# STOCKHOLM 1.0
#=GF ID mir-146
#=GF AC RF00691
#=GF DE mir-146 microRNA precursor family
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 50.0
#=GF NC 48.9
#=GF TC 50.0
#=GF SE miRBase; Wilkinson A
#=GF SS Predicted; WAR; Wilkinson A
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000103;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 12007417
#=GF RT Identification of tissue-specific microRNAs from mouse.
#=GF RA Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T
#=GF RL Curr Biol. 2002;12:735-739.
#=GF RN [2]
#=GF RM 17604727
#=GF RT A mammalian microRNA expression atlas based on small RNA library
#=GF RT sequencing.
#=GF RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
#=GF RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
#=GF RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
#=GF RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
#=GF RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
#=GF RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
#=GF RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
#=GF RA JJ, Sander C, Zavolan M, Tuschl T
#=GF RL Cell. 2007;129:1401-1414.
#=GF RN [3]
#=GF RM 15800047
#=GF RT Kaposi's sarcoma-associated herpesvirus expresses an array of viral
#=GF RT microRNAs in latently infected cells.
#=GF RA Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR
#=GF RL Proc Natl Acad Sci U S A. 2005;102:5570-5575.
#=GF RN [4]
#=GF RM 17604727
#=GF RT A mammalian microRNA expression atlas based on small RNA library
#=GF RT sequencing.
#=GF RA Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S,
#=GF RA Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V,
#=GF RA Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B,
#=GF RA Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G,
#=GF RA Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di
#=GF RA Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN,
#=GF RA Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo
#=GF RA JJ, Sander C, Zavolan M, Tuschl T
#=GF RL Cell. 2007;129:1401-1414.
#=GF WK miR-146
#=GF SQ 33

CAAE01015006.1/213889-213798 AGG--AGUGCUCUGCUGUGAGAACUGAAUUCCAUAGAUGGUGACAUUUG----UAUGUGUCAUCU-AUGGGCUCAGUUCUUUUGGCUUGGUACUGUUUU
AC008388.7/35916-36002       GUG--UAUCCUCAGCUUUGAGAACUGAAUUCCAUGGGUUG-UG-UCAG-------UGUCAGACCUGUGAAAUUCAGUUCUUCA-GCUGGGAUAUCUCUG
BX005397.20/24549-24637      CUG--AGCUCUUGGCUUUGAGAACUGAAUUCCAAGGGUGUCUGCUU-------UAUAUUCAGCCCACGGAGUUCAGUUCUUAA-GUUUGGAUGCUCACG
AAFR03025019.1/59826-59741   ------GCAUCUGGCUCUGAGAACUGAAUUCCAUAGGCUG-UGAGCUC-----AUGCAAAUGCCCUAGGAAGUCAGUUCUGGA-GUCCGGUGACCUCGA
CT025772.15/118748-118837    UUG--AGCACUUUUCCCUGAGAACUGAAUUCCAUAGAUGG-UGUUCAU-----GAAAAGUUCAUCUAUGGGCUCAGUUCUUCU-GGCAAUCUGUUUAAU
BAAE01103753.1/1540-1630     AGA--AGUGCUCUACUAUGAGAACUGAAUUCCAUAGAUGGUAGCUUUUC----UAGGUGUCAUCU-AUGGGCUCAGUUCUUUU-GGCAUGGUACUGGUU
AANH01005121.1/10850-10759   AUG--AGUGUUGUACUAUGAGAACUGAAUUCCAUAGAUGGUGGCAUCUU----CAGGUGUCAUCU-AUGGGCUCAGUUCUUUUGGUACGGUACUAAUUU
AAPN01141106.1/3079-3169     AUGC-GGUGCUUGGCUCUGAGAACUGAAUUCCAUAGGCUG-UGAGUUG-----AUGAGGAUGCCCUAGGGAUUCAGUUCCACA-GCCCAGCAACCCACA
AAPN01152393.1/27352-27260   CAG--UACGCUCAGCUUUGAGAACUGAAUUCCACGGGUUG-UGAUUGCAAC--UCUGACAGACCCGUGGGGCUCAGUUCUUGA-GCUGGGGUACCUCUG
AAIY01333564.1/1864-1775     UUU--GGUCCCUGGCUCUGAGAACUGAAUUCCAUAGGCUG-UGAGCUC-----UAGCAAAUGCCCUAGGAGCUCAGUUCUGGU-GCCCGGCAGGCCGUG
AAFR03012754.1/25474-25388   UUG--UAUCUUCAGCUUUGAGAACUGAAUUCCAUGGGUUG----UCUU-----UGUAUCAGACCUAUGAAACUCAGUUCUUCA-GCUGGAAUAUCUCUG
AAVX01275541.1/618-713       UGG--CAGCUCCAGCUGUGAGAACUGAAUUCCAUGGGCUGGUCACGCAGUUUUCUUCCUCAGUCCAUAGUAGUCAGUUCUUCC-GUUUGGCUGCUUGAU
AAYZ01153033.1/3261-3350     UUG--GUUGCCUGGCUCUGAGAACUGAAUUCUAUAGGCCG-UGAGCUC-----UAGCAGAUACCCUAGGGACUCAGUUCUGGU-GCCUGGCUGGGCUGC
AANN01666952.1/959-1048      UUG--GCCACCUGGCUCUGAGAACUGAAUUCCAUAGGCUG-UGAGCUC-----UAGCAAACGCCCUAGGGACUCAGUUCUGGU-GCCCGGCUGUGCUAU
ABDC01238493.1/6154-6243     UUG--GCCACCUGGCUCUGAGAACUGAAUUCCAUAGGCUG-UGAGCUC-----UAGUGAAUGCCCUAGGGACUCAGUUCUGGU-GCCUGGCUGUGCCAC
AAPY01213417.1/4703-4792     CCG--GCCACCUGGCUCUGAGAACUGAAUUCCAUAGGCCG-UGAGCUC-----CAGCAGAUGCCCUAGGGACUCAGUUCUGGU-GCCCGGCUGCGCAGU
AANG01052378.1/2905-2994     UUG--GCCACCUGGCUCUGAGAACUGAAUUCCAUAGGCUG-UAAGCUC-----AAGCAAAUGGCCUAGGGACUCAGUUCUGGU-GCUCGGCUGUGCUAU
CAAA01220328.1/4488-4574     GUG--UAUCCCCAGCUCUGAGAACUGAAUUCCAUGGGUUA----UAUC-----AAUGUCAGACCUGUGAAAUUCAGUUCUUCA-GCUGGGAUAGCUCUG
AAFC03000506.1/621-535       GUG--UAUCCUCAGCUUUGAGAACUGAAUUCCAUAGGUUG----UGUC-----AGUGUCAGACCUGUGAAGUUUAGUUCUUUA-GCUGGGAUAUCUCUA
AADA01134315.1/4724-4812     UUG--GCCACCUGGCACUGAGAACUGAAUUCCAUAGGCUG-UGAGCUC-----UAGCAAU-GCCCUGUGGACUCAGUUCUGGU-GCCCGGCAGUGCUAC
AAKN02016522.1/10507-10417   CUG--GCCAUCUGGCUUUAAGAACUGAAUUCUGUAGGCUG-UGAGCUC-----CAGCAAAUGCCUUAGGGACUCAGUUCUGGAAACCUGGCUGUGCUGC
AAGV020197496.1/364-278      GUG--UAUCCCCAGCUUUGAGAACUGAAUUCCAUGGGUUU----UCUC-----AAUGUCAGACCUGUGAAAUUCAGUUCUUCA-GCUGGGAUAUCUCUG
AABR05018978.1/7743-7657     GUG--UAUCCUCAGCUCUGAGAACUGAAUUCCAUGGGUUAUAGCAA---------UGUCAGACCUGUGAAGUUCAGUUCUUUA-GCUGGGAUAGCUCUA
AAGU03026742.1/175862-175773 CUG--GCCACCUGGCUCUGAGAACUGAAUUCCAUAGGCUG-UGAACUC-----UAGCAGAUGCCCUAGGAACUCAGUUCUGGU-GCCCGGCUGUGCUGC
AADN03006667.1/347156-347063 GUG--UAUCCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUAAUUGAAUCC--UUUGUCAGACCCAUGGGGCUCAGUUCUUCA-GCUUGGAUAUUUCUG
AADN03004045.1/26172-26268   UUGGCAGUUCCCAGCUCUGAGAACUGAAUUCCAUGGACUGGUUUCAAUUCCA-UGCGUUCAGUCCAUGGUAUUCAGUUCUCUA-GCUUGGCUGCAUCAA
AAGW02060858.1/19148-19237   UUG--GCCACCUGGCUCUGAGAACUGAAUUCCAUAGGCCG-UGAGCUC-----UAGCAAAUGCCCUGGGGACUCAGUUCUGGU-GCCCGGCUGUGCUGC
AAWZ02005630.1/5439-5350     AUG--GUUGCCUAGCUCUGAGAACUGAAUUCCAUAGGCUUUAG-AAUA-----AUUGAAACGCCCCGUGGAUUCAGUUCUACA-GCUAGGCAGCAACUA
AAWZ02023959.1/1703-1799     CUGGCAGUUCCAAGCUUUGAGAACUGGUUUUCGUGGACUGGUUUCCAUUUAG-UCUUCUCAGUCCAUAAUGCUCAGUUUUCCA-GCUUGGCUGCACCUG
CAAB02001937.1/426747-426656 UAG--AGUGCUCCGCCAUGAGAACUGAAUUCCAUAGAUGGUGACAUUUG----UAUGCUUCAUCU-AUGGGCUCAGUUCUUUUGGCUCGGUACUGUCCA
AAEX03015486.1/23854-23943   CUG--GCCACCUGGCUCUGAGAACUGAAUUCCAUAGGCUG-UGAGCUU-----GAGCAAACAGCCUAGGGACUCAGUUCUGGU-GCCCGGCUGUGCUCU
AAPE02031084.1/12272-12361   UUG--GCCACCUGGCUCUGAGAACUGAAUUCCAUAGGCUG-UGAGCUC-----UAGCAAAUGCCCUAGGGACUCAGUUCUGGU-GCCCGGCUGUGCUAC
AADN03004970.1/43219-43309   CUG--GCUGCUUGGCUUUGAGAACUGAAUUCCAUAGGCGUUAAAGCAU-----CCAAAAAUGCCCUAUGGAUUCAGUUCUGCA-GUUGGGCAGCAAAUA
#=GC SS_cons                 :::..::::<<-<<<----<<<<<<<<-------<<<<__._______.....________>>>>------->>>>>>>>---.>>>->>:::::::::
#=GC RF                      uUG..aguaCcugGCUcUGAGAACUGAAUUCCAUgGgcUG.Ugaucuu.....uaugaaaugcCcuagGgacUCAGUUCUuua.GCcugGcUguuuuuu
//
