4.217 -4.240 -3.948 -0.559 -2.706 -4.375 1.588 -3.490 -3.994 -0.387 -4.298 -2.335 1.628 -4.293 2.906 -2.864 ML 154 152 6 157 4 1 1 32 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 31 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 30 51 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 33 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 32 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - U - - - ML 159 158 6 161 3 1 1 30 50 -8.216 -0.017 -6.870 -1.307 -0.810 -2.052 1.477 D 160 158 6 161 3 0 0 28 48 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 31 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - U - - - ML 162 161 3 164 3 1 1 28 49 -8.216 -0.017 -6.870 -0.663 -1.221 -1.768 1.404 D 163 161 3 164 3 0 0 27 47 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 30 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - u - - - ML 165 164 3 167 3 1 1 27 48 -8.216 -0.017 -6.870 -0.448 -0.683 -0.123 0.787 D 166 164 3 167 3 0 0 26 46 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 29 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - u - - - ML 168 167 3 170 3 1 1 26 47 -8.216 -0.017 -6.870 0.385 -0.898 -0.256 0.401 D 169 167 3 170 3 0 0 25 45 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 28 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - c - - - ML 171 170 3 173 3 1 1 25 46 -8.216 -0.017 -6.870 -0.231 0.639 -0.847 0.048 D 172 170 3 173 3 0 0 24 44 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 27 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - c - - - ML 174 173 3 176 3 1 1 24 45 -8.216 -0.017 -6.870 -0.499 0.888 -0.872 -0.158 D 175 173 3 176 3 0 0 23 43 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 26 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - U - - - ML 177 176 3 179 3 1 1 23 44 -8.216 -0.171 -3.204 -1.057 -1.233 -1.343 1.433 D 178 176 3 179 3 0 0 22 42 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 25 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 35 - c - - - ML 180 179 3 182 3 1 1 22 43 -8.064 -0.019 -6.718 -0.349 0.764 -1.390 0.183 D 181 179 3 182 3 0 0 21 41 -7.245 -2.758 -0.242 IL 182 182 3 182 3 1 1 24 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 36 - u - - - ML 183 182 3 185 3 1 1 21 42 -8.064 -0.019 -6.718 -0.261 0.352 -0.769 0.381 D 184 182 3 185 3 0 0 21 41 -7.245 -2.758 -0.242 IL 185 185 3 185 3 1 1 23 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 37 - g - - - ML 186 185 3 188 3 1 1 20 41 -2.713 -0.255 -6.718 0.424 -1.160 0.515 -0.356 D 187 185 3 188 3 0 0 21 41 -0.914 -2.758 -1.637 IL 188 188 3 188 3 1 1 21 42 -1.311 -0.810 -5.241 0.000 0.000 0.000 0.000 [ MATL 45 ] 42 - A - - - ML 189 188 3 191 3 1 1 15 33 -8.216 -0.017 -6.870 1.452 -1.277 -1.556 -0.969 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 43 - c - - - ML 192 191 3 194 3 1 1 13 31 -8.216 -0.017 -6.870 -0.180 0.670 -1.379 0.191 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 44 - U - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 -0.301 -0.958 -0.634 1.021 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-155 ACC RF00731 DESC microRNA mir-155 LENG 65 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 07:28:41 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00731/CM NSEQ 25 EFFN 3.585815 CKSUM 2666455095 STATS LOCAL MSV -8.0858 0.71922 STATS LOCAL VITERBI -8.8936 0.71922 STATS LOCAL FORWARD -3.9436 0.71922 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36825 1.59944 1.48943 1.14590 1.38629 1.38629 1.38629 1.38629 0.30761 4.11140 1.39265 1.46634 0.26236 0.00000 * 1 1.68730 1.04436 1.80094 1.21093 1 c - - : 1.38629 1.38629 1.38629 1.38629 0.04361 3.84739 3.84739 1.46634 0.26236 0.93174 0.50066 2 1.86636 1.84717 1.95304 0.60552 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.03874 3.96329 3.96329 1.46634 0.26236 2.43379 0.09179 3 1.61770 2.40090 0.63844 1.69885 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.03874 3.96329 3.96329 1.46634 0.26236 0.19287 1.74064 4 2.40665 1.61219 2.20875 0.50983 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 5 3.59933 2.40198 3.41974 0.16323 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 6 0.18271 3.43306 2.31304 3.33152 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 7 0.18264 3.43360 2.31317 3.33222 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 8 3.60445 2.40251 3.42243 0.16290 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 9 2.92276 3.74482 0.10823 3.68284 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 10 3.73526 0.13966 3.57488 2.54515 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 11 3.60246 2.40230 3.42138 0.16303 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 12 0.31275 2.83703 1.95698 2.67827 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 13 0.18282 3.43211 2.31281 3.33027 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 14 3.32172 1.78896 3.15811 0.28201 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 15 2.75486 0.29204 3.36080 1.86473 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 16 3.21190 4.14993 0.08381 3.71543 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 17 3.10571 2.98835 3.63865 0.12948 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 18 3.21190 4.14993 0.08381 3.71543 18 G - - - 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 19 0.08927 3.75678 3.43379 3.51394 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 20 3.27855 2.05186 3.07955 0.23846 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 21 0.18279 3.43234 2.31286 3.33058 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 22 2.92288 3.74499 0.10821 3.68307 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 23 2.92309 3.74529 0.10818 3.68348 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 24 3.21190 4.14993 0.08381 3.71543 24 G - - - 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 25 2.92804 3.75233 0.10743 3.69301 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 26 3.61471 2.40356 3.42782 0.16226 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 27 3.23916 1.76875 3.06121 0.29649 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 28 2.53510 2.03761 3.05581 0.29663 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 29 1.96244 2.41920 2.82987 0.34042 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 30 1.79104 1.91552 1.44302 0.79910 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 31 1.10795 2.08584 1.55654 1.09453 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 32 1.60328 0.87504 2.01608 1.39134 32 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 33 1.83878 0.69060 2.03634 1.56442 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 34 2.34339 2.43432 2.43835 0.31603 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.15275 4.11140 2.07727 1.46634 0.26236 1.09861 0.40547 35 1.70409 0.77873 2.49096 1.28648 35 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03747 3.99611 3.99611 1.46634 0.26236 2.26650 0.10945 36 1.62535 1.08639 1.95102 1.12825 36 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03747 3.99611 3.99611 1.46634 0.26236 0.23237 1.57335 37 1.08977 2.29115 0.96970 1.69630 37 g - - _ 1.38629 1.38629 1.38629 1.38629 0.19668 1.81916 4.11140 0.90151 0.52080 1.09861 0.40547 38 0.32045 2.36093 2.65625 2.21062 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 39 1.55935 0.84953 2.47872 1.27920 43 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 40 1.65731 2.16351 1.84581 0.62263 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 41 1.59309 3.22100 0.34697 2.99654 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 42 0.18366 3.62722 2.23996 3.36010 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 43 3.89399 0.12787 3.61274 2.62159 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 44 1.36353 1.88835 2.36167 0.69583 48 u - - - 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 45 3.84458 0.13054 3.58873 2.61252 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 46 3.83859 0.13087 3.58578 2.61139 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 47 3.52788 2.66309 3.23122 0.14921 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 48 0.31281 3.23353 1.70990 3.03011 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.23147 1.65942 4.11140 0.16415 1.88793 1.09861 0.40547 49 2.32201 0.42817 2.10997 2.04809 54 C - - - 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 50 0.59192 1.49717 2.44896 1.99076 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 51 2.50655 1.97534 3.02847 0.31287 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 52 1.84030 3.31466 0.27616 3.07492 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 53 3.54273 2.66567 3.23795 0.14819 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 54 2.32246 2.22727 2.63903 0.32474 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 55 0.18502 3.61360 2.23762 3.34544 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 56 2.82472 3.73936 0.12003 3.50608 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 57 3.85241 0.13011 3.59258 2.61398 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 58 0.18476 3.61623 2.23807 3.34826 63 A - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 59 3.55118 2.66713 3.24176 0.14762 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 60 3.55464 2.66772 3.24331 0.14738 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 61 0.18410 3.62278 2.23920 3.35532 66 A - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 62 0.79104 2.38314 1.12368 2.04573 67 a - - > 1.38629 1.38629 1.38629 1.38629 0.03332 4.11140 4.11140 1.46634 0.26236 1.09861 0.40547 63 2.13014 0.61545 2.52765 1.34349 68 C - - : 1.38629 1.38629 1.38629 1.38629 0.10286 4.11140 2.50883 1.46634 0.26236 1.09861 0.40547 64 0.43911 1.87357 2.49129 2.12851 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.20142 4.04421 1.80239 1.46634 0.26236 1.94101 0.15497 65 1.37728 1.91487 1.00377 1.45295 70 g - - : 1.38629 1.38629 1.38629 1.38629 0.02121 3.86400 * 1.46634 0.26236 0.00000 * //