INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-338 ACC RF00686 DESC microRNA mir-338 STATES 211 NODES 54 CLEN 69 W 85 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 25 15:13:23 2021 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/miRNA_relabelled/update_old_rfam_mirnas/RF00686/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 36 EFFN 2.447754 CKSUM 3606654893 NULL 0.000 0.000 0.000 0.000 GA 57.00 TC 57.50 NC 55.00 EFP7GF -10.7813 0.71912 ECMLC 0.61680 -5.72764 3.49961 1600000 355564 0.003375 ECMGC 0.46098 -13.75783 -1.84682 1600000 96977 0.004125 ECMLI 0.60619 -3.71279 4.51734 1600000 176155 0.006812 ECMGI 0.49227 -9.03146 1.35908 1600000 66598 0.006006 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 85 105 -7.146 -7.353 -0.412 -2.087 IL 1 1 2 1 4 1 18 89 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 18 85 105 -7.821 -0.023 -6.475 -0.594 0.318 -1.353 0.765 D 4 2 3 5 3 0 12 83 103 -7.824 -2.664 -0.255 IL 5 5 3 5 3 1 17 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 17 84 104 -7.853 -0.022 -6.507 -0.863 1.096 -1.665 -0.003 D 7 5 3 8 3 0 11 82 102 -7.736 -2.208 -0.360 IL 8 8 3 8 3 1 16 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 16 83 102 -7.907 -0.021 -6.561 -0.050 -0.047 -0.473 0.428 D 10 8 3 11 3 0 11 81 100 -7.566 -3.079 -0.190 IL 11 11 3 11 3 1 16 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 1 15 82 101 -7.907 -0.021 -6.561 -0.138 0.073 0.116 -0.065 D 13 11 3 14 3 0 11 80 100 -7.566 -1.974 -0.434 IL 14 14 3 14 3 1 15 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - c - - - ML 15 14 3 17 3 1 15 81 100 -8.354 -0.121 -3.690 -0.121 0.714 -0.763 -0.233 D 16 14 3 17 3 0 10 79 99 -6.445 -1.558 -0.624 IL 17 17 3 17 3 1 15 82 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 71 - a - - MR 18 17 3 20 3 1 16 80 99 -8.253 -0.020 -6.571 0.722 -1.298 0.413 -0.708 D 19 17 3 20 3 0 10 78 97 -7.786 -2.132 -0.382 IR 20 20 3 20 3 1 14 81 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 70 - G - - MR 21 20 3 23 3 1 15 79 98 -8.301 -0.019 -6.619 -0.212 -1.766 1.262 -1.169 D 22 20 3 23 3 0 9 77 96 -7.634 -2.812 -0.230 IR 23 23 3 23 3 1 14 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 69 - a - - MR 24 23 3 26 3 1 14 78 97 -8.301 -0.019 -6.619 0.708 -0.506 -0.685 0.057 D 25 23 3 26 3 0 9 76 96 -7.634 -2.407 -0.310 IR 26 26 3 26 3 1 13 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 68 - a - - MR 27 26 3 29 3 1 14 77 96 -8.321 -0.019 -6.638 0.624 0.050 -1.022 -0.102 D 28 26 3 29 3 0 9 76 95 -7.566 -0.501 -1.796 IR 29 29 3 29 3 1 12 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 67 - G - - MR 30 29 3 32 5 1 13 76 95 -7.256 -0.035 -7.071 -7.284 -8.175 -1.971 -3.248 1.799 -2.635 D 31 29 3 32 5 0 7 74 94 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 10 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 66 A U - - MP 33 32 3 37 6 2 14 75 94 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -4.135 -3.083 -4.124 3.515 -4.641 -5.741 -0.317 -4.142 -4.007 0.706 -4.571 -0.507 -0.733 -4.868 -2.256 -2.941 ML 34 32 3 37 6 1 9 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 8 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 4 71 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 10 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 10 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 65 A U - - MP 39 38 6 43 6 2 13 73 92 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -4.135 -3.083 -4.124 3.515 -4.641 -5.741 -0.317 -4.142 -4.007 0.706 -4.571 -0.507 -0.733 -4.868 -2.256 -2.941 ML 40 38 6 43 6 1 8 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 8 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 4 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 9 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 9 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 64 C G - - MP 45 44 6 49 6 2 12 71 90 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -4.957 -4.898 -4.577 -1.098 -3.211 -4.934 3.660 -4.062 -4.642 -0.908 -4.857 -2.853 0.258 -4.999 -0.930 -3.469 ML 46 44 6 49 6 1 8 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 7 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 4 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 9 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 9 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 63 A U - - MP 51 50 6 55 6 2 11 69 88 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -4.135 -3.083 -4.124 3.515 -4.641 -5.741 -0.317 -4.142 -4.007 0.706 -4.571 -0.507 -0.733 -4.868 -2.256 -2.941 ML 52 50 6 55 6 1 7 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 6 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 3 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 8 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 8 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 62 A U - - MP 57 56 6 61 4 2 9 67 86 -7.146 -7.353 -0.046 -5.767 -4.079 -3.510 -3.981 3.546 -4.202 -5.211 -0.147 -2.074 -4.138 0.319 -4.670 -1.206 -0.518 -4.478 -2.009 -3.041 ML 58 56 6 61 4 1 6 67 87 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 4 67 86 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 3 66 85 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 8 68 88 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 7 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 11 - U - - - ML 63 62 6 65 3 1 8 64 84 -8.528 -0.017 -6.846 -0.821 -0.398 -1.437 1.205 D 64 62 6 65 3 0 3 63 83 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 6 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 61 - U - - MR 66 65 3 68 5 1 7 63 83 -7.256 -0.035 -7.071 -7.284 -8.175 -1.834 -1.771 -2.584 1.705 D 67 65 3 68 5 0 1 62 81 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 5 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 60 A U - - MP 69 68 3 73 6 2 7 62 82 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -4.039 -3.494 -3.949 3.536 -4.158 -5.164 -0.122 -1.923 -4.105 0.322 -4.637 -1.207 -0.489 -4.433 -1.976 -3.015 ML 70 68 3 73 6 1 3 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 3 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 4 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 4 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 59 U A - - MP 75 74 6 79 6 2 6 60 80 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -4.641 -4.475 -4.428 -0.740 -3.279 -4.950 1.057 -4.004 -4.429 -0.545 -4.779 -2.359 3.506 -4.773 -0.944 -3.203 ML 76 74 6 79 6 1 2 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 2 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 3 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 4 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 58 C G - - MP 81 80 6 85 4 2 4 58 78 -7.047 -8.293 -0.071 -4.746 -4.957 -4.898 -4.577 -1.098 -3.211 -4.934 3.660 -4.062 -4.642 -0.908 -4.857 -2.853 0.258 -4.999 -0.930 -3.469 ML 82 80 6 85 4 1 1 58 77 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 2 57 77 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 56 75 -12.737 -14.007 -2.036 -0.404 IL 85 85 5 85 4 1 2 58 77 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 3 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 57 - U - - MR 87 86 6 89 5 1 4 56 76 -7.256 -0.035 -7.071 -7.284 -8.175 -1.834 -1.771 -2.584 1.705 D 88 86 6 89 5 0 0 55 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 89 89 3 89 5 1 2 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 56 C G - - MP 90 89 3 94 6 2 5 55 75 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -4.957 -4.898 -4.577 -1.098 -3.211 -4.934 3.660 -4.062 -4.642 -0.908 -4.857 -2.853 0.258 -4.999 -0.930 -3.469 ML 91 89 3 94 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 2 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 2 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 55 U A - - MP 96 95 6 100 6 2 5 53 73 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -4.641 -4.475 -4.428 -0.740 -3.279 -4.950 1.057 -4.004 -4.429 -0.545 -4.779 -2.359 3.506 -4.773 -0.944 -3.203 ML 97 95 6 100 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 54 G C - - MP 102 101 6 106 6 2 5 51 71 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -5.106 -3.270 -5.248 -0.048 -5.744 -4.833 -1.018 -5.511 -4.557 3.715 -4.870 -0.985 -1.394 -4.704 -3.076 -4.120 ML 103 101 6 106 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 53 a u - - MP 108 107 6 112 6 2 4 49 69 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -3.593 -2.502 -3.728 2.446 -4.518 -5.167 -0.224 -3.880 -3.520 1.344 -4.071 2.419 -0.457 -4.251 -2.116 -2.510 ML 109 107 6 112 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 52 U A - - MP 114 113 6 118 6 2 4 47 67 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -4.641 -4.475 -4.428 -0.740 -3.279 -4.950 1.057 -4.004 -4.429 -0.545 -4.779 -2.359 3.506 -4.773 -0.944 -3.203 ML 115 113 6 118 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 51 G C - - MP 120 119 6 124 6 2 4 45 65 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -5.106 -3.270 -5.248 -0.048 -5.744 -4.833 -1.018 -5.511 -4.557 3.715 -4.870 -0.985 -1.394 -4.704 -3.076 -4.120 ML 121 119 6 124 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 50 C G - - MP 126 125 6 130 6 2 4 43 63 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -4.957 -4.898 -4.577 -1.098 -3.211 -4.934 3.660 -4.062 -4.642 -0.908 -4.857 -2.853 0.258 -4.999 -0.930 -3.469 ML 127 125 6 130 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 49 U A - - MP 132 131 6 136 6 2 3 41 61 -9.186 -9.126 -0.020 -7.902 -8.182 -8.577 -4.258 -4.255 -4.165 -0.595 -1.879 -4.754 1.132 -3.866 -4.178 -0.418 -4.587 -2.323 3.438 -4.417 -0.859 -2.999 ML 133 131 6 136 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 48 G C - - MP 138 137 6 142 4 2 2 39 59 -7.146 -7.353 -0.046 -5.767 -5.106 -3.270 -5.248 -0.048 -5.744 -4.833 -1.018 -5.511 -4.557 3.715 -4.870 -0.985 -1.394 -4.704 -3.076 -4.120 ML 139 137 6 142 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 39 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 38 58 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 41 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - a - - - ML 144 143 6 146 3 1 1 37 56 -8.149 -0.018 -6.803 0.674 -0.069 -1.102 -0.022 D 145 143 6 146 3 0 0 36 55 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - g - - - ML 147 146 3 149 3 1 1 36 55 -8.149 -0.018 -6.803 0.074 -0.009 0.205 -0.320 D 148 146 3 149 3 0 0 35 54 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 26 - U - - - ML 150 149 3 152 3 1 1 35 54 -8.149 -0.018 -6.803 -0.835 -1.005 -1.748 1.402 D 151 149 3 152 3 0 0 34 53 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - G - - - ML 153 152 3 155 3 1 1 34 53 -8.149 -0.018 -6.803 -1.971 -3.248 1.799 -2.635 D 154 152 3 155 3 0 0 32 52 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - A - - - ML 156 155 3 158 3 1 1 33 52 -8.149 -0.258 -2.644 1.526 -1.948 -0.997 -1.477 D 157 155 3 158 3 0 0 31 51 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - G - - - ML 159 158 3 161 3 1 1 32 51 -7.913 -0.021 -6.567 -1.471 -2.673 1.697 -2.059 D 160 158 3 161 3 0 0 30 50 -7.546 -0.447 -1.937 IL 161 161 3 161 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - U - - - ML 162 161 3 164 3 1 1 31 50 -8.149 -0.018 -6.803 -1.386 -1.091 -2.126 1.545 D 163 161 3 164 3 0 0 29 48 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - G - - - ML 165 164 3 167 3 1 1 29 48 -8.149 -0.108 -3.871 -0.460 -1.468 1.298 -1.142 D 166 164 3 167 3 0 0 28 47 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - u - - - ML 168 167 3 170 3 1 1 28 47 -8.061 -0.053 -4.939 0.347 -0.534 -0.438 0.378 D 169 167 3 170 3 0 0 27 46 -6.874 -2.387 -0.321 IL 170 170 3 170 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - c - - - ML 171 170 3 173 3 1 1 27 46 -2.331 -0.337 -6.681 -0.245 0.349 -0.112 -0.063 D 172 170 3 173 3 0 0 26 45 -2.436 -1.782 -0.931 IL 173 173 3 173 3 1 1 27 46 -1.885 -0.526 -4.845 0.000 0.000 0.000 0.000 [ MATL 41 ] 36 - u - - - ML 174 173 3 176 3 1 1 25 44 -8.108 -0.041 -5.340 0.333 -0.402 -0.671 0.439 D 175 173 3 176 3 0 0 24 43 -6.548 -1.095 -0.940 IL 176 176 3 176 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 37 - u - - - ML 177 176 3 179 3 1 1 24 43 -8.127 -0.075 -4.408 -0.139 0.359 -0.937 0.364 D 178 176 3 179 3 0 0 23 42 -6.386 -1.899 -0.474 IL 179 179 3 179 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - a - - - ML 180 179 3 182 3 1 1 23 42 -8.071 -0.246 -2.709 0.745 -0.910 -0.631 0.197 D 181 179 3 182 3 0 0 22 41 -6.808 -1.140 -0.896 IL 182 182 3 182 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 39 - c - - - ML 183 182 3 185 3 1 1 22 41 -7.913 -0.021 -6.567 -0.073 0.107 -0.093 0.050 D 184 182 3 185 3 0 0 21 40 -7.546 -0.447 -1.937 IL 185 185 3 185 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 40 - a - - - ML 186 185 3 188 3 1 1 21 40 -8.149 -0.018 -6.803 0.277 -0.374 -0.160 0.166 D 187 185 3 188 3 0 0 20 39 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 41 - g - - - ML 189 188 3 191 3 1 1 20 39 -8.149 -0.043 -5.286 0.191 -0.511 0.334 -0.159 D 190 188 3 191 3 0 0 19 38 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 42 - a - - - ML 192 191 3 194 3 1 1 19 37 -8.125 -0.018 -6.779 0.573 -0.118 -0.655 -0.065 D 193 191 3 194 3 0 0 18 37 -6.407 -1.275 -0.799 IL 194 194 3 194 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 43 - a - - - ML 195 194 3 197 3 1 1 17 36 -8.149 -0.018 -6.803 0.747 -0.925 0.087 -0.447 D 196 194 3 197 3 0 0 17 36 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 44 - A - - - ML 198 197 3 200 3 1 1 16 35 -8.149 -0.018 -6.803 1.468 -1.858 -0.807 -1.373 D 199 197 3 200 3 0 0 16 34 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 45 - C - - - ML 201 200 3 203 3 1 1 15 33 -8.149 -0.018 -6.803 -2.196 1.727 -3.027 -1.518 D 202 200 3 203 3 0 0 15 33 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 46 - U - - - ML 204 203 3 206 3 1 1 13 31 -8.149 -0.018 -6.803 -1.834 -1.771 -2.584 1.705 D 205 203 3 206 3 0 0 13 32 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 47 - C - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -2.196 1.727 -3.027 -1.518 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-338 ACC RF00686 DESC microRNA mir-338 LENG 69 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 25 15:13:23 2021 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 36 EFFN 3.212402 CKSUM 3606654893 STATS LOCAL MSV -8.7243 0.71912 STATS LOCAL VITERBI -8.9736 0.71912 STATS LOCAL FORWARD -3.6491 0.71912 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39113 1.50612 1.41824 1.24723 1.38629 1.38629 1.38629 1.38629 0.30304 4.10765 1.40658 1.46634 0.26236 0.00000 * 1 1.90302 1.12057 2.44187 0.82602 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.04357 3.84819 3.84819 1.46634 0.26236 2.03914 0.13942 2 2.15175 0.53938 2.72590 1.44763 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04246 3.87342 3.87342 1.46634 0.26236 1.61081 0.22280 3 1.44515 1.39664 1.71402 1.08849 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.04062 3.91685 3.91685 1.46634 0.26236 2.60726 0.07660 4 1.53295 1.30198 1.25956 1.47697 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.04062 3.91685 3.91685 1.46634 0.26236 1.40612 0.28116 5 1.51852 0.81664 1.95607 1.62134 5 c - - : 1.38629 1.38629 1.38629 1.38629 0.03879 3.96207 3.96207 1.46634 0.26236 0.19598 1.72615 6 0.21668 3.24708 2.17812 3.15419 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 7 0.21614 3.25062 2.17896 3.15893 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 8 3.58734 0.16196 3.40982 2.42129 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 9 0.21589 3.25230 2.17936 3.16119 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 10 0.17148 3.03626 2.67248 3.20677 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 11 2.10226 1.69203 2.50780 0.49065 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 12 0.17720 2.98111 2.65851 3.17966 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 13 3.43071 2.25592 3.22655 0.19460 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 14 3.59530 0.16138 3.41402 2.42279 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 15 3.56197 0.16383 3.39634 2.41648 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 16 3.41403 2.25437 3.21811 0.19587 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 17 2.82837 3.60996 0.12217 3.54594 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 18 0.95194 3.12530 0.66300 2.90435 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 19 3.42186 2.25510 3.22208 0.19527 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 20 2.82959 3.61162 0.12197 3.54820 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 21 3.58528 0.16211 3.40873 2.42091 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 22 3.30138 2.09932 3.11462 0.22786 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 23 2.82897 3.61078 0.12207 3.54706 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 24 0.88691 1.41088 2.23655 1.43836 24 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 25 1.36317 1.36086 1.19583 1.68600 25 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 26 2.10281 2.20613 2.78181 0.34837 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 27 3.07887 4.00302 0.09688 3.57335 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 28 0.27631 2.94050 2.14216 2.64253 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.22647 4.10765 1.68087 1.46634 0.26236 1.09861 0.40547 29 2.70867 3.58769 0.14685 3.16319 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04042 3.92160 3.92160 1.46634 0.26236 0.16266 1.89630 30 2.57408 2.26704 3.09122 0.25526 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 31 1.80424 2.50176 0.41798 2.35302 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.10498 4.10765 2.48638 1.46634 0.26236 1.09861 0.40547 32 1.13652 1.78039 1.69364 1.11888 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06336 4.03855 3.12883 1.46634 0.26236 0.81172 0.58715 33 1.61974 1.09228 1.43492 1.47638 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.28514 1.46678 4.04997 0.26397 1.46101 0.94784 0.49033 34 1.14479 1.67773 1.87110 1.07600 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05280 4.07549 3.36826 1.46634 0.26236 0.52111 0.90106 35 1.51812 1.08756 2.08414 1.14123 37 c - - _ 1.38629 1.38629 1.38629 1.38629 0.07932 4.09059 2.82127 1.46634 0.26236 1.39336 0.28534 36 0.83815 2.08534 1.85245 1.25046 38 a - - _ 1.38629 1.38629 1.38629 1.38629 0.21989 4.04685 1.71528 1.46634 0.26236 0.61575 0.77705 37 1.47424 1.27697 1.42162 1.38293 39 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04042 3.92160 3.92160 1.46634 0.26236 0.16266 1.89630 38 1.19366 1.64812 1.48312 1.28176 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 39 1.26970 1.74871 1.10612 1.54063 41 g - - _ 1.38629 1.38629 1.38629 1.38629 0.05301 4.10765 3.34726 1.46634 0.26236 1.09861 0.40547 40 0.96820 1.44760 1.86829 1.46657 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03410 4.08874 4.08874 1.46634 0.26236 0.66009 0.72734 41 0.84243 2.07665 1.29867 1.76553 43 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 42 0.31609 2.86965 1.98866 2.55869 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 43 3.30239 0.12883 3.87021 2.76099 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 44 2.97107 2.87510 3.50057 0.14831 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 45 3.30239 0.12883 3.87021 2.76099 47 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 46 3.72365 0.14621 3.45358 2.52264 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 47 0.24345 3.27986 2.02407 3.07189 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 48 2.69990 3.57439 0.13954 3.35246 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 49 3.72723 0.14599 3.45529 2.52332 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 50 0.22130 3.41360 2.09136 3.16809 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 51 3.10954 1.99303 2.91601 0.26795 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 52 3.73548 0.14547 3.45923 2.52486 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 53 0.22075 3.41807 2.09208 3.17304 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 54 2.70690 3.58514 0.13817 3.36468 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 55 2.97107 2.87510 3.50057 0.14831 57 U - - - 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 56 2.70584 3.58351 0.13838 3.36282 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 57 0.22018 3.42269 2.09282 3.17817 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 58 3.42418 2.92786 3.08451 0.14138 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 59 2.97107 2.87510 3.50057 0.14831 61 U - - - 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 60 3.43292 2.93854 3.10507 0.13933 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 61 3.38303 2.51790 3.06142 0.17601 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 62 2.70395 3.58061 0.13875 3.35952 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 63 3.39012 2.51905 3.06448 0.17545 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 64 3.39625 2.52003 3.06712 0.17496 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.03345 4.10765 4.10765 1.46634 0.26236 1.09861 0.40547 65 3.07887 4.00302 0.09688 3.57335 67 G - - : 1.38629 1.38629 1.38629 1.38629 0.21410 4.10765 1.73565 1.46634 0.26236 1.09861 0.40547 66 0.92313 1.31936 2.17534 1.50576 68 a - - : 1.38629 1.38629 1.38629 1.38629 0.05726 3.93349 3.32210 1.46634 0.26236 2.54308 0.08189 67 0.86391 1.75234 1.89663 1.36630 69 a - - : 1.38629 1.38629 1.38629 1.38629 0.04062 3.91685 3.91685 1.46634 0.26236 2.60726 0.07660 68 1.60327 2.79172 0.43739 2.38892 70 G - - : 1.38629 1.38629 1.38629 1.38629 0.08359 3.91685 2.80868 1.46634 0.26236 2.60726 0.07660 69 0.85387 2.40462 1.05370 2.00031 71 a - - : 1.38629 1.38629 1.38629 1.38629 0.02141 3.85467 * 1.46634 0.26236 0.00000 * //