# STOCKHOLM 1.0
#=GF ID mir-315
#=GF AC RF00717
#=GF DE mir-315 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 63.0
#=GF NC 61.8
#=GF TC 63.7
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000141;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 12919683
#=GF RT The small RNA profile during Drosophila melanogaster development.
#=GF RA Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B,
#=GF RA Gaasterland T, Meyer J, Tuschl T
#=GF RL Dev Cell. 2003;5:337-350.
#=GF RN [2]
#=GF RM 17989254
#=GF RT Evolution, biogenesis, expression, and target predictions of a
#=GF RT substantially expanded set of Drosophila microRNAs.
#=GF RA Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC
#=GF RL Genome Res. 2007;17:1850-1864.
#=GF RN [3]
#=GF RM 17989255
#=GF RT Systematic discovery and characterization of fly microRNAs using 12
#=GF RT Drosophila genomes.
#=GF RA Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M
#=GF RL Genome Res. 2007;17:1865-1879.
#=GF WK MicroRNA
#=GF SQ 27

URS00006D42C3_7425/2-81    CUCUCUA-UGCUUUUGAUUGUUGCUCAGAAAGCCUCGAUAU----CGAUACUGGCUUUCGGGCAAUAAUCAUAAUCAC-GGGAGAG
URS0000D4F8E1_7427/2-75    CUCUCUA-UGCUUUUGAUUGUUGCUCAGAAAGCCUCGAUAU----CGAUACUGGCUUUCGGGCAAUAAUCAUAAUCAC-G------
URS000075DF51_7460/2-81    CUCUUUA-UGCUUUUGAUUGUUGCUCAGAAAGCCUUGAUUA----UGAUAUUGGCUUUCGGGCAAUAAUCAUAAUCAC-GAAAGGG
URS0000D5566D_6669/11-95   CUCCCAA-UGUUUUUGAUUGUUGCUCAGAAAGCCGUGCCAUUUCACAUUUUUGGCUGACGUCAAAAAAUCACAACUGGCUUUCGAG
URS000013F14E_7237/1-84    CACUUAUCUAUUUUUGAUUGUUGCUCAGAAAGCCCUUAUAAU-UAACCAGUUGGCUUUCGAGCAAUUAUCAAAGCCAA-AUAAGUG
URS000013F14E_7234/1-84    CACUUAUCUAUUUUUGAUUGUUGCUCAGAAAGCCCUUAUAAU-UAACCAGUUGGCUUUCGAGCAAUUAUCAAAGCCAA-AUAAGUG
URS0000360951_7238/1-82    CACUUAUAUAAUUUUGAUUGUUGCUCAGAAAGCCCUUAUUG---UACCAGUUGGCUUUCGAGCAAUAAUUGAAACCAG-AUAAGUG
URS00004B6806_7240/1-84    CACUUAUAUAAUUUUGAUUGUUGCUCAGAAAGCCCUUAUUGU-UUACCAGUUGGCUUUCGAGCAAUAAUUGAAACCAG-AUAAGUG
URS0000497540_7227/1-84    CACUUAUAUAAUUUUGAUUGUUGCUCAGAAAGCCCUCAUUGU-UUACCAGUUGGCUUUCGAGCAAUAAUUGAAACCAG-AUAAGUG
URS0000063319_7220/1-83    CACUUAUAUAAUUUUGAUUGUUGCUCAGAAAGCCCUAUUAUC--UAACAGCUGGCUUUCGAGCAAUAAUUGAAACCAG-AUAAGUG
URS0000179E12_7245/1-84    CACUUAUAUAAUUUUGAUUGUUGCUCAGAAAGCCCUUACUAU-UUAACAGCUGGCUUUCGAGCAAUAAUUGAAACCAG-AUAAGUG
URS00000B681A_7260/1-85    CACUUAUAUAAUUUUGAUUGUUGCUCAGAAAGCCCUCAUUACUUUAUCAGUUGGCUUUCGAGCAAUAAUUGAAACCAA-AUAAGUG
URS00005FBB4A_7217/1-84    CACUUAUAUAAUUUUGAUUGUUGCUCAGAAAGCCCUUAUAAA-UUAUUAGCUGGCUUUCGAGCAAUAAUUGAAACCAA-AUAAGUG
URS0000478414_7230/1-83    CCCUUAUAUAAUUUUGAUUGUUGCUCAGAAAGCCCGUAAUUUAACUUAACAUGGCUUUCGAGUAAUAAUCGAAACCAA-AUAAG--
URS0000133D7F_7222/1-82    CGCUCAUAUAAUUUUGAUUGUUGCUCAGAAAGCCUUUCACU---UGACACUUGGCUUUCGAGUAAUAAUCGAAACCAA-AUAAGCG
URS0000560952_7244/1-82    CGCCUAUAUCAUUUUGAUUGUUGCUCAGAAAGCCCUGCAUU---CAAUACUUGGCUUUCGAGUAAUAAUCGAAACCAA-AUAAGCG
URS0000D519A7_7159/5-88    UUUCUAUAAAAUUUUGAUUGUUGCUCAGAAAGCCGUGCAUUU-GAAACGGGUCGCUUUCGAGCAGUAAUCAAAGUCAA-AUAAAAC
URS0000D5468F_7176/6-89    UUUCUAUAAAAUUUUGAUUGUUGCUCAGAAAGCCGUGCAUUC-GAAACAUUCCGCUUUCGAGCAGUAAUCAGAGUCAA-AUAAAAC
URS000041D77F_7165/1-76    ----UAUAAAAUUUUGAUUGUUGCUCAGAAAGCCGUGUCGAU-UAAGCAAUUCGCUUUCGGGCAGUAAUCAAAGUCAA-AUA----
URS0000D54C69_79327/10-91  GGCUUAUAGAAUUUUGAUUGUUGCUCUGAGAGUUAAUAUAAU-UUCAAUGAUAACUGUCUAACAACCAUCAAAUUU---CAAAGCG
URS000075C6C4_7029/1-65    -----------UUUUGAUUGUUGCUCAGAAAGCCUUUCAUAUAUUGUACGGUGGCUUUCUAGCAAUAAUCAUGACC----------
URS0000759D3B_10224/10-91  CUCUGGCGCCGUUUUGAUUGUUGCUCAGAAAGCCUUAUGCU----UCUGGUCGGCUUUCGGGUAACAAUUAAAAAUAGCGAGAGAG
URS0000A84AA8_7757/1-77    --UUGUUCCCGAUUUGAUUGUUGCUCAGAAAGCCGUGAAUU----GAACGUCGACUUUCGGGCAUCAAUCAAAACGGG-AGGCG--
URS0000D50739_225164/10-92 AUCUUCUCAAAUUUUGAUUGUUGCUCAGAAAGCCGUAAUGU---UUAACUCCGGCGCUCGGGCAACAAUCAACUAAUGAUGGAGGU
URS000075A58C_7070/3-79    UCCUUUU--GCUUUUGAUUGUUGCUCAGAAAGCCGGGUGU------UAGAAAGGCUUUCGGGCAAUAAUCAUUUCCAA-AGAGGAC
URS0000D5471D_6945/10-89   UCCUUCUCAGCUUUUGAUUGUUGCUCAGAAGGCGUGGCAA-----UCUGACAAGCCUUCGAGUGACUAUCAAAUCUUG-UGGAGAC
URS0000798AEF_283909/10-93 GCGUCCACACCUUUUGAUUGUUGCUCAGAAAGCCCUUUGUUU--AUCGAGUUGGCUUUCAAGUGACAAUCAAGUUGUGAAGGAUAG
#=GC SS_cons               <<<<<<<----<<<<<<<-<<<<<<<-<<<<<<<________..________>>>>>>>>>>>>>>->>>>>>>----.>>>>>>>
#=GC RF                    cucuuauauaauUuUGAUUgUUGCuCAGAaAGCcuUuauuuU..uaaaaguUgGCUuUCGaGCAAcAAUCAaAaccAg.auaagag
//
