INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-375 ACC RF00700 DESC microRNA mir-375 STATES 205 NODES 49 CLEN 67 W 121 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 22:12:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/14.9/microrna/batch4_searches/MIPF0000114__mir-375/RF00700/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 47 EFFN 6.577820 CKSUM 2337105386 NULL 0.000 0.000 0.000 0.000 GA 46.70 TC 46.70 NC 46.60 EFP7GF -13.1754 0.71920 ECMLC 0.68541 -4.96848 2.90986 1600000 265659 0.004517 ECMGC 0.41072 -17.14058 -4.03406 1600000 87083 0.004593 ECMLI 0.68943 -3.55309 4.06515 1600000 229186 0.005236 ECMGI 0.46258 -10.67437 0.19729 1600000 61114 0.006545 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 121 184 -8.010 -9.256 -0.177 -3.181 IL 1 1 2 1 4 1 27 122 185 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 28 122 185 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 97 - c - - MR 3 2 3 5 5 4 28 121 184 -8.013 -0.098 -7.829 -4.176 -8.932 -0.184 0.656 -1.783 0.326 D 4 2 3 5 5 0 23 119 182 -6.270 -1.065 -3.896 -5.327 -1.262 IR 5 5 3 5 5 2 27 121 184 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 96 c g - - MP 6 5 3 10 6 5 28 120 183 -9.594 -9.534 -0.015 -8.310 -8.590 -8.985 -0.728 -1.924 -0.888 1.329 -1.901 -2.764 1.863 -2.261 -1.430 1.210 -1.799 -0.351 1.187 -2.053 0.142 -1.181 ML 7 5 3 10 6 1 25 118 181 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 2 24 118 181 -7.601 -6.330 -1.783 -6.309 -0.653 -4.522 0.826 -0.850 -0.230 -0.286 D 9 5 3 10 6 0 21 115 178 -10.016 -8.714 -4.511 -5.193 -5.211 -0.154 IL 10 10 5 10 6 2 26 119 182 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 2 26 119 182 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 95 c g - - MP 12 11 6 16 6 4 26 118 181 -9.605 -9.544 -0.015 -8.321 -8.601 -8.996 -1.769 -1.940 -1.968 1.397 -1.555 -1.308 1.848 -2.306 -2.026 0.971 -2.590 0.412 1.305 -1.304 -0.189 -0.848 ML 13 11 6 16 6 1 24 117 180 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 23 116 179 -7.483 -6.212 -2.121 -6.190 -0.535 -4.404 1.037 -0.905 -0.650 -0.365 D 15 11 6 16 6 0 21 114 177 -10.016 -8.714 -4.511 -5.193 -1.640 -0.726 IL 16 16 5 16 6 2 24 117 180 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 2 24 117 180 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 94 U A - - MP 18 17 6 22 4 2 24 116 179 -8.004 -8.211 -0.303 -2.457 -5.016 -5.099 -4.702 -1.355 1.261 -5.092 1.183 -4.185 -4.745 -1.248 -5.031 -3.215 3.259 -5.065 -1.066 -3.597 ML 19 17 6 22 4 1 23 116 178 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 4 1 21 115 178 -5.753 -4.782 -2.650 -0.348 1.291 -1.235 -0.972 -0.692 D 21 17 6 22 4 0 21 114 177 -5.007 -4.688 -2.704 -0.365 IL 22 22 5 22 4 1 24 116 179 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 23 23 6 23 3 1 23 116 179 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 4 - u - - - ML 24 23 6 26 3 1 22 114 177 -9.056 -0.011 -7.374 -0.286 0.254 -0.342 0.261 D 25 23 6 26 3 0 20 113 176 -7.665 -0.146 -3.448 IL 26 26 3 26 3 1 22 115 178 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 93 - U - - MR 27 26 3 29 5 1 21 113 176 -8.143 -0.089 -7.958 -4.306 -9.062 -1.322 -1.095 -0.677 1.326 D 28 26 3 29 5 0 17 112 175 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 20 113 176 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 92 a u - - MP 30 29 3 34 6 2 21 112 175 -9.651 -9.591 -0.014 -8.367 -8.647 -9.042 -4.178 -3.226 -4.312 2.922 -5.044 -5.699 -0.985 -0.436 -4.163 0.965 -4.728 2.047 -1.164 -4.780 -2.779 -3.166 ML 31 29 3 34 6 1 18 111 174 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 17 110 173 -7.601 -6.330 -1.783 -6.309 -0.653 -4.522 -0.275 -0.550 -0.905 0.968 D 33 29 3 34 6 0 14 108 171 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 19 112 175 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 19 112 174 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 91 C G - - MP 36 35 6 40 6 2 19 110 173 -9.662 -9.601 -0.014 -8.377 -8.657 -9.052 -6.048 -6.083 -5.625 -2.260 -4.236 -5.931 3.800 -5.192 -5.765 -2.124 -1.742 -4.107 -0.830 -6.095 -1.036 -4.592 ML 37 35 6 40 6 1 17 109 172 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 16 109 171 -7.483 -6.212 -2.121 -6.190 -0.535 -4.404 -0.038 -0.939 0.794 -0.375 D 39 35 6 40 6 0 14 107 170 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 18 110 173 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 18 110 173 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 90 g c - - MP 42 41 6 46 4 2 17 108 171 -8.103 -8.310 -0.581 -1.624 -0.665 -1.473 -2.580 0.906 -2.698 -1.185 0.793 -2.971 -2.704 2.514 -3.223 -0.512 1.489 -2.664 -0.776 -1.778 ML 43 41 6 46 4 1 17 108 171 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 1 15 107 170 -5.367 -4.396 -2.264 -0.474 -0.145 0.591 -0.855 0.052 D 45 41 6 46 4 0 14 106 169 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 1 18 109 172 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 1 18 108 171 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - u - - - ML 48 47 6 50 5 1 18 107 170 -7.605 -0.027 -7.421 -7.633 -8.524 0.042 -0.085 -1.342 0.707 D 49 47 6 50 5 0 13 106 169 -7.234 -0.133 -6.496 -4.870 -4.783 IL 50 50 3 50 5 1 14 107 170 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 89 C G - - MP 51 50 3 55 6 2 19 106 169 -9.696 -9.635 -0.014 -8.412 -8.692 -9.087 -5.265 -5.278 -4.922 -1.368 -3.518 -5.310 3.154 -4.339 -4.942 -1.220 -5.225 -3.231 1.080 -5.290 1.869 -3.745 ML 52 50 3 55 6 1 12 104 167 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 12 103 166 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 8 99 162 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 14 105 168 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 14 105 168 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 88 G C - - MP 57 56 6 61 6 2 18 104 167 -9.696 -9.635 -0.014 -8.412 -8.692 -9.087 -5.238 -0.367 -5.247 -0.149 -6.343 -5.177 -1.401 -5.783 -4.955 3.600 -5.242 0.197 -1.662 -4.833 -3.442 -4.164 ML 58 56 6 61 6 1 12 102 165 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 11 101 164 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 8 98 161 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 13 103 166 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 13 103 166 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 87 A U - - MP 63 62 6 67 6 2 18 102 165 -9.696 -9.635 -0.014 -8.412 -8.692 -9.087 -4.786 -3.621 -4.893 3.510 -6.138 -6.994 -1.867 -1.699 -4.644 -0.039 -5.266 1.258 -2.003 -5.773 -3.712 -3.636 ML 64 62 6 67 6 1 11 100 163 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 11 99 162 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 7 96 159 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 13 101 164 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 13 101 164 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 86 G C - - MP 69 68 6 73 6 2 16 100 163 -9.696 -9.635 -0.014 -8.412 -8.692 -9.087 -5.919 -3.814 -6.071 -0.700 -6.888 -5.236 -1.901 -6.571 -5.243 3.766 -5.477 -1.598 -2.215 -0.564 -3.996 -5.021 ML 70 68 6 73 6 1 11 98 161 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 10 98 161 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 7 95 157 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 12 99 162 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 12 99 162 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 85 C G - - MP 75 74 6 79 6 2 15 98 161 -9.696 -9.635 -0.014 -8.412 -8.692 -9.087 -7.034 -7.150 -6.243 -3.352 -4.632 -6.331 3.917 -5.750 -6.525 -3.307 -6.356 -5.285 -1.527 -6.947 -2.556 -5.328 ML 76 74 6 79 6 1 10 96 159 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 9 96 159 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 7 93 156 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 11 97 160 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 11 97 160 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 84 C G - - MP 81 80 6 85 4 2 13 96 159 -8.162 -8.369 -0.023 -6.783 -5.804 -5.938 -5.251 -2.076 -3.683 -5.480 3.702 -4.571 -5.324 -1.977 -5.496 -4.061 -0.289 -5.718 0.369 -4.120 ML 82 80 6 85 4 1 9 95 158 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 8 94 157 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 7 93 156 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 11 96 159 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 11 95 158 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - c - - - ML 87 86 6 89 3 1 12 94 157 -9.119 -0.009 -7.773 0.172 0.515 -0.938 -0.115 D 88 86 6 89 3 0 6 92 155 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 10 94 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - c - - - ML 90 89 3 92 3 1 11 93 156 -9.119 -0.009 -7.773 0.156 0.375 -0.378 -0.287 D 91 89 3 92 3 0 6 91 154 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 9 93 156 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - a - - - ML 93 92 3 95 3 1 10 92 155 -9.456 -0.009 -7.774 0.800 -1.219 -0.167 -0.091 D 94 92 3 95 3 0 5 90 153 -5.620 -0.734 -1.403 IL 95 95 3 95 3 1 8 92 155 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 83 - C - - MR 96 95 3 98 3 1 9 91 154 -9.456 -0.009 -7.774 -2.284 1.468 -3.242 -0.115 D 97 95 3 98 3 0 4 89 152 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 8 91 154 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 82 - U - - MR 99 98 3 101 3 1 9 90 153 -9.456 -0.009 -7.774 -2.166 -1.787 -2.227 1.711 D 100 98 3 101 3 0 3 88 151 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 7 90 153 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 81 - U - - MR 102 101 3 104 5 1 8 89 152 -8.143 -0.019 -7.958 -8.170 -9.062 -3.577 -3.261 -4.366 1.912 D 103 101 3 104 5 0 3 87 150 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 6 89 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 80 C G - - MP 105 104 3 109 6 2 7 88 151 -9.696 -9.635 -0.014 -8.412 -8.692 -9.087 -5.803 -5.862 -5.391 -2.053 -3.984 -5.707 3.719 -4.885 -5.489 -1.931 -0.359 -3.920 -0.555 -5.829 -0.903 -4.317 ML 106 104 3 109 6 1 4 86 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 3 86 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 1 84 146 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 5 87 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 5 87 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 79 G C - - MP 111 110 6 115 4 2 5 86 149 -2.214 -8.369 -0.373 -6.783 -6.832 -4.147 -7.535 -1.326 -8.043 -5.478 -2.892 -7.654 -5.499 3.898 -5.740 -1.979 -3.253 -5.764 -5.111 -6.385 ML 112 110 6 115 4 1 3 85 148 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 2 84 147 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 1 83 146 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 3 85 148 -1.617 -4.445 -1.527 -1.831 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 4 85 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - c - - - ML 117 116 6 119 3 1 4 84 146 -9.294 -0.010 -7.612 0.028 0.534 -1.661 0.282 D 118 116 6 119 3 0 1 82 145 -6.867 -0.265 -2.650 IL 119 119 3 119 3 1 2 84 147 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 78 - U - - MR 120 119 3 122 5 1 4 83 145 -8.143 -0.019 -7.958 -8.170 -9.062 -3.577 -3.261 -4.366 1.912 D 121 119 3 122 5 0 0 81 144 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 2 83 146 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 77 a u - - MP 123 122 3 127 6 2 5 82 144 -9.696 -9.635 -0.014 -8.412 -8.692 -9.087 -4.599 -3.475 -4.758 2.924 -5.903 -6.665 -1.739 -4.896 -4.483 0.113 -5.096 2.107 -1.851 -5.516 -3.540 1.023 ML 124 122 3 127 6 1 1 80 143 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 79 142 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 76 139 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 81 144 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 2 81 144 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 76 C G - - MP 129 128 6 133 6 2 5 80 143 -9.696 -9.635 -0.014 -8.412 -8.692 -9.087 -6.092 -6.241 -5.486 -2.393 -3.899 -5.680 3.795 -4.830 -5.597 -2.303 -5.705 -4.393 -0.563 -5.995 -0.457 -4.393 ML 130 128 6 133 6 1 1 78 141 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 77 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 74 137 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 79 142 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 79 142 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 75 A U - - MP 135 134 6 139 6 2 3 78 141 -9.696 -9.635 -0.041 -8.412 -5.566 -9.087 -7.504 -6.377 -5.689 3.953 -8.288 -9.425 -4.080 -3.425 -7.321 -2.913 -7.885 -3.561 -4.508 -8.535 -5.970 -5.245 ML 136 134 6 139 6 1 1 76 139 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 76 139 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 74 136 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 77 140 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 77 140 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 26 74 A U - - MP 141 140 6 145 4 2 2 76 139 -3.657 -8.323 -0.365 -2.825 -5.036 -3.729 -5.119 3.689 -6.981 -7.986 -2.489 -5.160 -4.815 -0.283 -5.467 0.642 -2.537 -6.357 -4.355 -3.803 ML 142 140 6 145 4 1 1 75 138 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 74 137 -5.268 -4.297 -1.013 -1.225 -0.096 -0.449 -0.706 0.782 D 144 140 6 145 4 0 0 73 136 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 76 139 -1.238 -3.684 -1.046 -6.169 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 75 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - u - - - ML 147 146 6 149 3 1 1 73 136 -9.272 -0.010 -7.590 0.459 -0.984 -0.670 0.577 D 148 146 6 149 3 0 0 72 135 -6.969 -0.245 -2.752 IL 149 149 3 149 3 1 1 74 137 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 73 - U - - MR 150 149 3 152 5 1 1 72 135 -8.143 -0.019 -7.958 -8.170 -9.062 -3.577 -3.261 -4.366 1.912 D 151 149 3 152 5 0 0 71 134 -5.352 -0.707 -2.978 -4.409 -2.404 IR 152 152 3 152 5 1 1 73 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 30 72 a u - - MP 153 152 3 157 6 2 2 71 134 -9.696 -9.635 -0.014 -8.412 -8.692 -9.087 -2.489 -2.422 -0.677 2.070 -2.611 -3.459 1.576 -2.947 -2.724 1.478 -3.260 0.486 0.950 -2.746 -0.651 -1.809 ML 154 152 3 157 6 1 1 70 133 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 3 157 6 1 1 69 132 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 3 157 6 0 0 67 130 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 71 134 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 71 134 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 31 71 c g - - MP 159 158 6 163 4 2 2 69 132 -8.162 -8.369 -0.023 -6.783 -0.461 -3.028 -3.067 0.318 -2.652 -3.884 2.833 -3.148 -3.089 0.354 -1.536 -1.331 1.661 -3.228 -0.539 -2.146 ML 160 158 6 163 4 1 1 69 131 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 67 130 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 66 129 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 69 132 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 69 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - c - - - ML 165 164 6 167 3 1 1 67 130 -9.119 -0.045 -5.129 -0.270 0.481 -0.980 0.342 D 166 164 6 167 3 0 0 64 127 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 68 131 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - u - - - ML 168 167 3 170 3 1 1 67 130 -9.084 -0.030 -5.722 -0.946 -0.861 -0.042 0.970 D 169 167 3 170 3 0 0 62 125 -6.753 -2.266 -0.353 IL 170 170 3 170 3 1 1 67 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 34 - G - - - ML 171 170 3 173 3 1 1 66 129 -9.063 -0.355 -2.210 -0.534 -1.806 1.082 -0.141 D 172 170 3 173 3 0 0 60 123 -7.006 -2.519 -0.290 IL 173 173 3 173 3 1 1 67 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - a - - - ML 174 173 3 176 3 1 1 65 128 -1.323 -1.071 -3.006 0.726 -0.298 -0.708 -0.120 D 175 173 3 176 3 0 0 51 110 -8.751 -0.319 -2.351 IL 176 176 3 176 3 1 1 68 131 -0.422 -2.016 -7.251 0.000 0.000 0.000 0.000 [ MATL 39 ] 51 - a - - - ML 177 176 3 179 3 1 1 50 99 -8.944 -0.010 -7.598 0.784 -0.902 -0.393 -0.028 D 178 176 3 179 3 0 0 48 98 -7.915 -0.957 -1.057 IL 179 179 3 179 3 1 1 51 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 52 - u - - - ML 180 179 3 182 3 1 1 49 98 -9.052 -0.010 -7.706 -0.093 0.132 -0.528 0.349 D 181 179 3 182 3 0 0 47 97 -7.124 -0.637 -1.516 IL 182 182 3 182 3 1 1 50 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 53 - a - - - ML 183 182 3 185 3 1 1 48 97 -9.119 -0.009 -7.773 0.124 0.035 -0.259 0.070 D 184 182 3 185 3 0 0 46 95 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 49 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 54 - U - - - ML 186 185 3 188 3 1 1 47 96 -9.119 -0.030 -5.717 -1.442 -0.562 -1.326 1.354 D 187 185 3 188 3 0 0 45 94 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 48 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 55 - g - - - ML 189 188 3 191 3 1 1 46 95 -9.098 -0.009 -7.752 0.227 -0.672 0.512 -0.366 D 190 188 3 191 3 0 0 44 93 -6.549 -1.094 -0.941 IL 191 191 3 191 3 1 1 47 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 56 - A - - - ML 192 191 3 194 3 1 1 45 94 -9.119 -0.009 -7.773 1.103 -0.644 -0.772 -0.674 D 193 191 3 194 3 0 0 43 92 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 46 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 57 - A - - - ML 195 194 3 197 3 1 1 44 93 -9.119 -0.722 -1.352 1.142 -1.300 -0.284 -0.824 D 196 194 3 197 3 0 0 42 91 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 46 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 58 - a - - - ML 198 197 3 200 3 1 1 44 93 -0.755 -1.515 -4.117 0.295 -0.007 -0.465 0.074 D 199 197 3 200 3 0 0 39 88 -3.116 -0.766 -1.753 IL 200 200 3 200 3 1 1 44 94 -0.538 -2.084 -3.726 0.000 0.000 0.000 0.000 [ MATL 47 ] 70 - c - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -0.096 0.452 -0.902 0.216 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-375 ACC RF00700 DESC microRNA mir-375 LENG 67 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 22:12:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/14.9/microrna/batch4_searches/MIPF0000114__mir-375/RF00700/CM NSEQ 47 EFFN 11.156189 CKSUM 2337105386 STATS LOCAL MSV -7.9581 0.71920 STATS LOCAL VITERBI -8.9901 0.71920 STATS LOCAL FORWARD -4.1595 0.71920 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.59461 1.37423 1.37026 1.23809 1.38629 1.38629 1.38629 1.38629 0.14589 4.95782 2.05009 1.46634 0.26236 0.00000 * 1 1.36634 1.28527 1.44070 1.46264 1 c - - < 1.38629 1.38629 1.38629 1.38629 0.01613 4.82805 4.82805 1.46634 0.26236 2.00101 0.14525 2 1.54408 1.19948 1.47273 1.36320 2 c - - < 1.38629 1.38629 1.38629 1.38629 0.01591 4.84193 4.84193 1.46634 0.26236 2.92147 0.05536 3 4.16219 1.28509 4.06951 0.37003 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.21932 4.84193 1.66576 1.46634 0.26236 2.92147 0.05536 4 1.69893 1.13384 1.59983 1.22624 4 c - - - 1.38629 1.38629 1.38629 1.38629 0.01946 4.64207 4.64207 1.46634 0.26236 0.27063 1.43927 5 0.61578 2.72207 0.97535 4.07568 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.01499 4.90110 4.90110 1.46634 0.26236 1.36194 0.29594 6 4.46163 0.13243 3.15205 2.66316 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.01479 4.91424 4.91424 1.46634 0.26236 2.20465 0.11686 7 1.74007 2.11727 0.73286 1.49789 7 g - - < 1.38629 1.38629 1.38629 1.38629 0.42603 4.91424 1.08010 1.46634 0.26236 2.20465 0.11686 8 1.37289 1.41866 2.52434 0.85690 8 u - - - 1.38629 1.38629 1.38629 1.38629 0.02223 4.51044 4.51044 1.46634 0.26236 0.03751 3.30176 9 4.13748 0.52116 3.98058 0.99013 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 10 2.38425 4.26975 0.13016 4.14152 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 11 0.27937 3.49884 1.61039 4.29028 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 12 3.72440 4.67661 0.10076 2.77406 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 13 5.23763 0.02839 5.24506 4.05108 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 14 4.42699 0.15252 4.33833 2.15026 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 15 1.27438 0.94554 2.11080 1.55690 15 c - - - 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 16 1.29627 1.04049 1.64046 1.71882 16 c - - - 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 17 0.77944 2.41457 1.48297 1.49180 17 a - - - 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 18 4.42477 0.19074 2.42539 2.61413 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 19 3.91023 4.98634 0.03427 4.98768 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.15973 1.96188 4.95782 0.51430 0.91110 1.09861 0.40547 20 1.39064 0.92724 2.86307 1.20950 22 c - - - 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 21 0.67057 4.68985 1.11684 1.88333 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 22 4.56258 0.10309 4.47369 2.57558 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 23 0.01819 5.00560 4.90364 5.54458 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04832 4.95782 3.21540 1.46634 0.26236 1.09861 0.40547 24 0.17108 4.73578 1.99847 4.34851 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.26364 2.44258 1.93231 0.75194 0.63762 0.30025 1.34952 25 1.03815 2.22608 1.89288 0.94855 29 u - - - 1.38629 1.38629 1.38629 1.38629 0.01635 4.81511 4.81511 1.46634 0.26236 0.09567 2.39435 26 0.98969 1.58033 1.32786 1.84924 30 a - - < 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 27 2.20394 0.56756 2.41658 1.45456 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 28 1.65312 0.97934 2.13473 1.15609 32 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04143 4.95782 3.39458 1.46634 0.26236 1.09861 0.40547 29 2.40638 2.10401 1.35567 0.63465 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03048 4.93093 3.78088 1.46634 0.26236 1.91312 0.15972 30 1.91246 3.02305 0.54214 1.50450 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.27909 4.91523 1.44310 1.46634 0.26236 2.18971 0.11873 31 0.83330 1.57711 1.93159 1.54225 35 a - - _ 1.38629 1.38629 1.38629 1.38629 0.90112 0.79500 1.94979 1.59448 0.22692 0.15532 1.93891 32 0.79009 2.11450 1.66370 1.44364 51 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01619 4.82467 4.82467 1.46634 0.26236 0.58048 0.82013 33 1.50842 1.24455 1.75513 1.14639 52 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01491 4.90639 4.90639 1.46634 0.26236 0.21989 1.62254 34 1.32302 1.31149 1.54297 1.38427 53 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 35 2.85593 1.82223 2.39568 0.37147 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03020 4.95782 3.78438 1.46634 0.26236 1.09861 0.40547 36 1.23535 1.88030 0.95771 1.75475 55 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01438 4.94200 4.94200 1.46634 0.26236 0.48156 0.96185 37 0.55238 1.85180 1.97867 2.04629 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 38 0.52282 2.44931 1.57717 2.16941 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.47433 4.95782 0.99245 1.46634 0.26236 1.09861 0.40547 39 1.17795 1.33989 1.71911 1.38235 58 a - - _ 1.38629 1.38629 1.38629 1.38629 0.80720 0.71169 2.76341 1.58026 0.23057 0.36614 1.18223 40 1.50677 0.98761 2.08226 1.26847 70 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01642 4.81046 4.81046 1.46634 0.26236 0.09312 2.42010 41 1.32009 2.93256 0.48702 2.73066 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 42 2.04932 1.75273 1.29965 0.85508 72 u - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 43 4.52772 4.24961 5.08876 0.03174 73 U - - - 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 44 4.19986 3.21273 4.29832 0.07132 74 U - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 45 5.89366 5.37128 5.60432 0.01115 75 U - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 46 3.40374 4.62337 0.05767 4.34547 76 G - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 47 4.50993 3.25249 4.47048 0.06307 77 U - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 48 4.52772 4.24961 5.08876 0.03174 78 U - - - 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 49 5.07535 0.04249 4.90372 3.57807 79 C - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 50 3.30314 4.44833 0.06574 4.18901 80 G - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 51 4.52772 4.24961 5.08876 0.03174 81 U - - - 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 52 3.34704 2.86786 3.07597 0.14868 82 U - - - 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 53 3.50116 0.31197 4.19264 1.50180 83 C - - - 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 54 3.27393 4.46917 0.06663 4.19002 84 G - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 55 4.27414 5.36403 0.02502 5.09897 85 G - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 56 4.70574 0.05446 4.53674 3.40362 86 C - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 57 4.40328 3.25120 4.39077 0.06545 87 U - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 58 4.25762 0.14889 4.07418 2.23333 88 C - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 59 2.09673 4.07827 0.17590 3.83961 89 G - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 60 1.42669 0.69438 2.22673 1.87973 90 c - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 61 3.26978 4.27388 0.07325 3.97975 91 G - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 62 3.84041 2.44576 3.93388 0.13664 92 U - - > 1.38629 1.38629 1.38629 1.38629 0.01416 4.95782 4.95782 1.46634 0.26236 1.09861 0.40547 63 2.78001 2.31870 1.84709 0.38292 93 U - - - 1.38629 1.38629 1.38629 1.38629 0.04156 4.95782 3.39089 1.46634 0.26236 1.09861 0.40547 64 0.17092 4.07389 2.14164 3.78827 94 A - - > 1.38629 1.38629 1.38629 1.38629 0.05728 4.93080 3.02727 1.46634 0.26236 1.91573 0.15927 65 1.54674 1.70384 1.19856 1.19254 95 u - - > 1.38629 1.38629 1.38629 1.38629 0.01518 4.88870 4.88870 1.46634 0.26236 2.52584 0.08337 66 1.48776 1.72822 1.02025 1.44386 96 g - - > 1.38629 1.38629 1.38629 1.38629 0.05111 4.88870 3.16307 1.46634 0.26236 2.52584 0.08337 67 1.56965 0.83910 2.98169 1.17417 97 c - - : 1.38629 1.38629 1.38629 1.38629 0.00789 4.84549 * 1.46634 0.26236 0.00000 * //