INFERNAL1/a [1.1.4 | Dec 2020] NAME P26 ACC RF00630 DESC Pseudomonas sRNA P26 STATES 207 NODES 55 CLEN 66 W 82 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:51:37 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 27 EFFN 4.650513 CKSUM 1017303158 NULL 0.000 0.000 0.000 0.000 GA 36.00 TC 36.00 NC 35.90 EFP7GF -11.7084 0.71920 ECMLC 0.64534 -8.40987 0.81468 1600000 461865 0.002598 ECMGC 0.48949 -12.95284 -1.84391 1600000 91970 0.004349 ECMLI 0.58282 -6.84215 1.99791 1600000 207374 0.005787 ECMGI 0.53539 -8.75768 0.96057 1600000 72734 0.005499 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 82 101 -7.774 -7.981 -0.030 -6.395 IL 1 1 2 1 4 1 20 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 20 82 101 -8.745 -0.012 -7.399 0.399 -0.966 0.108 0.127 D 4 2 3 5 3 0 14 81 100 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 19 81 100 -8.745 -0.012 -7.399 0.533 -0.357 -0.410 0.028 D 7 5 3 8 3 0 14 80 99 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 18 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 18 80 99 -8.745 -0.012 -7.399 -0.322 0.787 -0.778 -0.165 D 10 8 3 11 3 0 13 79 98 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 17 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 17 79 98 -8.745 -0.012 -7.399 -0.658 0.393 -1.348 0.731 D 13 11 3 14 3 0 12 78 97 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 17 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 16 78 97 -8.745 -0.012 -7.399 -0.978 -0.868 -1.752 1.405 D 16 14 3 17 3 0 12 77 96 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 16 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 15 77 96 -8.745 -0.012 -7.399 -0.833 -1.251 -1.542 1.420 D 19 17 3 20 3 0 11 76 95 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 15 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - g - - - ML 21 20 3 23 3 1 14 76 95 -8.745 -0.012 -7.399 0.053 -0.414 0.716 -0.813 D 22 20 3 23 3 0 10 75 94 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 14 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - a - - - ML 24 23 3 26 3 1 13 75 94 -8.745 -0.012 -7.399 0.248 0.164 -0.347 -0.142 D 25 23 3 26 3 0 10 74 93 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 13 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 12 74 93 -8.745 -0.012 -7.399 -1.314 -2.142 1.395 -0.433 D 28 26 3 29 3 0 9 72 92 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 12 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 1 12 73 92 -8.745 -0.012 -7.399 -0.123 -0.818 -0.560 0.877 D 31 29 3 32 3 0 8 71 91 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 12 75 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - u - - - ML 33 32 3 35 3 1 11 72 91 -8.745 -0.012 -7.399 -0.778 0.148 -0.777 0.787 D 34 32 3 35 3 0 8 70 90 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 11 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - u - - - ML 36 35 3 38 3 1 10 71 90 -8.745 -0.012 -7.399 -0.586 -0.167 -0.916 0.936 D 37 35 3 38 3 0 8 69 89 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 10 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - g - - - ML 39 38 3 41 3 1 9 70 89 -9.095 -0.011 -7.413 -0.026 0.026 0.278 -0.346 D 40 38 3 41 3 0 7 69 88 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 9 70 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 70 - U - - MR 42 41 3 44 2 1 8 69 88 -9.253 -0.002 -2.951 -2.712 -3.730 1.865 D 43 41 3 44 2 0 7 68 87 -4.432 -0.068 IR 44 44 3 44 2 1 8 70 89 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 45 44 3 46 120 0 7 68 87 [ BEGL 16 ] - - - - - - S 46 45 1 47 4 0 0 39 58 -0.104 -4.221 -6.716 -7.356 [ MATP 17 ] 14 40 C G - - MP 47 46 1 51 6 2 2 39 58 -9.424 -9.363 -0.017 -8.140 -8.419 -8.814 -4.705 -4.675 -4.415 -0.777 -3.074 -4.850 3.282 -3.871 -4.425 -0.605 -4.735 -2.596 1.881 -4.759 -0.721 -3.235 ML 48 46 1 51 6 1 1 38 56 -6.982 -7.328 -1.216 -0.971 -7.178 -4.707 -0.283 0.767 -1.006 -0.032 MR 49 46 1 51 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 1 51 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 39 A U - - MP 53 52 6 57 6 2 2 37 56 -9.451 -9.390 -0.017 -8.167 -8.446 -8.841 -3.879 -2.914 -3.939 3.109 -4.481 -5.105 -0.150 -4.177 -3.905 1.666 -4.424 0.255 0.217 -4.250 -2.074 -2.809 ML 54 52 6 57 6 1 1 36 54 -6.682 -7.028 -0.843 -1.437 -6.878 -4.407 0.939 -0.807 -0.546 -0.276 MR 55 52 6 57 6 1 1 36 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 38 G C - - MP 59 58 6 63 6 2 2 35 54 -9.480 -9.420 -0.016 -8.196 -8.476 -8.871 -5.029 -3.388 -4.998 -0.028 -5.419 -4.922 0.200 -5.357 -4.738 3.630 -5.013 -1.097 -1.116 -4.618 -2.736 -3.916 ML 60 58 6 63 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 37 C G - - MP 65 64 6 69 6 2 2 33 52 -9.480 -9.420 -0.016 -8.196 -8.476 -8.871 -5.053 -5.074 -4.672 -1.172 -3.240 -5.029 3.537 -4.075 -4.704 -1.017 -4.964 -3.045 1.004 -5.058 -0.246 -3.505 ML 66 64 6 69 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 36 C G - - MP 71 70 6 75 4 2 2 31 50 -7.774 -7.981 -0.030 -6.395 -5.225 -5.262 -4.786 -1.376 -3.309 -5.099 3.604 -4.164 -4.833 -1.236 -5.059 -3.259 0.981 -5.205 -0.983 -3.633 ML 72 70 6 75 4 1 1 32 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 32 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 31 50 -4.568 -4.250 -2.265 -0.520 IL 75 75 5 75 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - u - - - ML 77 76 6 79 3 1 1 28 47 -8.745 -0.012 -7.399 -0.868 0.135 -1.010 0.893 D 78 76 6 79 3 0 0 28 46 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - G - - - ML 80 79 3 82 3 1 1 27 45 -8.745 -0.012 -7.399 0.585 -2.302 1.003 -1.766 D 81 79 3 82 3 0 0 26 45 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - A - - - ML 83 82 3 85 3 1 1 26 44 -9.095 -0.011 -7.413 1.134 -0.755 -0.957 -0.519 D 84 82 3 85 3 0 0 25 43 -5.620 -0.734 -1.403 IL 85 85 3 85 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 35 - A - - MR 86 85 3 88 3 1 1 25 43 -9.095 -0.467 -1.863 1.283 -0.454 -1.426 -1.106 D 87 85 3 88 3 0 0 24 42 -6.390 -1.568 -0.620 IR 88 88 3 88 3 1 1 26 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 34 - a - - MR 89 88 3 91 3 1 1 24 42 -8.643 -0.015 -6.961 0.730 -0.628 -1.130 0.307 D 90 88 3 91 3 0 0 22 40 -8.636 -2.947 -0.205 IR 91 91 3 91 3 1 1 25 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 33 - a - - MR 92 91 3 94 5 1 1 23 41 -1.657 -1.150 -7.217 -7.429 -2.185 0.917 -0.808 -0.938 0.026 D 93 91 3 94 5 0 0 22 40 -2.771 -1.193 -4.536 -5.966 -1.486 IR 94 94 3 94 5 1 1 23 41 -3.615 -0.194 -7.126 -5.294 -6.400 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 31 G C - - MP 95 94 3 99 6 2 2 22 40 -9.228 -9.168 -0.019 -7.944 -8.224 -8.619 -4.101 -2.870 -4.050 0.641 -4.308 -4.463 0.272 -4.358 -4.066 3.332 -4.408 -0.557 0.574 -3.935 -1.747 -2.973 ML 96 94 3 99 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 3 99 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 3 99 6 0 0 17 35 -11.223 -9.921 -5.718 -6.400 -6.418 -0.065 IL 99 99 5 99 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 30 c g - - MP 101 100 6 105 4 2 2 20 38 -0.990 -7.453 -1.564 -2.712 -3.439 -3.296 -3.447 1.277 -2.641 -4.176 2.733 -3.246 -3.435 0.730 -3.907 -1.219 1.576 -3.640 -0.302 -2.325 ML 102 100 6 105 4 1 1 18 36 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 4 1 1 18 36 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 104 100 6 105 4 0 0 17 35 -3.804 -6.348 -1.739 -0.698 IL 105 105 5 105 4 1 1 19 37 -3.636 -2.957 -0.355 -6.805 0.000 0.000 0.000 0.000 IR 106 106 6 106 3 1 1 19 37 -1.643 -0.665 -4.343 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - u - - - ML 107 106 6 109 3 1 1 16 34 -8.302 -0.016 -6.957 0.139 -0.246 -0.932 0.615 D 108 106 6 109 3 0 0 14 33 -8.550 -4.063 -0.093 IL 109 109 3 109 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - u - - - ML 110 109 3 112 3 1 1 14 33 -8.302 -0.016 -6.957 -0.172 -0.048 -1.323 0.804 D 111 109 3 112 3 0 0 13 32 -8.550 -0.951 -1.058 IL 112 112 3 112 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - u - - - ML 113 112 3 115 3 1 1 13 31 -8.569 -0.014 -7.223 0.413 -0.432 -0.861 0.461 D 114 112 3 115 3 0 0 12 31 -7.669 -2.052 -0.408 IL 115 115 3 115 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - a - - - ML 116 115 3 118 2 1 1 1 1 * 0.000 0.939 -0.812 -0.983 0.011 D 117 115 3 118 2 0 0 0 0 * 0.000 IL 118 118 3 118 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 34 ] - - - - - - E 119 118 3 -1 0 0 0 0 0 [ BEGR 35 ] - - - - - - S 120 45 1 121 3 0 0 41 60 -8.745 -0.012 -7.399 IL 121 121 2 121 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 41 - A - - - ML 122 121 2 124 3 1 1 41 60 -8.745 -0.012 -7.399 1.782 -3.005 -1.825 -2.690 D 123 121 2 124 3 0 0 40 59 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 42 - U - - - ML 125 124 3 127 5 1 1 40 59 -4.571 -0.080 -7.610 -7.823 -8.714 -1.154 -0.917 -1.058 1.345 D 126 124 3 127 5 0 0 39 57 -4.959 -0.803 -4.221 -2.596 -2.508 IL 127 127 3 127 5 1 1 40 59 -2.637 -0.412 -4.316 -6.148 -5.421 0.000 0.000 0.000 0.000 [ MATP 38 ] 44 69 G C - - MP 128 127 3 132 6 2 2 39 58 -9.480 -9.420 -0.016 -8.196 -8.476 -8.871 -5.732 -3.639 -5.956 -0.503 -6.920 -5.184 -1.920 -6.333 -5.016 3.781 -5.301 -0.466 -2.202 -5.148 -4.022 -4.827 ML 129 127 3 132 6 1 1 38 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 3 132 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 3 132 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 45 68 G C - - MP 134 133 6 138 6 2 2 37 56 -9.480 -9.420 -0.016 -8.196 -8.476 -8.871 -6.211 -3.823 -6.630 -0.858 -7.241 -5.235 -2.245 -6.852 -5.172 3.855 -5.432 -1.612 -2.606 -5.392 -4.393 -5.488 ML 135 133 6 138 6 1 1 36 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 46 67 C G - - MP 140 139 6 144 6 2 2 35 54 -9.480 -9.420 -0.016 -8.196 -8.476 -8.871 -6.277 -6.329 -5.646 -2.502 -4.093 -5.829 3.860 -5.091 -5.816 -2.419 -5.825 -4.373 -0.827 -6.227 -1.907 -4.621 ML 141 139 6 144 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 47 66 u g - - MP 146 145 6 150 6 2 2 33 52 -9.480 -9.420 -0.016 -8.196 -8.476 -8.871 -4.973 -5.042 -4.601 -1.280 -3.213 -4.951 1.105 -4.041 -4.650 -1.167 -4.908 -3.137 2.316 -4.994 2.888 -3.489 ML 147 145 6 150 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 48 65 G C - - MP 152 151 6 156 6 2 2 31 50 -9.480 -9.420 -0.016 -8.196 -8.476 -8.871 -6.211 -3.823 -6.630 -0.858 -7.241 -5.235 -2.245 -6.852 -5.172 3.855 -5.432 -1.612 -2.606 -5.392 -4.393 -5.488 ML 153 151 6 156 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 49 64 G C - - MP 158 157 6 162 6 2 2 29 48 -9.480 -9.420 -0.016 -8.196 -8.476 -8.871 -5.661 -3.610 -5.861 -0.449 -6.840 -5.175 -1.853 -6.249 -4.990 3.765 -5.278 -0.310 -2.132 -5.110 -3.947 -4.733 ML 159 157 6 162 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 50 63 U A - - MP 164 163 6 168 6 2 2 27 46 -9.480 -9.420 -0.016 -8.196 -8.476 -8.871 -6.319 -6.169 -5.906 -2.390 -4.504 -6.274 -0.183 -5.311 -5.898 -2.344 -6.176 -4.034 3.830 -6.344 -2.126 -4.341 ML 165 163 6 168 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 51 62 G C - - MP 170 169 6 174 6 2 2 25 44 -9.480 -9.420 -0.016 -8.196 -8.476 -8.871 -6.211 -3.823 -6.630 -0.858 -7.241 -5.235 -2.245 -6.852 -5.172 3.855 -5.432 -1.612 -2.606 -5.392 -4.393 -5.488 ML 171 169 6 174 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 52 61 g c - - MP 176 175 6 180 6 2 2 23 42 -9.480 -9.420 -0.016 -8.196 -8.476 -8.871 -4.178 -2.883 -4.138 2.311 -5.144 -4.946 -0.439 -4.581 -4.219 2.982 -4.620 -0.042 -0.688 -4.200 -2.417 -3.020 ML 177 175 6 180 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 53 60 C G - - MP 182 181 6 186 4 2 2 21 40 -7.774 -7.981 -0.030 -6.395 -4.778 -4.743 -4.496 -0.829 -3.157 -4.940 3.193 -3.951 -4.501 -0.660 -4.817 -2.649 2.132 -4.836 -0.799 -3.308 ML 183 181 6 186 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 185 181 6 186 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 186 186 5 186 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 187 187 6 187 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 54 - U - - - ML 188 187 6 190 3 1 1 18 37 -8.745 -0.012 -7.399 -2.951 -2.712 -3.730 1.865 D 189 187 6 190 3 0 0 18 36 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 55 - U - - - ML 191 190 3 193 3 1 1 17 35 -8.745 -0.012 -7.399 -0.211 -0.761 -1.192 1.076 D 192 190 3 193 3 0 0 17 35 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 56 - U - - - ML 194 193 3 196 3 1 1 16 34 -8.745 -0.012 -7.399 -0.185 -1.015 -1.224 1.136 D 195 193 3 196 3 0 0 16 34 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 57 - U - - - ML 197 196 3 199 3 1 1 14 33 -8.745 -0.482 -1.827 -1.037 -1.785 -2.434 1.603 D 198 196 3 199 3 0 0 14 33 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 58 - U - - - ML 200 199 3 202 3 1 1 13 31 -8.279 -0.017 -6.933 -0.893 -1.350 -1.953 1.491 D 201 199 3 202 3 0 0 12 30 -8.602 -4.115 -0.090 IL 202 202 3 202 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 59 - A - - - ML 203 202 3 205 2 1 1 1 1 * 0.000 1.406 -1.880 -0.524 -1.386 D 204 202 3 205 2 0 0 0 0 * 0.000 IL 205 205 3 205 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 206 205 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME P26 ACC RF00630 DESC Pseudomonas sRNA P26 LENG 66 MAXL 136 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:51:37 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 27 EFFN 7.814575 CKSUM 1017303158 STATS LOCAL MSV -7.6974 0.71920 STATS LOCAL VITERBI -8.8914 0.71920 STATS LOCAL FORWARD -3.7329 0.71920 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.62490 1.35748 1.29804 1.29940 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 0.00000 * 1 1.09396 2.18659 1.26394 1.30832 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 2 0.98507 1.63135 1.67659 1.41095 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 3 1.71751 0.73164 1.96406 1.61404 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 4 2.03028 1.03180 2.48490 0.84629 4 u - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 5 2.29923 2.11783 2.85458 0.32602 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 6 2.15254 2.50962 2.64145 0.31299 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 7 1.40712 1.64896 0.77499 2.28087 7 g - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 8 1.22072 1.19951 1.61949 1.58163 8 c - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 9 2.75659 3.37224 0.32399 1.72080 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 10 1.51874 2.07107 1.77604 0.72226 10 u - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 11 2.20299 1.22156 1.95575 0.79120 11 u - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 12 1.95738 1.48821 2.06965 0.67971 12 U - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 13 1.46873 1.29819 1.11540 1.77800 13 g - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 14 3.38553 0.39859 3.34140 1.34905 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 15 0.41518 3.37999 1.47211 2.57323 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 16 3.05154 2.65505 0.15737 3.57453 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 17 3.81083 0.23263 3.67540 1.83206 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 18 3.95407 0.19603 3.83040 1.98676 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 19 2.28935 1.23617 2.16111 0.70729 19 u - - - 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 20 0.93957 3.51796 0.61858 3.19814 20 G - - - 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 21 0.52031 1.96040 2.16284 1.89802 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.43275 4.76179 1.07083 1.46634 0.26236 1.09861 0.40547 22 2.39938 2.85971 0.29952 2.20032 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.02602 4.35506 4.35506 1.46634 0.26236 2.31654 0.10382 23 1.73529 0.73467 2.22850 1.44267 23 c - - < 1.38629 1.38629 1.38629 1.38629 1.25272 0.59021 1.83219 0.04396 3.14637 1.03750 0.43748 24 1.28917 1.55985 2.11276 0.93285 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02474 4.40487 4.40487 1.46634 0.26236 3.64038 0.02659 25 1.56651 1.38372 2.50526 0.77886 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02474 4.40487 4.40487 1.46634 0.26236 0.60132 0.79426 26 1.07070 1.71992 2.05774 1.04865 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01985 4.62236 4.62236 1.46634 0.26236 1.49394 0.25423 27 0.66472 2.04527 2.18835 1.41003 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.39132 2.86163 1.32177 0.30569 1.33413 2.71671 0.06838 28 1.61471 2.40352 0.66659 1.62356 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.02602 4.35506 4.35506 1.46634 0.26236 3.73965 0.02405 29 2.31811 0.33477 2.69000 2.13576 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.96282 0.79485 1.79254 0.05593 2.91155 0.52869 0.89007 30 0.67236 2.05154 2.16312 1.40245 33 A - - - 1.38629 1.38629 1.38629 1.38629 0.14334 4.49654 2.10050 1.46634 0.26236 3.40946 0.03362 31 0.81058 1.89693 2.34014 1.17423 34 a - - - 1.38629 1.38629 1.38629 1.38629 0.02541 4.37860 4.37860 1.46634 0.26236 0.05099 3.00143 32 0.40657 1.67745 2.63989 2.57898 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 33 2.13371 3.99512 0.17491 3.74357 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 34 2.14899 3.85602 0.17964 3.62396 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 35 3.85738 0.16906 2.60576 2.80387 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.06124 4.76179 2.97891 1.46634 0.26236 1.09861 0.40547 36 2.71399 1.80940 3.24872 0.31313 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.05900 4.71857 3.02896 1.46634 0.26236 2.07279 0.13449 37 1.42361 3.58712 0.36075 3.37186 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.01876 4.67833 4.67833 1.46634 0.26236 0.17645 1.82167 38 0.10563 3.97499 2.81802 3.82861 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 39 2.59167 2.17562 2.18508 0.35796 42 U - - - 1.38629 1.38629 1.38629 1.38629 0.06556 2.90206 4.76179 0.28677 1.38904 1.09861 0.40547 40 3.41474 4.45878 0.05877 4.37274 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 41 3.60991 4.63423 0.04785 4.60948 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 42 4.83306 0.04576 4.78273 3.56158 46 C - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 43 4.05323 2.36416 3.93495 0.14034 47 U - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 44 3.60714 4.62950 0.04805 4.60297 48 G - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 45 3.38203 4.41906 0.06107 4.32635 49 G - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 46 4.93859 3.67010 4.90674 0.04086 50 U - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 47 3.60388 4.62394 0.04828 4.59532 51 G - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 48 1.01647 3.33409 0.58063 3.14798 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 49 3.67889 0.46258 3.49024 1.15646 53 C - - < 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 50 4.07895 3.83862 4.62970 0.04941 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 51 1.57834 2.02346 2.32910 0.57252 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 52 1.55782 2.27582 2.36732 0.52263 56 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 53 2.26387 3.05319 3.56594 0.19775 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.40165 4.76179 1.13248 1.46634 0.26236 1.09861 0.40547 54 2.25204 2.69298 3.17555 0.24161 58 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02523 4.38537 4.38537 1.46634 0.26236 3.68102 0.02552 55 0.32136 3.11838 1.76188 2.83209 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02523 4.38537 4.38537 1.46634 0.26236 0.05171 2.98787 56 1.22449 3.65032 0.43395 3.43682 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 57 3.39013 0.67122 3.13636 0.88729 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 58 4.67494 0.05973 4.50975 3.27937 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 59 0.04740 5.10124 3.48499 4.65157 63 A - - > 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 60 4.45667 0.11123 4.28084 2.52777 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 61 4.68964 0.05938 4.51800 3.28201 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 62 1.08931 4.08431 0.47064 3.81146 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 63 3.83331 4.94167 0.03891 4.66943 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 64 4.72028 0.05868 4.53502 3.28743 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 65 4.53620 0.10091 4.34486 2.62695 69 C - - > 1.38629 1.38629 1.38629 1.38629 0.01725 4.76179 4.76179 1.46634 0.26236 1.09861 0.40547 66 4.07895 3.83862 4.62970 0.04941 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.00866 4.75320 * 1.46634 0.26236 0.00000 * //