# STOCKHOLM 1.0
#=GF ID mir-239
#=GF AC RF00713
#=GF DE mir-239 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 49.0
#=GF NC 48.8
#=GF TC 49.0
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000135;
#=GF DR URL; http://www.mirbase.org;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 17174894
#=GF RT Large-scale sequencing reveals 21U-RNAs and additional microRNAs and
#=GF RT endogenous siRNAs in C. elegans.
#=GF RA Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP
#=GF RL Cell. 2006;127:1193-1207.
#=GF RN [2]
#=GF RM 19460142
#=GF RT Dynamic expression of small non-coding RNAs, including novel microRNAs and
#=GF RT piRNAs/21U-RNAs, during Caenorhabditis elegans development.
#=GF RA Kato M, de Lencastre A, Pincus Z, Slack FJ
#=GF RL Genome Biol. 2009;10:R54.
#=GF RN [3]
#=GF RM 20062054
#=GF RT Comprehensive discovery of endogenous Argonaute binding sites in
#=GF RT Caenorhabditis elegans.
#=GF RA Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo
#=GF RA GW
#=GF RL Nat Struct Mol Biol. 2010;17:173-179.
#=GF RN [4]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF CC This family represents the microRNA (miRNA) precursor mir-239 imported
#=GF CC from miRBase.
#=GF WK MicroRNA
#=GF SQ 12

URS0000D5670E_6253/5-72   UGAACUUUGUACUUCGGCUAAGGUGCUGCUCUA--------UGGCGG--CCAGUACCU-UGGCUAGGUGCAACGCUGAA
URS00009EF3B4_6279/19-88  GAAGCUUUGUACUUCGGCUAAGGUGCUGCUACGG------UUACGGG--ACAACACCU-UGGCUAGGUACAAUGCUCAA
URS0000506BCE_6239/11-83  CAAUUUUUGUACUACA-CAAAAGUACUGGUCAUUUAAG--UUGAGGC--UCAGCACUU-UUGUGGUGUGCAAAAAUGGC
URS0000030088_31234/12-82 CAAUUUUUGUACUGCA-CAAAAGCUCUGACUGCUCUG---AUAUGGC--UCAGCACUU-UUGUC-UGUGCAAAAAUGGC
URS0000D4F9B0_6238/14-77  CAAUUUUUGUACUGCA-CAAAAGUACUGACUA--------UUUC-----UCAGCGCUU-UUGUCCAGUGCAAGAAUGGC
URS0000129CFF_6239/11-84  CAAUUUUUGUACUACA-CAUAGGUACUGGACAAUUUUCA-AAAUAU-AUCCAGUGUCU-A-GUCUAGUGCAAACAUUGC
URS0000D54CAC_135651/1-65 -----UUUGUACUACA-CAUAGGUACUGGAAAACUUACCACAGAUU-AUCCAGUGCUU-G-GUCUAGUGCAAGA-----
URS0000D54D4E_6238/24-98  CGAUUUUUGUACUACA-AUUAGGUACUGGACACCAGCAGCGAGUGU-AUCCAGAAUCU-A-UACUAGUACAAAAAUAGC
URS00005BC04C_31234/13-84 CGAUUUUUGUACUACA-CAUAGGUACUGGACACUGAGAU---UUGU-AUCCAGAAUCU-A-UUCUAGUGCAAAAAUUGC
URS0000D516C8_135651/1-66 -----UUUGUACUAAA-CAUAGGUACUGAAAUAAAAUAU-UUUAUUUACUCAGUUCCU-A-GUCUAGUGCAAGGG----
URS00007B7D98_54126/21-92 CCUUGUUUGUACUAGG-CUAAGGAAUUACGAUAUAUUGA----AGCG--AUAAUUCCUGUAGUCCUGUGCGAUCCAGGC
URS00007A39AD_54126/22-93 CCUUGUUUGUACUAGG-CUAAGGAAUUACGUCAUAUUGA----AGCG--UUAAUUCCUCUAGUCCCGUGCAAUCCAGGC
#=GC SS_cons              ::<<<<<<<<<<--<<.<<<<<<<-<<<<<<________.____>>>..->>>->>>>.>>>>>-->>>>>>>>>>:::
#=GC RF                   CaAuuuUUGUACUAga.CuaAGGuACUGcacaauauuaa.uUgagug..uCAGuaCCU.uaGucuaGUGCAAaaaUgGC
//
