# STOCKHOLM 1.0
#=GF ID MIR159
#=GF AC RF00638
#=GF DE MIR159 microRNA precursor family
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF GA 74.0
#=GF NC 73.9
#=GF TC 74.1
#=GF SE miRBase; Wilkinson A
#=GF SS Predicted; WAR; Wilkinson A
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000010;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 15200956
#=GF RT Computational identification of plant microRNAs and their targets,
#=GF RT including a stress-induced miRNA.
#=GF RA Jones-Rhoades MW, Bartel DP
#=GF RL Mol Cell. 2004;14:787-799.
#=GF RN [2]
#=GF RM 17182867
#=GF RT A diverse and evolutionarily fluid set of microRNAs in Arabidopsis
#=GF RT thaliana.
#=GF RA Rajagopalan R, Vaucheret H, Trejo J, Bartel DP
#=GF RL Genes Dev. 2006;20:3407-3425.
#=GF RN [3]
#=GF RM 15258262
#=GF RT Novel and stress-regulated microRNAs and other small RNAs from
#=GF RT Arabidopsis.
#=GF RA Sunkar R, Zhu JK
#=GF RL Plant Cell. 2004;16:2001-2019.
#=GF WK MicroRNA
#=GF SQ 66

AP001800.2/28917-28720       AUGGAUGGAAGAGAGCGU-CCU--UCAGUCCACUCAUGGGCGG----UG----CU-AG--GGU-CGAAUUAG---------------CUGCCGACU-CAUUC-ACCCAC-AUG-CCA-AGCAA-GAAACGC--UUGAGA-------------------------------------------------------------
AP001800.2/44264-44453       GAAGAAGAAGACGAGCUC-CCU--UCGAUCCAAUCCAGGAGAG----GA----AG-U---GGUAGGAUGCAG---------------CUGCCGGUU-CAUGG-AUACCU-CUG-CAGUGCAUG-UCGUAGG---------------------------------------------------------------------
AY884232.1/7-186             ---------GAGGUGCUC-CUU--UUAGUCCAAUACGGAGGGC----UG----AG-A---AGC-GGCUAGAG---------------CUGCCAUCU-CAUGC-AUUUAG-GCA-AUGCUUAAC-AUUUGACG-AAGAG--------------------------------------------------------------
CU406292.1/220-493           GUUGUGGACGUUGAGCUC-CUU--UCGGUCCAAAAAGGGGUGU----UG----CU-GUG-GGU-CGAUUGAG---------------CUGCUGGGU-CAUGG-AUCCCG-UUA-GCCUACUCC-AUGUUCA--UCAUUCAGCUCGAGAUCUGAAAGAAACUACUCCAAUUUAUACUAAUAGUAUGUGUGUAGAUAGGAAA
AY922324.1/461-652           UAUAUGUAGAGAGAGCUU-CCU--UGAGUCCAUUCACAGGUCG----UG----AU-AU--GAU-UCAAUUAG---------------CUUCCGACU-CAUUC-AUCCAA-AUA-CCGAGUCGC-CAAAAUU--CAAA---------------------------------------------------------------
AP002745.2/122724-122526     GAGGAGGAAGAGGAGCUC-CUU--UCGAUCCAAUUCAGGAGAG----GA----AG-U---GGUAGGAUGCAG---------------CUGCCGAUU-CAUGG-AUACCU-CUG-GAGUGCAUG-GCAGCAA---------------------------------------------------------------------
AP002745.2/130424-130234     UGAUGUGAGGAGGAGCUC-CUU--UCGAUCCAAUUCAGGAGAG----GA----AG-UG--GUG-GGAUGCAG---------------CUGCCGGUU-CAUGG-AUACCU-CUG-CA-GUUCAU-GCCG------------------------------------------------------------------------
AY884228.1/1-188             -----UUUAAGAGAGCUU-UCU--UCAGUCCACUCAUGGACGG----GC----GA-AG--GGUUUGGAUUAG---------------CUGCCGACU-CAUUC-AUUCAA-ACA-CAGUAGAAA-UUAAGGG--AGCAGU-------------------------------------------------------------
AM474694.1/394-202           UGGGGGUUGAACAAGCUG-CCC--UCAUUCCAAAUUCAAAAGA----GU----AG-A---AGG-UGUUACAU---------------CUGCUGGUU-CAUGG-AUACCU-UUG-UAGUGUACA-GAUUAAU--AUAUC--------------------------------------------------------------
AY728415.1/7-185             ---------AAAGUGCUC-CUU--UUAGUCCAAUAAGGAGGGC----UG----AG-A---AGC-GGCUAGAG---------------CUGCCAUCU-CAUGC-AUUUAGGCAA-UGCUUAACA-UUUGGCA--AAGA---------------------------------------------------------------
AY551214.1/3-192             GGUUAUGAAGUGGAGCUC-CUU--UCGUUCCAAUGAAAGGUUU----AU----CU-GAA-GGG-UGAUACAG---------------CUGCUUGUU-CAUGG-UUCCCA-CUA-UUC-UAUCU-CAUAGGA---------------------------------------------------------------------
AM458581.1/27231-27413       UUACAUUGAAGAGAGCUU-UCU--UCAGUCCACUCAUGGGUGG----CA----GU-AG--GAU-UGAAUUAG---------------CUGCCGACUCCAUUC-AUCCAA-AUA-CUGUGUUAA-GGACUAC---------------------------------------------------------------------
AK064418.1/273-459           UGUGUAAGAAGAGAGCUC-UCU--UCAGUCCACUCUCAGAUGG----CU----GU-AG--GGU-UUUAUUAG---------------CUGCCGAAU-CAUCC-AUUCAC-CUA-CCAGGAAAG-UUGC-----AGGAG--------------------------------------------------------------
AY775975.1/842-1033          UCGAUAGAUAGAGAGCUU-CCU--UGAGUCCAUUCACAGGUUG----UG----AU-AU--GAU-CCAAUUAG---------------CUUCCGAAU-CAUUC-AUCCAA-AUA-CUGAGUCAC-CAAAAUU--CAAA---------------------------------------------------------------
AARH01017144.1/4716-4901     GAUUAGGGAGUGGAGCUC-CUU--GAAGUCCAAUAGAGGUUCU----UG----CU-G---GGU-AGAUUAAG---------------CUGCUAAGC-UAUGG-AUCCAC-AGU-CCUAUCUAU-CAAC------------------------------------------------------------------------
CR962124.2/16450-16257       UGAAUGGUAAGAGAGCUU-UCU--UUAGUCCACUCAUGGGUGA----CA----AU-AA--GAUUUCAAUUAG---------------CUGCUGACU-CAUUC-AUCCAA-AUG-UUGAGUAAA-AUAU-----AUAGA--------------------------------------------------------------
AASG02014601.1/2536-2726     UAUGGGAAGAAGGAGCUC-UCU--UCAGUCCAGUCCAAGGCGG----UU----GA-GG--GCUGGGACUUAG---------------CUGCUGACU-CGUUG-GUUCAA-GAG-CUCAUCAUC-AUCA-----AUGUG--------------------------------------------------------------
AARH01000160.1/529592-529782 UAAUAGCUAAGAGAGCUU-UCU--UCAGUCCACUCAUGGGUGG----UA----GU-AG--GAU-UUAAUUAG---------------CUGCCGACU-CAUUC-AUCCAA-AUA-CUGAGUUAA-AGGACAAG-GAGAU--------------------------------------------------------------
AY728413.1/1-192             ---GGUGGGAGAGAGCUU-CCU--UCAGCCCACUCAUGGAUAG----GAGA--AA-GG--GGU-UGAAUUAG---------------CUGCCGACU-CAUUC-AUUCAA-GCA-CCAGUAGAA-AAAGGGG--AAUGGAUAU----------------------------------------------------------
AB005233.1/55604-55413       GGUGGAGGAAGAGAGCUU-UCU--UCGGUCCACUCAUGGAGUA----AU----AU-GUGAGAU-UUAAUUGA---------------CUCUCGACU-CAUUC-AUCCAA-AUA-CCAAAUGAA-AGAAUUU---------------------------------------------------------------------
AY775970.1/761-570           CAGAAAGAGAGGGAGCUC-CCU--UCAGUCCAAUCAAAGAGAA----UC----AA-U---GAUCCAAUUUGU---------------CUACCGCAU-CAUUC-AGUCAU-UUA-AC-GAGUCU-AGUU-----UGAAU--------------------------------------------------------------
AARH01006065.1/469812-470008 UUGUAAAUUUGGGAGCUU-UCU--UUGGUUCAAAAUGAGGAAA----GA----AA-GUG-GGU-AUACUCGU---------------CUGCUUGUU-CAUGG-AUACCU-CUG-GGU-UGCGC-AGGAUAUA-UUAGU--------------------------------------------------------------
AARH01006065.1/463210-463415 UGAGGCUCAAUGGAGCUC-UCC--CCACUCCAUGCCUGAAAGG----AG----UUCGAU-GGUAGACCAUGG---------------CUGCUAGUU-CAUGA-AUACCC-UUG-GGUGCGCAG-AAUUAGC--AACGGUGCAGGCG------------------------------------------------------
AARH01006065.1/468133-468321 ACCAUUAAAUAGGAGCUU-GCU---CACUCCAGAUCUGAAAGG----AG----GU-GAUAGGA-AACCACUU---------------CUGCUACUU-CAUGA-AUACCC-GUG-GGUGUGCGC-GUAGCCA--UGGUG--------------------------------------------------------------
AASG02000051.1/79825-80017   UUAGGCGUAAUGGUGCUC-UCU--UCACUCCUGUUGUAAAAGG----AG----GU-GAU-GGUAGGCCACGG---------------CUGCUAGUU-CAUGA-AUACCC-CUG-GCUGCGCAG-GAUUAAAGUAAUAA--------------------------------------------------------------
AASG02000051.1/89024-89224   UAUAUAUAUGCGGAGCUC-CUU--UUGGUCCAAAAUGAGGACU----CUGA--AA-GAG-GGCAUAGCAGGU---------------CUGCUAGUU-CAUGG-AUACCU-AUG-GGUUGCAGU-UGGAAACU-AACACA-------------------------------------------------------------
AASG02000051.1/86758-86979   AUGCGUGCAUGGGGGCUC-UCUUCUAGCUCCGAUUCUGAAAGG----AG----AU-GAU-GGUGCGACAUGG---------------CUGCUAGUU-CAUGA-AUACCC-UUU-GGUGCGCAG-GUCAGUU--CUAUGUAGUUGGCAAAUGGCAAUG-------------------------------------------
AY775959.1/657-847           UAUGUACGGAGAGAGCUU-CCU--UGAGUCCAUUCACAGGUCG----UG----AU-AU--GAU-CCAAUUAG---------------CUUCCGACU-CAUUC-AUCCAA-AUA-CCGAGUCUC-ACCA-----AAAUUG-------------------------------------------------------------
AY775965.1/635-823           GAUAAAGAGAGAGAGCUU-CCU--UGAGUCCAUUCACAGGUCG----UG----AU-AU--GAU-CCAAUUAG---------------CUUCCGACU-CAUUC-AUCCAA-AUA-CC-GAGUCA-CCAAAAU--UCGAG--------------------------------------------------------------
AM434575.1/6317-6094         GGAACAGCUGAAGAGCUC-CUU--UUAGUCCAAUAAAGAGGGC----UG----AG-G---GGC-GGCCAGAG---------------CUGCCAUCU-CAUGC-ACUUGG-CUA-UGCUUAUUC-UUUUCUCA-AUCAAUUCGGUUCGAGUAUGGCUGUGGAGUGA-----------------------------------
AP006665.1/46415-46593       AAUAGAAUGAAGGAGCUU-CCU--UCUGCCCAACCAUGGAUAU----AU----GU-GAG-GGA-AGCCUUUG---------------UUG-------CAAAA-AUA-AA-CUA-UUAUUCAUU-CAUUCAU---------------------------------------------------------------------
AY884229.1/1-180             --AUAGAUAAGAGAGCUU-UUU--UCGGUCCACUUAUAGAUAG----UA----AU-AU--GAU-UUAAUUAG---------------UUACCGACU-CAUUC-AUCCAA-AUA-CUGAGUUAU-GAGCUAA---------------------------------------------------------------------
AY884231.1/6-193             ---------AGAGAGCUU-CUU--UCAGCCCACUCGUGGAUAG----GA----CA-AAGGGGU-UGAACUAG---------------CUGCCGACU-CAUUC-AUUCAA-GCA-CUAGUAGAA-AAAAAGGCGAACGGUGUU----------------------------------------------------------
AC012679.5/41369-41166       ACGAUGGAAGUAGAGCUC-CUU--AAAGUUCAAACAUGAGUUG----AG----CA-G---GGUAAAGAAAAG---------------CUGCUAAGC-UAUGG-AUCCCA-UAAGCCCUAAUCC-UUGUAAA--GUAAA--------------------------------------------------------------
AM462844.1/17936-17742       UUGUGGAAGAAGGAGCUC-UCU--UUAGUCCAGUCCGAGACAG----CU----UC-AAG-GCUGAUACGUGG---------------CUGCUGACU-CGUUG-CUUCAA-GAA-CUCAUCACA-UASKCCUG-GAAAA--------------------------------------------------------------
AM457512.2/2227-2039         AGGGGCUUGUGGGAGCUU-CUUU-ACACUCCAGAACUGAAAGG---------------------AGAUACUA---------------CUGCUGGUU-CAUGA-AAACCU-AUG-GCUGCAUUC-UCUAUACU-GAAAU--------------------------------------------------------------
EF203471.1/100-300           UAGAUAUAGAAGGAGAUU-CUU--UCAGUCCAGUCAUGGAUAGAACAAG----AA-GAG-GGU-AGAAACAU---------------CUGCCGACU-CAUCC-AUCCAA-ACA-CUUCUGGUA-AAAAGAA--AAUAGA-------------------------------------------------------------
AP009362.1/69443-69635       GUUUUGAAGGUAGAGCUCUUCU--GAAUUCCAAAGAGGAUCUA----AG----A---G--GGA-AAAUUGAG---------------CUGCUGAUC-UAUGG-AUCCCU-CAA-UCCUAUCUA-UUUU-----CAGAUUA------------------------------------------------------------
AP009362.1/68028-68220       GUUCUGAAUGUAGAGCUUUUCU--GAAUUUCAAAGAGGAUCUG----AG----A---G--GGA-AAAUCGAG---------------CUGCUAAUC-UAUGG-AUCCCU-CAA-ACCUAUCUA-UUCUCAA--AAUAA--------------------------------------------------------------
AASG02006722.1/5309-5498     ---------AAGGAGCUC-CUU--UCAGUCCAAUAUGGAGGGC----UU----AG-AA--GCG-GCAAAGAG---------------CUGCCAUCU-CAUGC-AUUAAGGCAA-UACUUGACA-AGUUUUUCACAGUG--------------------------------------------------------------
AARH01006425.1/130179-130368 GAUUAUGGAGUGGAGCUC-CUU--GAAGUCCAAUAGAAGCUCC----UG----CU-G---GGU-AGAUCGAG---------------CUGCUGAGC-UAUGA-AUCCCA-CAG-CCCUAUCACCAUCAGUC---------------------------------------------------------------------
AARH01008917.1/59768-59958   UAUAACUUAAUGGAGCUU-CCU--CCACUCCAAGUCUGAAAAG----GA----UGUGAG-GGUGUAUCACUG---------------CUGCAAACU-CAUGCAAUUCCC-AUA-AGAAGGCAU-GGUU------------------------------------------------------------------------
AM432013.2/1939-2131         GGGGGAUUGAACAAGCUG-CCU--UCAUCCCAAAAUCAAAAGA----GU----AG-A---AGG-UGUUACAU---------------CUGCUGGUU-CAUGG-AUACCU-UUG-UA-GUGUAC-AGAUUAA--UAUAU--------------------------------------------------------------
AY775971.1/606-797           UAUAUUAAUGGAGAGCUU-CCU--UGAGUCCAUUCACAGGUCG----UG----AU-AU--GAU-CCAAUUAG---------------CUUCCGACU-CAUUC-AUACAA-AUA-CCGAGUCAC-AGAAAUC--UUAA---------------------------------------------------------------
EF091572.1/1-172             ---------AGAGAGCUU-UCU--UUAGUCCACACAUGGGGAA----CG----AU-AG--GGU-UCAAUUUG---------------CUGCCGACU-CAUUC-AUCCAA-AUG-UUGAGGUCU-UGAU-----AAUCG--------------------------------------------------------------
AASG02011104.1/6116-5917     AAUGGUUUAAGAGAGCUC-UCU--UCAGUCCACUCAUGGGCGG----GC----GA-AG--GUUUUGAAUUAU---------------CUGCCGACU-CAUUC-AUUCAA-ACA-CACUAGAAA-AGGGAGCAUUAAAG--------------------------------------------------------------
AM471650.2/47253-47061       AGUGGUUUAAGAGAGCUU-CCU--UCAGUCCACUCAUGGAUGG----GU----UA-GG--GGUUUGGAUUAG---------------CUGCCGACU-CAUUC-AUUCAA-ACA-CAGUAGAAU-GGAA-------AUG--------------------------------------------------------------
AC069551.4/12020-12227       GAAGAAGAGGAAGAGCUC-CUU--GAAGUUCAAUGGAGGGUUU----AG----CA-GG--GUG-AAGUAAAG---------------CUGCUAAGC-UAUGG-AUCCCA-UAA-GCCUUAUCA-AAUUCAA--UAUAAUUGAU---------------------------------------------------------
AC005397.3/28936-28710       GUGUAACAGAAGGAGCUC-CCU--UCCUCCAAAACGAAGAGGA----CAAGAUUU-GA--GGA---------ACUAAAAUGCAGAAUCUAAGAGUU-CAUGU-CUUCCU-CAU-AGAGAGUGC-GCGGUGUU-AAAAG--------------------------------------------------------------
AASG02019405.1/2563-2341     AGCAUUUUAAGAGAGCUU-UCU--UCAGUCCACUCAUGGGUGG----CG----GU-AG--GAU-UUAAUUAG---------------CUGCCGACU-CAUUC-AUCCAA-AUA-CUGAGUUAA-AAAG-----UUCAGAAAACAAAAGGGGCGGGUGCUGUAGAAAAG--------------------------------
AASG02000468.1/24439-24641   AAUGGUGUGAGAGAGCUU-CCU--UCAGCCCACUCAUGGAUGG----GGGUA-AA-GG--GGC-UGAAGUAU---------------CUGCCGACU-CAUUC-AUUCAA-GCA-CUAGUAGAC-AAAGGGA--UUGGUACU-----------------------------------------------------------
CU459032.2/137942-137752     AAUAGAUGAAGAGAGCUU-CCU--UCAGUCCACUCAUGGAAGG----GU----AA-GG--GGUUUGAAUUAC---------------CUGCUGACU-CAUUG-AUUCAA-ACA-CAAUAGACA-AUUAUGG---------------------------------------------------------------------
AASG02012489.1/1166-1359     GCUAAAGGAGUGGAGCUC-CUU--GAAGUCCAAUAGAGGAUCU----UG----AU-G---GGU-AGAUUGAG---------------CUGCUGAGC-UAUGG-AUCCCA-CAG-CCCUAUAAG-CAGAGAU--UAUAA--------------------------------------------------------------
AY775966.1/585-776           UAUAUUAAGGGAGAGCUU-CCU--UGAGUCCAUUCACAGGUCG----UG----AU-AU--GAU-UCAAUUAG---------------CUUCCGACU-CAUUC-AUCCAA-AUA-UCGAGUCAC-CAAA-----AUUUG--------------------------------------------------------------
AY775967.1/620-808           UAGUUAGAAAGAGAGCUU-CCU--UGAGUCCAUUCACAGGUCG----UG----AU-AU--GAU-CCAAUUAG---------------CUUCCGACU-CAUUC-AUCCAA-AUA-CCGAGUCAC-CAAAAUU--CAAA---------------------------------------------------------------
AY775962.1/657-847           UAUGUAUGGAGAGAGCUU-CCU--UGAGUCCAUUCACAGGUCG----UG----AU-AU--GAU-CCAAUUAG---------------CUUCCGACU-CAUUC-AUCCAA-AUA-CCGAGUCUC-ACCAAAAU-UCUAA--------------------------------------------------------------
AY775957.1/547-737           UAAAUGUAGAGAGAGCUU-CCU--UGAGUCCAUUCACAGGUCG----GA----UA-U---GAU-CCAAUUAG---------------CUUCCGACU-CAUUC-AUCCAA-AUA-CCGAGUCGC-CAAAAUU--CAAA---------------------------------------------------------------
AY775958.1/577-766           UAUAUGUAGAGAGAGCUU-CCU--UGAGUCCAUUCACAGGUCG----UG----AU-AU--GAU-CCAAUUAG---------------CUUCCGACU-CAUUC-AUCCAA-AUA-CCGAGUCGC-UAAAAUC---------------------------------------------------------------------
AY775974.1/600-788           UAUAUCGAGAGAGAGCUU-CCU--UGAGUCCAUUCACAGGUCG----UG----AU-AU--GAU-CCAAUUAG---------------CUUCCGACU-CAUUC-AUCCAA-AUA-CCGAGUCAC-CAAAAUU--CGAA---------------------------------------------------------------
AY775961.1/595-786           UAUAUGUAGAGAGAGCUU-CCU--UGAGUCCAUUCACAGGUCG----UG----AU-AU--GAU-CCAAUUAG---------------CUUCCGACU-CAUUC-AUCCAA-AUA-CCGAGUCGC-CAAAAUU--CGAA---------------------------------------------------------------
AY775964.1/559-748           UAUAUAGAUAGAGAGUUU-CCU--UGAGUCCAUUCACAGGUCG----UG----AU-AU--GAU-CCAAUUAG---------------CUUCCGACU-CAUUC-AUCCAA-AUA-CCGAGUCAU-CAAA-----AUUUC--------------------------------------------------------------
AM427583.2/12150-11957       GGUUUUGGAGUGGAGCUC-CUU--GAAGUCCAAUAGAGGGUCU----UA----CU-G---GGU-AGAUUGAG---------------CUGCUGACU-UAUGG-AUCCCA-CAG-CCCUAUCCC-GUCA-----AUGGGGG------------------------------------------------------------
AM454957.2/557-754           GGGGGUUUAUGGGAGCUC-CUUU-ACGCUCCAGUUCUGAAAGG----AG----AU-GAU-GGU-AUCCACAG---------------CUGCUGGUU-CAUGA-GUACCU-AUG-GCUGCACAA-UAUAUAUA-GCAAU--------------------------------------------------------------
AM457512.2/3648-3453         UGGGGUUCAAUGGAGCUC-UCU--UUGCUCCUAGCUAGAAGGA----GA----UG-AG--GGUAUGCCACAG---------------CUGCCAGUU-CAUGA-AUGCCC-AUG-GAUGCUCAA-GUUCUAG--CAUAU--------------------------------------------------------------
EU549330.1/124-324           UAGAUAUAGAAGGAGAUU-CUU--UCAGUCCAGUCAUGGAUAGAAAAAG----AA-GAG-GGU-AGAAAUAU---------------CUGCCGACU-CAUCC-AUCCAA-ACA-CUCGUGGUA-GAGAAAC--GAUAA--------------------------------------------------------------
AY551216.1/17-209            GAUGAAGAAGAAGAGCUC-CCUU-UCGAUCCAAUUCAGGAGAG----GA----AG-U---GGUAGGAUGCAG---------------CUGCCGGUU-CAUGG-AUACCU-CUG-GA-GUGCAG-GGCAAAU---------------------------------------------------------------------
#=GC SS_cons                 ::::::::::::<<<<<<.<<-..-<<<<<<<------<----....--....--.--..---.--------...............<<-<<<---.<<<<-.---<__.___._________._______.._____..............................................................
#=GC RF                      uauauagaaAggGAGCUc.CCU..UcAgUCCAaUcauGGaugG....ug....au.ga..GGU.ugAauuAG...............CUGCcGAcU.CAUgc.AUcCAa.aUA.ccguuucaa.aaaaaau..aaaAg..............................................................

AP001800.2/28917-28720       ----------------UAGCGAAGCUUA----------GCAGAUGAGUGAAUGAAGCGGGAGGUAA-C----------GUUCCGAU----CUCGCGCCGUCUUUGCUUGGACUG---AAGGGUGCUCCCUCCUCCUCGAUC
AP001800.2/44264-44453       -------------------CUUGCACUU----------GCAUGGGUUUGCAUGACCCGGGAGAUGA-A----------CCCACCAU----UGUCUUCCUCUUAUGCUUGGAUUG---AAGGGAGCUCUACACCUCUCUCUC
AY884232.1/7-186             -------------------AGGUUAAGC----------UUGGCCACUUGCAUGGUGUGGGAGCAAC-U----------CCUUCCGC----AUGCUUUGCUCGCCCAUUGGACUG---AAGGGAGCUCCUGGUUUU------
CU406292.1/220-493           AUGAUGGAGUACUCGUUGUUGGGAUAGG----------CUUAUGGCUUGCAUGCCCCAGGAGCUGC-A----------UCAACCCU-------ACAUGGACCCUCUUUGGAUUG---AAGGGAGCUCUGCAUCUUUUGUCA
AY922324.1/461-652           -------------------CUAGACUCG----------UUAAAUGAAUGAAUGAUGCGGUAGACAA-A----------UUGGAUCA------UUGAUUCUCUUUGAUUGGACUG---AAGGGAGCUCCCUCUCUCUUUUGU
AP002745.2/122724-122526     -------------------UGCUGUAGGCCUGCACUU-GCAUGGGUUUGCAUGACCCGGGAGAUGA-A----------CCCACCAU----UGUCUUCCUCUAUUGAUUGGAUUG---AAGGGAGCUCCACAUCUCUCUCGU
AP002745.2/130424-130234     -------------------GUAGGCCUGCACUU-----GCAUGGGUUUGCAUGACCUGGGAGAUGA-A----------CCUGCCAU----UGUGUUCCUCUAUUGAUUGGAUUG---AAGGGAGCUCCGGCUACACCUAUC
AY884228.1/1-188             ----------------AUGGCUGCUAUU----------GUGAAUGUGUGAAUGAUGCGGGAGAUAA-A----------UUUCAUCC-----UUUUCUUCUCUGUGCUUGGACUG---AAGGGAGCUCCCUUUAAU------
AM474694.1/394-202           ----------------CAAUG-------UCCCCU----UUAAGGGUUUGCAUGAAUGGGGAGAUGA-G----------GUUUCCUU-------CUUGACUUGUAAUUUGGUUUG---AAGGGAGCUCUGAUGACCCUUCUA
AY728415.1/7-185             -------------------GGUUUAAGC----------UUGGCCAGGUGCAUGGUGUGGGAGCAAC-U----------CCUUCCGC----AUGCUUUGUUCGCCCAUUGGACUG---AAGGGAGCUCCUGGUUUU------
AY551214.1/3-192             -----------------AAAGAGAUAGG----------CUUGUGGUUUGCAUGACCAAGGAGCCGA-A----------UCAACUCC------UUGCUGACCACUCUUUGGAUUG---AAGGGAGCUCUGCAUCUUGAUCCC
AM458581.1/27231-27413       -------------------CC-------A---------GUAAAUGAUUGAAUGAUGCGGGAGACAA-A----------UUGGAUCU------UAAGCUCCCUGUGCUUGGACUG---AAGGGAGCUCCCUUCACUGCAAUC
AK064418.1/273-459           -----------------UGUAUCUCUUG----------GUAGCGGACUGGAUGACGCGGGAGCUAAAA----------UUUAGCUC------UGCGCCGUUUGUGGUUGGACUG---AAGGGUGCUCCCUUGCUC------
AY775975.1/842-1033          -------------------CUAAACUCG----------UUAAAUGAAUGUAUGAUGCGGUAGACAA-A----------UUGGGUUA------UUGAUUCUCUAUGAUUGGACUG---AAGGUAGCUCCCUCCCCUUUUUGA
AARH01017144.1/4716-4901     -----------------CGAAGGAUAGG----------UUUGCGGCUUGCAUAUCUCAGGAGCUUU-A----------UUGCCUAA------UGUUAGAUCCCUUUUUGGAUUG---AAGGGAGCUCUAAACCCAUAACCC
CR962124.2/16450-16257       ----------------AACAUAUACUCA----------UCAAAUGAGUGAAUGAUGCGGGAGACAA-A----------UUGAAUCU------UAAGUUUCCUAUACUUGGACUG---AAGGGAGCUCCCUUUUCUUCCUUU
AASG02014601.1/2536-2726     -------------------UAAGAGAUGU---------CUUUUUGAUCCAACGAAGCUGGAGCUGU-G----------UUCAGUUA-------UGGCUGUCAUGUCUUGGACUG---AAGGGAGCUCCCUCCAAUUCUUAC
AARH01000160.1/529592-529782 ----------------UACCC-------A---------GUAAAUGAGUGAAUGAUGCGGGAGACAA-A----------UUGAAUCC------UAAGCUUCCUGUACUUGGACUG---AAGGGAGCUCCCUUUCCUUUUAUA
AY728413.1/1-192             ----------------UCUUUUGCUACU----------GUGAUUGUGUGAAUGAUGCGGGAGAUAA-U----------UUUACAUC----CCCUCUUUUUCUGUGCUUGGACUG---AAGGGAGCUCCUUCC---------
AB005233.1/55604-55413       -----------------GUUCUCAUAUG----------GUAAAUGAAUGAAUGAUGCGAGAGACAA-A----------UUGAGUCU------UCACUUCUCUAUGCUUGGACUG---AAGGGAGCUCCCUAUUUUUAUCUU
AY775970.1/761-570           ----------------UUGGGUGACUCG----------GUAUGUGGAUGAAUGAGUCGGAAGCUAA-U----------UGGAUCAU------AUCACGACCUGUGAAUGGACUC---AAGGAAGCUCUCUCUAUAUAUUUU
AARH01006065.1/469812-470008 ----------------UAGGGCUACAGC----------UUAAGGGUUUGCAUGGCCAAGGAGACGU-U----------GCCUGCCU------UCUCCUUUCGUUUCUUGGAUUG---AAGGGAGCUCCUACAUGUAUCUCA
AARH01006065.1/463210-463415 ----------------AAGUUGCGCAGG----------CUAAGGGUCUGCAUGACCUAGGAGACGU-G----------GUUACCCU-------GACCCUUUUUGUAUUGGAGUG---AAGGGAGCUCGAUGGUCUUUCACC
AARH01006065.1/468133-468321 -----------------AGCUGCGCAGG----------CUAAGGGUCUGCAUGUGCUAGGAGAUGU-G----------GUUGCCUU-------GAUCUUUUUGGUCUUGGGGUG---AAGGGAGCUCCUAUAGUC------
AASG02000051.1/79825-80017   ----------------AGUUUGCGCAGG----------CUAAGGGUUUGCAUGACCUGGGAGACGU-G----------GUUACCUU-------CUUCUUUUUUAUAUUGGAGUG---AAGGGAGCUCUGUUGUCU------
AASG02000051.1/89024-89224   ----------------UUUUUGCGCAGC----------UUAAGGGUUUGCAUGACCUGGGAGACGU-G----------UUUCCCUU-------CCCCUUUCCUUAAUUGGAUUG---AAGGGAGCUCCUCCUGUUUAUUUG
AASG02000051.1/86758-86979   ----------------GUGAUGCGCAGC----------CUAAGAGUAAGCAUCUGCUGGGAGCUCU-G----------UUUACCUU---UGAUAUUCUUUUUGGUAUUGGGGCG---AAGGAAGCUCCUAUAUUUACAUGU
AY775959.1/657-847           ----------------GAACAAGACUUG----------UUAAAUGAAUGAAUGAUGCGGUAGACAA-A----------UUGGAUCA------UUGAUUCUCUUUGAUUGGACUG---AAGGGAGCUCCCUUUCUUCUU---
AY775965.1/635-823           -------------------CAAGACUCG----------UUAAAUGAAUGAAUGAAGCGGUAGACAA-A----------UUGGGUCA------UUGAUUCUCUAUGAUUGGACUG---AAGGGAGCUCCCUCUAUAUUU---
AM434575.1/6317-6094         ----------------CAAAUGCUAAGU----------UUAGCCUGAUGCAUGACAUGGGAGCAAC-U----------CCUCCGCA-----CGCUUUGCCCACUCAUUGGACUG---AAGGGAGCUCCCAGGGCAGAUCUC
AP006665.1/46415-46593       ----------------------------AU--------AUAAUUAUGUGAAUGAAGUGGAAGAUGU-A------UAUUUUGCAGCC------UUCUUUGGCUAUGUUUGGACUG---AAGGGAGCUCCUUCUUUCUGUUGC
AY884229.1/1-180             -------------------GAUUACCCA----------GUAAAUGAAUGAGUGAUGCGGGAGACAA-A----------UUAAAUCU------UAAACUUCCUAUCAUUGGACUG---AAGGGAGCUCCCUUUACU------
AY884231.1/6-193             ----------------UCUUUUGCUACU----------GUGAUUGUGUGAAUGAUGCGGGAGAUAA-U----------UUUCCAUC----CUCUCCUUUUCUGUGCUUGGACUG---AAGGGAGCUCCUUCC---------
AC012679.5/41369-41166       ----------------AAAGGAUUUGGU----------UAUAUGGAUUGCAUAUCUCAGGAGCUUUAA----------CUUGCCCUUUAAUGGCUUUUACUCUUCUUUGGAUUG---AAGGGAGCUCUACAUCUUCUUUCA
AM462844.1/17936-17742       -------------------GAUGGAUGG----------UUUUUUGAUCCAACGAUGCAGGAGCUGC-G----------UUCAGUUA-------UGGCUGUCACGUCUUGGACUG---AAGGGAGCUCCCUUGUAUUCCACA
AM457512.2/2227-2039         ----------------UUUGUAUACAAA----------CUAUGGGUUUGCAUGAMCUUGGAGAAGU-G----------UUUGCUUU------UAUCUUUUCUGGCCUUGGAGUG---AAGGGAGCUCUCAUAACCGAUCUA
EF203471.1/100-300           ----------------UUUUAUACCACA----------GUGGCUGUGUGAAUGAUGCGGGAGAUGU-U----------UUCAUCUC-------UCUUUAUCUGUGUUUGGACUG---AAGGGAGCUCCUUCUUUAUCUACA
AP009362.1/69443-69635       ----------------AUUUUAGAUAGG----------UUUGUGGUUUGCAUAUAUCAGGAGCUGC-A----------UUUACUCU-------UCUAGGAUCUUUAUUGGAAAG---AAGGGAGCUCUACACUUGAUAACC
AP009362.1/68028-68220       -----------------UUUUAGAUAGG----------UUUGUGGUUUGCAUAUAUCAGGAGCUUC-A----------UUUACUCU-------UCUAGGAUCCUUAUUGGAAUG---AAGGGAGCUCUACGUUUGAUAACC
AASG02006722.1/5309-5498     ----------------AAAAUCUCAAGU----------UUGGCCUGGUGCAUGGUGUGGGAGCAAC-U----------CCUUCCCU------CCUUCCCCCACCCAUUGGACUG---AAGGGAGCUCCUUCUUUCAUUUUG
AARH01006425.1/130179-130368 -----------------AUUUUGAUGGG----------CCUGCGGCUUGCAUAUCUCAGGAGCUUU-A----------UUACCUAA------UGUUAGAUCUUUUUUUGGAUUG---AAGGGAGCUCUAAACCUUUGAUCU
AARH01008917.1/59768-59958   -----------------UUUAUUGCAAU----------CUAAGGGCCUGCAUGAAUCUGAAGAAGU-G----------ACUGUCUA------GUUUUUUCUGGAUAUUGGAGAGAUCAAGGGAAAUCCACACACACUU---
AM432013.2/1939-2131         ----------------CUAAUGUCCACU----------UUAAGGGUUUGCAUGAAUGGGGAGAUGA-G----------GUUGCCUU-------CUUCACUUAUAAUUUGGUUUG---AAGGGAGCUCUGAUAGUCCUUCUC
AY775971.1/606-797           -------------------CUGGACUCG----------GUAAAUGAAUGAAUGAUGCUGUAGACAA-A----------UUGGAUCA------UUGAUUCUCUCUGAUUGGACUG---AAGGGAGCUCCCUCUCUUUAGGUA
EF091572.1/1-172             ----------------AGUGCCACCUCA----------GCAACUGAGUGAAUGAAGCGGGAGUACAAG----------UUGAGUCU------UGAGCUUCCUGUACUUGGACUG---AAGGGAGCUCC-------------
AASG02011104.1/6116-5917     ----------------AUAGCUGCUAUU----------GUGAAUGUGUGAAUGAUGCGGGAGAUAA-A----------UUUCAUAC-----UUCUCUUCUCUGUGCUUGGACUG---AAGGGAGCUCCCUUUAGCUGUAUC
AM471650.2/47253-47061       ----------------GAGUUUACUACU----------GUGAAUGUGUGAAUGAUGCGGGAGGUAA-A----------UUUCAUCC-----UUUUCUUGUCUGUGCUUGGACUG---AAGGGAGCUCCCUUCUACUGUUUU
AC069551.4/12020-12227       ----------------GAUAAGGUUUUU----------UUUAUGGAUGCCAUAUCUCAGGAGCUUUCA----------CUUACCCCUUUAAUGGCUUCACUCUUCUUUGGAUUG---AAGGGAGCUCUUCAUCUCUCCAUC
AC005397.3/28936-28710       ----------------CUUGAAGAAAGCACACUU----UAAGGGGAUUGCACGACCUCUUAGAUUC-UCCCUCUUUCUCUACAUAU---CAUUCUCUUCUCUUCGUUUGGAUUG---AAGGGAGCUCCUUUUCUUCUUCUC
AASG02019405.1/2563-2341     ----------------AAGGUUUACCCA----------GUAAAUGAGUGAAUGAUGCGGGAGACAA-A----------UUGAAUCU------UAAGCUUCCUGUACUUGGACUG---AAGGGAGCUCCCUUUACUGUUAUU
AASG02000468.1/24439-24641   ----------------GUUUUAGCUACU----------GUGAUUGUAUGAAUGAUGCGGGAGAUAA-U----------UUUGCAUC-----CCUCUUUUUCCGUGCUUGGACUG---AAGGGAGCUCCUUCUUUCUACAGC
CU459032.2/137942-137752     ----------------GGUUAUGCUAUU----------GUGAAUGUGUGAAUGAUGCAGGAGGUGA-A----------UUUCUUCC-------UUUUCUUCUUUGCUUGGACUG---AAGGGAGCUCCCUUUUUCUAUUUA
AASG02012489.1/1166-1359     -----------------UUUUGGAUAGG----------CUUGUGGCUUGCAUAUCUCAGGAGCUUC-A----------UUACCUUG------UAUUAGAUCCUUGUUUGGAUUG---AAGGGAGCUCUACAUCUCUCUCUC
AY775966.1/585-776           -----------------AACUAGACUCG----------UUAAAUGAAUGAAUGAUGCGGUAGACAA-A----------UUGGAUCA------UUGAUUCUCUCUGAUUGGACUG---AAGGGAGCUCCCUCUCUUUAGGUA
AY775967.1/620-808           -------------------CUAGACUCG----------UUAAAUGAAUGAAUGAUGCGGUAGACAA-A----------UUGGGUCA------UUGAUUCUCUUUGAUUGGACUG---AAGGGAGCUCCCUCCCUCUUU---
AY775962.1/657-847           -------------------CAAGACUUG----------UUAAAUGAAUGAAUGAUGCGGUAGACAA-A----------UUGGAUCA------UUGAUUCUUUUUGAUUGGACUG---AAGGGAGCUCCCUUUCUUCUU---
AY775957.1/547-737           -------------------UUAGACUCG----------UUAAAUGAAUGAAUGAUGCGGUAGACAA-A----------UUGGAUCA------UUGAUUCUCUUUGAUUGGACUG---AAGGGAGCUCCCUCUCUCUUCUGU
AY775958.1/577-766           ----------------GAACUAGACUCG----------UUAAAUGAAUGAAUGAUGCGGUAGACAA-A----------UGGAUCAU-------UGAUUCUCUUUGAUUGGACUG---AAGGGAGCUCCCUCUCUCUUCUGU
AY775974.1/600-788           -------------------CUAGACUCG----------UUAAAUGAAUGAAUGAUGCGCUAGACAA-A----------UUGGAUCA------UUGAUUCUCUUUGAUUGGACUG---AAGGGAGCUCCCUUCCUUUUU---
AY775961.1/595-786           -------------------CUAGACUCG----------UUAAAUGAAUGAAUGAUGCGGUAGACAA-A----------UUGGAUCA------UUGAUUCUCUUUGAUUGGACUG---AAGGGAGCUCCCUCUCUCUUCUGU
AY775964.1/559-748           ----------------AAUCUAAACUCG----------UUAAAUGAAUGAAUGAUGCGGUAGACAA-A----------UUGGAUCA------UUGAUUCUCUUUGAUUGGACUG---AAGGGAGCUCCCUCUCUUUUU---
AM427583.2/12150-11957       ----------------GCAUUGGAUAGG----------CUUGUGGCUUGCAUAUCUCAGGAGCUGC-A----------UUAUCCAA------GUUUAGAUCCUUGUUUGGAUUG---AAGGGAGCUCUACACCUCUCUCUC
AM454957.2/557-754           ----------------GUUGUGUGCAAA----------CUAUGGGUGUGCAUGACCUCGGAGAAGU-G----------GUUGCCUU-------GAUCUUUCUGGCCUUGGAGUG---AAGGGAGCUCUCAUAACCCUUCUA
AM457512.2/3648-3453         ----------------GGUGAGAGCAAG----------CUAUGGGUGAGCAUGACUUGGGAGAUGA-G----------GGUACUUU-------GAUCUUUCUGGUAUUGGAGUG---AAGGGAGCUCUAUGGUUCUUACUU
EU549330.1/124-324           ----------------AUUUAAACCGCA----------GUGACUGUGUGAAUGAUGCGGGAGAUAU-U----------UUUGAUCC------UUCUUUAUCUGUGUUUGGACUG---AAGGGAGCUCCUUCUUUUUCUACA
AY551216.1/17-209            -------------------AG-------UCCUACCCUUUCAUGGGUUUGCAUGACUCGGGAGAUGA-A----------CCCGCCAU----UGUCUUCCUCUAUUGAUUGGAUUG---AAGGGAGCUCCUCUAGCUACAUCU
#=GC SS_cons                 ................____________..........______>---->>>>--->>>->>----.-..........--------......-------->------>>>>>>>...-->>>>>>>>::::::::::::::
#=GC RF                      ................auuuuagacAgg..........uUAAauGuuUGcAUGAugCgGGAGAUaa.a..........UUuacucu......UuuuuUuUCuuUgaUUGGAcUg...AAGGgAGCUCCcuuuuUuuuUuuc
//
