INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-198 ACC RF00681 DESC mir-198 microRNA precursor family STATES 190 NODES 45 CLEN 62 W 78 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 1 23:34:17 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF00681/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 1.743164 CKSUM 159327180 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 80.10 NC 53.60 EFP7GF -9.5623 0.71919 ECMLC 0.66554 -4.44126 4.17694 1600000 371696 0.003228 ECMGC 0.43072 -14.63209 -0.96309 1600000 144200 0.002774 ECMLI 0.65357 -3.01616 5.42874 1600000 299354 0.004009 ECMGI 0.48086 -9.34419 2.21331 1600000 103671 0.003858 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 78 98 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 IL 1 1 2 1 6 1 11 80 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 11 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 62 U A - - MP 3 2 3 7 6 2 15 78 98 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -4.041 -3.861 -3.896 -0.167 -2.870 -4.473 1.455 -3.555 -3.902 0.110 -4.283 -1.765 3.252 -4.198 -0.550 -2.741 ML 4 2 3 7 6 1 8 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 8 76 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 3 74 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 10 78 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 10 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 61 C G - - MP 9 8 6 13 6 2 13 76 96 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -4.405 -4.298 -4.119 -0.544 -2.870 -4.550 3.504 -3.665 -4.164 -0.282 -4.440 -2.244 0.659 -4.484 -0.573 -3.009 ML 10 8 6 13 6 1 8 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 7 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 3 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 9 76 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 10 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 60 A U - - MP 15 14 6 19 6 2 12 74 94 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -3.674 -2.736 -3.701 3.250 -3.981 -5.034 0.311 -3.750 -3.598 1.205 -4.140 -0.232 -0.107 -4.241 -1.631 -2.542 ML 16 14 6 19 6 1 7 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 6 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 3 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 9 74 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 9 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 59 u a - - MP 21 20 6 25 6 2 10 72 92 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -3.056 -3.100 -3.077 0.383 0.119 -3.770 1.808 -2.968 -3.104 0.528 -3.571 -1.298 2.645 -3.284 -0.141 -2.082 ML 22 20 6 25 6 1 6 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 5 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 2 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 8 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 8 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 58 U A - - MP 27 26 6 31 4 2 8 70 90 -6.869 -7.077 -0.056 -5.491 -4.041 -3.861 -3.896 -0.167 -2.870 -4.473 1.455 -3.555 -3.902 0.110 -4.283 -1.765 3.252 -4.198 -0.550 -2.741 ML 28 26 6 31 4 1 5 70 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 3 70 90 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 2 69 89 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 7 71 91 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 7 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 33 32 6 35 3 1 7 67 87 -7.892 -0.022 -6.546 -1.425 -2.620 1.685 -2.006 D 34 32 6 35 3 0 2 66 86 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 6 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 36 35 3 38 3 1 6 66 86 -8.287 -0.020 -6.605 -1.425 -2.620 1.685 -2.006 D 37 35 3 38 3 0 1 65 85 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 5 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 57 - A - - MR 39 38 3 41 3 1 5 65 85 -8.287 -0.020 -6.605 1.685 -2.225 -1.872 -1.754 D 40 38 3 41 3 0 0 64 83 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 4 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 56 - U - - MR 42 41 3 44 3 1 5 64 84 -8.287 -0.020 -6.605 -1.353 -1.373 -2.079 1.578 D 43 41 3 44 3 0 0 63 82 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 3 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 55 - A - - MR 45 44 3 47 5 1 4 63 83 -7.030 -0.041 -6.846 -7.058 -7.949 1.685 -2.225 -1.872 -1.754 D 46 44 3 47 5 0 0 62 82 -5.352 -0.707 -2.978 -4.409 -2.404 IR 47 47 3 47 5 1 2 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 54 U A - - MP 48 47 3 52 6 2 4 62 82 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -4.041 -3.861 -3.896 -0.167 -2.870 -4.473 1.455 -3.555 -3.902 0.110 -4.283 -1.765 3.252 -4.198 -0.550 -2.741 ML 49 47 3 52 6 1 1 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 2 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 2 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 53 C G - - MP 54 53 6 58 4 2 2 60 80 -6.792 -8.038 -0.085 -4.491 -4.405 -4.298 -4.119 -0.544 -2.870 -4.550 3.504 -3.665 -4.164 -0.282 -4.440 -2.244 0.659 -4.484 -0.573 -3.009 ML 55 53 6 58 4 1 1 60 79 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 1 1 59 79 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 0 0 57 77 -12.737 -14.007 -2.036 -0.404 IL 58 58 5 58 4 1 1 60 79 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 1 1 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 52 - A - - MR 60 59 6 62 3 1 2 58 78 -8.287 -0.020 -6.605 1.685 -2.225 -1.872 -1.754 D 61 59 6 62 3 0 0 57 76 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 51 - U - - MR 63 62 3 65 5 1 1 57 77 -7.030 -0.041 -6.846 -7.058 -7.949 -1.353 -1.373 -2.079 1.578 D 64 62 3 65 5 0 0 56 76 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 50 C G - - MP 66 65 3 70 6 2 3 56 76 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -3.698 -3.728 -3.619 -0.137 -0.098 -4.210 3.247 -3.379 -3.657 0.023 -4.049 -1.862 0.903 -3.878 -0.427 -2.588 ML 67 65 3 70 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 49 A U - - MP 72 71 6 76 6 2 2 54 74 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -3.674 -2.736 -3.701 3.250 -3.981 -5.034 0.311 -3.750 -3.598 1.205 -4.140 -0.232 -0.107 -4.241 -1.631 -2.542 ML 73 71 6 76 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 48 G C - - MP 78 77 6 82 6 2 2 52 72 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -4.604 -3.028 -4.691 0.291 -5.038 -4.639 -0.436 -4.923 -4.236 3.603 -4.583 -0.722 -0.826 -4.377 -2.466 -3.570 ML 79 77 6 82 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 47 A U - - MP 84 83 6 88 6 2 2 50 70 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -3.674 -2.736 -3.701 3.250 -3.981 -5.034 0.311 -3.750 -3.598 1.205 -4.140 -0.232 -0.107 -4.241 -1.631 -2.542 ML 85 83 6 88 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 46 G C - - MP 90 89 6 94 6 2 2 48 68 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -3.627 -2.504 -3.648 1.288 -4.188 -4.334 0.277 -3.994 -3.644 3.085 -4.064 0.736 -0.009 -3.675 -1.683 -2.566 ML 91 89 6 94 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 45 g u - - MP 96 95 6 100 6 2 2 46 66 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -3.526 -2.330 -3.685 1.188 -4.326 -5.052 0.050 -3.721 -3.372 1.480 -3.888 2.981 -0.310 -4.279 -1.891 -2.405 ML 97 95 6 100 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 44 g u - - MP 102 101 6 106 6 2 2 44 64 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -3.526 -2.330 -3.685 1.188 -4.326 -5.052 0.050 -3.721 -3.372 1.480 -3.888 2.981 -0.310 -4.279 -1.891 -2.405 ML 103 101 6 106 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 43 G C - - MP 108 107 6 112 6 2 2 42 62 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -4.604 -3.028 -4.691 0.291 -5.038 -4.639 -0.436 -4.923 -4.236 3.603 -4.583 -0.722 -0.826 -4.377 -2.466 -3.570 ML 109 107 6 112 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 42 A U - - MP 114 113 6 118 4 2 2 40 60 -6.869 -7.077 -0.056 -5.491 -3.674 -2.736 -3.701 3.250 -3.981 -5.034 0.311 -3.750 -3.598 1.205 -4.140 -0.232 -0.107 -4.241 -1.631 -2.542 ML 115 113 6 118 4 1 1 41 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 40 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 39 59 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 1 42 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - G - - - ML 120 119 6 122 3 1 1 38 57 -7.892 -0.022 -6.546 -0.098 -1.679 1.190 -1.081 D 121 119 6 122 3 0 0 37 56 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - a - - - ML 123 122 3 125 3 1 1 37 56 -7.892 -0.022 -6.546 0.913 -0.184 -1.059 -0.400 D 124 122 3 125 3 0 0 35 55 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - U - - - ML 126 125 3 128 5 1 1 36 55 -7.030 -0.041 -6.846 -7.058 -7.949 -1.353 -1.373 -2.079 1.578 D 127 125 3 128 5 0 0 34 54 -4.959 -0.803 -4.221 -2.596 -2.508 IL 128 128 3 128 5 1 1 36 55 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 41 A U - - MP 129 128 3 133 6 2 2 35 54 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -3.207 -2.828 -3.252 3.113 -3.254 -4.245 0.710 -1.259 -3.326 0.978 -3.853 -0.701 0.361 -3.536 -1.121 -2.314 ML 130 128 3 133 6 1 1 33 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 33 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 40 G C - - MP 135 134 6 139 6 2 2 33 52 -9.078 -9.017 -0.022 -7.794 -8.074 -8.469 -4.604 -3.028 -4.691 0.291 -5.038 -4.639 -0.436 -4.923 -4.236 3.603 -4.583 -0.722 -0.826 -4.377 -2.466 -3.570 ML 136 134 6 139 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 39 G C - - MP 141 140 6 145 4 2 2 31 50 -6.869 -7.077 -0.056 -5.491 -3.931 -0.986 -3.965 0.720 -4.483 -4.326 -0.037 -4.360 -3.872 3.389 -4.245 -0.414 -0.325 -3.816 -1.986 -2.927 ML 142 140 6 145 4 1 1 31 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - U - - - ML 147 146 6 149 3 1 1 28 47 -7.892 -0.022 -6.546 -1.353 -1.373 -2.079 1.578 D 148 146 6 149 3 0 0 27 46 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - u - - - ML 150 149 3 152 3 1 1 27 46 -7.892 -0.022 -6.546 0.189 -0.801 -1.106 0.865 D 151 149 3 152 3 0 0 26 45 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - C - - - ML 153 152 3 155 3 1 1 26 45 -7.892 -0.022 -6.546 -1.566 1.573 -2.384 -1.016 D 154 152 3 155 3 0 0 25 44 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - C - - - ML 156 155 3 158 3 1 1 25 44 -7.892 -0.022 -6.546 -1.038 1.254 -1.850 -0.234 D 157 155 3 158 3 0 0 24 43 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - U - - - ML 159 158 3 161 3 1 1 24 42 -7.892 -0.022 -6.546 -1.353 -1.373 -2.079 1.578 D 160 158 3 161 3 0 0 23 42 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - G - - - ML 162 161 3 164 3 1 1 22 41 -7.892 -0.022 -6.546 -1.425 -2.620 1.685 -2.006 D 163 161 3 164 3 0 0 21 40 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - U - - - ML 165 164 3 167 3 1 1 21 40 -7.892 -0.022 -6.546 -1.353 -1.373 -2.079 1.578 D 166 164 3 167 3 0 0 20 39 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - G - - - ML 168 167 3 170 3 1 1 20 39 -7.892 -0.022 -6.546 -1.425 -2.620 1.685 -2.006 D 169 167 3 170 3 0 0 19 38 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - A - - - ML 171 170 3 173 3 1 1 19 37 -7.892 -0.022 -6.546 1.685 -2.225 -1.872 -1.754 D 172 170 3 173 3 0 0 18 37 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - U - - - ML 174 173 3 176 3 1 1 18 36 -7.892 -0.022 -6.546 -1.353 -1.373 -2.079 1.578 D 175 173 3 176 3 0 0 17 36 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 35 - U - - - ML 177 176 3 179 3 1 1 16 35 -7.892 -0.022 -6.546 -1.353 -1.373 -2.079 1.578 D 178 176 3 179 3 0 0 16 34 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 36 - U - - - ML 180 179 3 182 3 1 1 15 33 -7.892 -0.022 -6.546 -1.353 -1.373 -2.079 1.578 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 37 - U - - - ML 183 182 3 185 3 1 1 13 32 -7.892 -0.022 -6.546 -1.353 -1.373 -2.079 1.578 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - U - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 -1.353 -1.373 -2.079 1.578 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-198 ACC RF00681 DESC mir-198 microRNA precursor family LENG 62 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 1 23:34:17 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/RF00681/CM NSEQ 10 EFFN 2.446289 CKSUM 159327180 STATS LOCAL MSV -7.9908 0.71919 STATS LOCAL VITERBI -8.7630 0.71919 STATS LOCAL FORWARD -3.5130 0.71919 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.47772 1.64047 1.38139 1.11864 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 0.00000 * 1 3.06028 1.94715 2.79780 0.28835 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 2 3.27324 0.22554 3.04062 2.15220 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 3 0.32063 2.83835 1.87666 2.76959 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 4 2.43790 1.20756 2.25212 0.67618 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 5 3.03042 1.94539 2.78452 0.29167 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 6 2.75183 3.63668 0.13975 3.21205 6 G - - - 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 7 2.75183 3.63668 0.13975 3.21205 7 G - - - 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 8 3.02444 1.94503 2.78183 0.29235 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 9 3.24763 0.22817 3.02833 2.14774 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 10 2.82364 0.33584 2.64027 1.86734 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 11 0.32254 2.83057 1.87518 2.75846 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 12 2.61496 3.28788 0.16280 3.22557 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 13 0.32212 2.83228 1.87550 2.76090 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 14 1.76644 2.62427 0.39566 2.48491 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 15 1.94162 2.94901 0.29538 2.81530 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 16 1.94154 2.94885 0.29542 2.81509 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 17 2.61520 3.28817 0.16275 3.22597 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 18 0.32223 2.83186 1.87542 2.76030 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 19 1.52327 2.76557 0.46991 2.36442 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 20 0.68963 1.49282 2.24774 1.78461 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 21 2.65714 2.61309 3.17642 0.20480 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 22 0.37066 2.28306 2.09807 2.46443 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 23 2.61857 3.29225 0.16201 3.23162 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 24 2.02611 2.92857 0.28244 2.80122 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 25 2.65714 2.61309 3.17642 0.20480 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 26 1.26313 2.04231 2.26319 0.72673 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 27 2.90728 0.18952 3.48358 2.43815 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 28 2.36552 0.40759 2.95022 1.66856 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 29 2.65714 2.61309 3.17642 0.20480 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 30 2.75183 3.63668 0.13975 3.21205 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 31 2.65714 2.61309 3.17642 0.20480 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 32 2.75183 3.63668 0.13975 3.21205 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 33 0.14674 3.28952 3.00869 2.99858 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 34 2.65714 2.61309 3.17642 0.20480 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 35 2.65714 2.61309 3.17642 0.20480 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 36 2.65714 2.61309 3.17642 0.20480 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 37 2.65714 2.61309 3.17642 0.20480 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 38 2.65714 2.61309 3.17642 0.20480 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 39 3.02416 0.28859 2.74630 1.98108 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 40 3.42043 0.19318 3.12221 2.31359 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 41 2.68321 2.32118 2.35929 0.30244 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 42 2.98424 2.17507 2.64299 0.26831 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 43 3.42366 0.19290 3.12365 2.31420 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 44 3.02289 1.94970 2.74647 0.29455 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 45 3.02367 1.94975 2.74680 0.29446 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 46 2.72302 0.56063 2.43670 1.28726 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 47 2.98818 2.17557 2.64451 0.26783 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 48 3.43205 0.19218 3.12739 2.31580 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 49 2.99194 2.17604 2.64596 0.26738 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 50 1.69496 2.81208 0.38093 2.61607 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 51 2.65714 2.61309 3.17642 0.20480 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 52 0.14674 3.28952 3.00869 2.99858 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 53 2.42898 3.20023 0.19610 3.01205 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 54 0.33034 2.97316 1.78261 2.78092 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 55 0.14674 3.28952 3.00869 2.99858 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 56 2.65714 2.61309 3.17642 0.20480 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 57 0.14674 3.28952 3.00869 2.99858 57 A - - - 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 58 0.33090 2.97040 1.78231 2.77760 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 59 0.61407 2.41951 1.34145 2.22168 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 60 3.00308 2.17745 2.65023 0.26605 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 61 2.43650 3.21069 0.19404 3.02457 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90768 3.90768 1.46634 0.26236 1.09861 0.40547 62 0.32793 2.98524 1.78394 2.79549 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.02071 3.88739 * 1.46634 0.26236 0.00000 * //