# STOCKHOLM 1.0
#=GF ID mir-449
#=GF AC RF00711
#=GF DE mir-449 microRNA precursor family
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 60.4
#=GF NC 60.3
#=GF TC 60.4
#=GF SE Griffiths-Jones SR; Wilkinson A
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 55.00 -Z 2958934 CM SEQDB
#=GF CL CL00087
#=GF DR MIPF; MIPF0000133;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 20403161
#=GF RT Small RNA expression and strain specificity in the rat.
#=GF RA Linsen SE, de Wit E, de Bruijn E, Cuppen E
#=GF RL BMC Genomics. 2010;11:249.
#=GF RN [2]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF CC Family represents the microRNA (miRNA) precursor mir-449 imported from
#=GF CC miRBase [2].
#=GF WK Mir-449_microRNA_precursor_family
#=GF SQ 41

URS000075E1C2_9913/2-88    GACCUGAAUCAGGUAGGCAGUGUA-UUGUUAGCUGGCUGCUUUGG---GUCAAUUCAGCAGCCA-C-AAC-UGC-CCUGCCA-CUUGCUUCUGGAU
URS00007E409C_9925/2-88    GACCUGAAUCAGGUAGGCAGUGUA-UUGUUAGCUGGCUGCUUUGG---GUCAAUUCAGCAGCCA-C-AAC-UGC-CCUGCCA-CUUGCUUCUGGAU
URS00007E4E40_9796/17-103  GACCUGAGUCAGGUAGGCAGUGUG-UUGUUAGCUGGCUGCUUUAG---GUCAAUUCAGCAGCCA-C-AAC-UAC-CCUGCCA-CUUGCUUCUGGAU
URS0000A9278A_9600/2-87    GACCUGAAUCAGGUAGGCAGUGUA-UUGUUAGCUGGCUGCUUU-G---GUCAAGUCAGCAGCCA-C-AAC-UAC-CCUGCCA-CUUGCUUCUGGAU
URS000075B9B1_9606/2-87    GACCUGAAUCAGGUAGGCAGUGUA-UUGUUAGCUGGCUGC-UUGG---GUCAAGUCAGCAGCCA-C-AAC-UAC-CCUGCCA-CUUGCUUCUGGAU
URS000075E946_9598/1-86    GACCUGAAUCAGGUAGGCAGUGUA-UUGUUAGCUGGCUGC-UUGG---GUCAAGUCAGCAGCCA-C-AAC-UAC-CCUGCCA-CUUGCUUCUGGAU
URS000075C10B_9544/2-87    GACCUGAAUCAGGUAGGCAGUGUA-UUGUUAGCUGGCUGC-UUGA---GUCAAGUCAGCAGCCA-C-AAC-UAC-CCUGCCA-CUUGCUUCUGGAU
URS00007E42F3_9615/19-105  GACCUGAGUCAGGUAGGCAGUGUA-UUGUUAGCUGGCUGCUUUGG---GUCAAUCUGGCAGCCA-C-CAC-UAC-CCUGCCA-CUUGCUUCUGGAC
URS000075E95B_10090/1-80   ----AGACUCGGGUAGGCAGUG---UUGUUAGCUGGCUGCGUUGG---GUCAGGCCAGCAGCCA-C-AGC-UAC-CCUGCCA-CUUCCUUCUGGC-
URS000075D8A3_9258/8-94    UACCUGGGUCAAGUAGGCAGUGUG-AUGUUUGCUGGCUGCUUUGA---AUCGAUUCAGCAGCCA-C-CGU-UAC-UCUGCCA-CUUGCUACUAGGC
URS000075C650_9031/1-83    --CCUGUGGCUGGAAGGCAGUGUG-CUGUUAGC-GGCUGCUG-UG---CUGAAUGGAGCAGUCA-C-UAC-CAC-ACUGCCA-CCUGCUGCAGGGA
URS000075A0B4_8364/1-86    -ACCUGCUUUGGGUAGGCAGUGUA-GUUUUAGCUGGCUGC-UUGCUA-UUAACUCCAGCAGUCG-C-UAA-UAC-UCUGCCA-CCGGCAGCAGGG-
URS00007E3CB3_13616/1-59   --------------GGGCAGUGUA-UUGUUAGUUAGCUGUUUUUC-------AUAAGUGCAGCAACUGCA-UAC-ACUUCCAU-------------
URS000065DAF1_10116/2-89   UGUGUGCGAUGGGUUGGCAGUGUA-UUGUUAGCUGGUUGAGUAUG-------UAAAAGGCACCAGCUAACAUGCAACUGCUCUCCUAUUGCACAUA
URS000075BAEF_9258/15-101  UGUGUGCGAUAGUUUGGCAGUGU--UUGUUAGCUGGUUGAAUAUU-------UAAAUGGCACCAGCUGACAGACAGCUGCUUUCCUAUUGCAUGUA
URS000064C3C7_10090/2-89   UGUGUGUGAUGGCUUGGCAGUGUA-UUGUUAGCUGGUUGAGUAUG-------UGAGCGGCACCAGCUAACAUGCGACUGCUCUCCUAUUGCACACA
URS0000D552C0_8267/4-88    GGUGGGUGGCUGGAAGGCAGUGUC-UUGUUAGCUGGUUGAUUGUG-------UGAGUG---CCAGCUUACCUGCUGCUGCCCUCCAACUGUCCACA
URS000075D699_13616/1-79   ----UGUGAUGGGAUGGCAGUGUA-UUGUUAGCUGGUUGACUAUC-------UGAACG-UGCCAGCUAACAUGCAACUGCUAUCCCAUUGCA----
URS00006A0D74_9606/2-89    UGUGUGUGAUGAGCUGGCAGUGUA-UUGUUAGCUGGUUGAAUAUG-------UGAAUGGCAUCGGCUAACAUGCAACUGCUGUCUUAUUGCAUAUA
URS000075F01E_9598/1-88    UGUGUGUGAUGAGCUGGCAGUGUA-UUGUUAGCUCGUUGAAUAUG-------UGAAUGGCAUCGGCUAACAUGCAACUGCUGUCUUAUUGCAUAUA
URS00006EF887_9600/2-89    UGUGUGUGAUGAGCUGGCAGUGUA-UUGUUAGCUGGUUGAAUAUG-------UGAAUGGCAUCGGCUAACGUGCAACUGCUGUCUUAUUGCAUAUA
URS000065F3F3_9544/2-89    UGUGUGUGAUGAGCUGGCAGUGUA-UUGUUAGCUGGUUGAAUAUG-------UGAAUGGCAUCAGCUAACAUGCAACUGCUGUCUUAUUGCAUAUA
URS0000759A91_9913/1-86    --UGUGUGAUGGGUUGGCAGUGUA-UUGUUAGCUGGUUGAAUAUG-------UGAGUGCCAUCAGCUAACAUGCAACUGCUAUCUUAUUGCAUGUA
URS0000759A91_9925/1-86    --UGUGUGAUGGGUUGGCAGUGUA-UUGUUAGCUGGUUGAAUAUG-------UGAGUGCCAUCAGCUAACAUGCAACUGCUAUCUUAUUGCAUGUA
URS0000655308_9615/2-89    CGUGUGUGAUGGGUUGGCAGUGUA-UUGUUAGCUGGUUGAAUAUA-------UGAAUGGCAUCAGCUAACAUGCAACUGCUAUCUUAUUGCAUAUA
URS000075E6E9_9796/1-60    --------------UGGCAGUGUA-UUGUUAGCUGGUUGAAUAUA-------UGAAUGGCAUCAGCUAACAAGCAACUGCUA--------------
URS00007E49BA_28377/1-86   --UGUGUGGUGGAAUGGCAGUGUA-UUGUUAGCUGGAUGAGUAUC-------UCAAUGCCCCCAGCUGACAUUCAGCUGCCAAUCUACGGCACAUA
URS0000D510E1_8665/3-90    UGUGUGUAGUGGAAUGGCAGUGUA-CUGUUAGCUGGAUGGAUAUC-------CAGAUGGCACCAGCUGACAUUCAGCUGCCAGCCUACGGCACAUA
URS000075CB5A_8364/2-87    UGUGUUUAGAAGGAAGGCAGUGUA-AUGUUAGCUGGUUGGAAAA--------UAGCAGACACUGGUUAACUUACACCUGCCCCCCUUCUUUACAU-
URS000075D756_9031/2-85    UGUGUGCGGUGGGGUGGCAGUGUA--UGUUAGCUGGUUGAAACUC-------U---UGACAUCAGCUAACACGCAGUUGCUAACCUGCUCCACAUA
URS00007E3B5A_28377/1-75   -----GUGAUGGUUUGGCAGUGUA-CUCUUAGUUAGCUGU-UGUA-------UAUAUUACAGCAACUAA-AUACA-CUUCCAUAUUAUUGC-----
URS0000D51195_8665/1-83    ---GUGGGAUGGUUUGGCAGUGUACCUCUUAGUUAGCUGU-UGUA-------CAUAUUCCAGCAACUAA-GUACA-CUUCCAUAUUAUUGCACAAU
URS000075D49E_9606/4-87    GGGAUGUGUCAGGUAGGCAGUGUA-UUGCUAGC-GGCUGUUAAUG-------AUUUUAACAGUUGCUAGU-UGC-ACU-CCUCUCUGUUGCAUUCA
URS000075C69F_9598/7-90    GGGAUGUGUCAGGUAGGCAGUGUA-UUGCUAGC-GGCUGUUAAUA-------AUUUUAACAGUUGCUAGU-UGC-ACU-CCUCUCUGUUGCAUUCA
URS000075C4EF_9913/9-97    UGAAUGUGUCAGGUAGGCAGUGCA-UCUCUAGCUGGCUGUUAAAAU---UUCUUUUUAACAGUUGCUAGU-UGC-ACU-CCCCUCUGUUGCAUUCA
URS00007E4FF5_9925/6-94    UGAAUGUGUCAGGUAGGCAGUGCA-UCUCUAGCUGGCUGUUAAUAU---UUCAUUUUAACAGUUGCUAGU-UGC-ACU-CCCCGCUGUUGCAUUCA
URS000075D15C_10090/12-100 UGGGUGUGUCAGGCAGGCAGUGCA-UUGCUAGCUGGCUGUUAGAAC---UUUAUCCCAACAGUUGCUAGC-UGC-ACU-ACCCUCUGCUGCACUCA
URS000075C991_10116/6-94   UGGGUGUGUCAGACAGGCAGUGCA-UUGCUAGCUGGCUGUUAGAAC---UUCGUCCCAACAGUGGCUAGC-UGC-ACU-ACCCUCUGCUGCACUUA
URS00007E4778_28377/1-90   -GACUGUGUCGCUUUGGCAGUGCA-CUACUAGCUGGCUGUUGAGAUAUAUUCAUUUUUACAGUGGUUAGU-UGC-ACU-CCACACUGAUGCAGUC-
URS000075DEDF_8364/2-92    AGUUUGGACCAAUGAGGCAGUGCACUUGCUAGCUGGCUGUUGUGUU--CUGGAAGCUUACAGCUGCUAGC-UGC-ACU-CCACAUUGUUUCAUUCU
URS000075DA62_9258/8-94    AGAAUGUGCCGGUUUGGCAGUGCU-UUGCUAGCUGGCUGUUCAAUA-----AAUGAUUCCAGCAGCUGGU-UGC-ACG-CCCCACUGUCACAAUCC
#=GC SS_cons               <<<<<<<<<<<<<-<<<<<<<<<<.--<<<<<<<<<<----<<<_.......___>>>-->>>>>>>>>>.>>>.>>>>>>>->>>>>>>>>>>>>
#=GC RF                    ugcguGcggcagguuGGCAGuGca.UUguuAGCuGgcUGuucaua.......auuaugacgcCaGCUaac.ugC.aCUGCCauccugccgCacgca
//
