INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD110 ACC RF00610 DESC Small nucleolar RNA SNORD110 STATES 217 NODES 69 CLEN 71 W 90 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 22:23:28 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00610/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 16 EFFN 2.191406 CKSUM 2371490111 NULL 0.000 0.000 0.000 0.000 GA 64.00 TC 64.70 NC 60.60 EFP7GF -8.7121 0.71875 ECMLC 0.69110 -5.34317 3.05219 1600000 397168 0.003021 ECMGC 0.36952 -18.77176 -4.02605 1600000 92993 0.004301 ECMLI 0.63672 -3.75371 4.89005 1600000 294707 0.004072 ECMGI 0.41728 -12.24681 0.05095 1600000 67715 0.005907 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 90 113 -9.148 -9.087 -0.041 -7.864 -5.827 -8.538 IL 1 1 2 1 6 1 26 92 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 26 91 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 81 U A - - MP 3 2 3 7 6 2 28 90 113 -9.127 -9.067 -0.021 -7.843 -8.123 -8.518 -4.306 -4.134 -4.131 -0.420 -3.049 -4.685 1.282 -3.752 -4.135 -0.183 -4.502 -2.029 3.380 -4.453 -0.722 -2.947 ML 4 2 3 7 6 1 23 89 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 23 88 111 -7.211 -5.940 -1.849 -5.918 -0.676 -4.132 0.778 -0.670 -0.389 -0.163 D 6 2 3 7 6 0 18 86 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 25 90 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 25 89 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 80 U A - - MP 9 8 6 13 6 2 27 88 111 -9.127 -9.067 -0.021 -7.843 -8.123 -8.518 -4.306 -4.134 -4.131 -0.420 -3.049 -4.685 1.282 -3.752 -4.135 -0.183 -4.502 -2.029 3.380 -4.453 -0.722 -2.947 ML 10 8 6 13 6 1 23 87 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 21 86 109 -7.211 -5.940 -1.849 -5.918 -0.676 -4.132 0.778 -0.670 -0.389 -0.163 D 12 8 6 13 6 0 18 84 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 24 88 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 24 87 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 79 G C - - MP 15 14 6 19 6 2 25 86 109 -9.127 -9.067 -0.021 -7.843 -8.123 -8.518 -4.840 -3.141 -4.949 0.135 -5.371 -4.732 -0.711 -5.198 -4.391 3.661 -4.721 -0.844 -1.093 -4.532 -2.753 -3.824 ML 16 14 6 19 6 1 22 85 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 20 85 108 -7.211 -5.940 -1.849 -5.918 -0.676 -4.132 0.092 0.220 -0.592 0.146 D 18 14 6 19 6 0 18 83 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 23 86 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 23 85 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 78 C G - - MP 21 20 6 25 4 2 23 84 107 -7.000 -7.207 -0.051 -5.621 -4.658 -4.574 -4.330 -0.796 -3.024 -4.727 3.583 -3.845 -4.383 -0.571 -4.632 -2.522 0.479 -4.720 -0.733 -3.219 ML 22 20 6 25 4 1 21 84 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 18 83 106 -5.064 -4.093 -1.960 -0.612 0.200 -0.675 0.416 -0.167 D 24 20 6 25 4 0 17 82 105 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 22 85 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 22 84 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 27 26 6 29 3 1 22 82 105 -8.012 -0.020 -6.666 1.534 -1.885 -1.131 -1.406 D 28 26 6 29 3 0 17 80 103 -6.581 -2.094 -0.405 IL 29 29 3 29 3 1 21 83 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - g - - - ML 30 29 3 32 3 1 21 81 104 -8.012 -0.020 -6.666 0.606 -1.463 0.650 -0.873 D 31 29 3 32 3 0 16 79 102 -6.581 -2.094 -0.405 IL 32 32 3 32 3 1 20 82 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 33 32 3 35 3 1 20 80 103 -8.012 -0.020 -6.666 -1.575 -1.556 -2.313 1.643 D 34 32 3 35 3 0 16 78 101 -6.581 -2.094 -0.405 IL 35 35 3 35 3 1 20 81 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 36 35 3 38 3 1 19 79 102 -8.012 -0.020 -6.666 -1.683 -2.919 1.746 -2.306 D 37 35 3 38 3 0 15 77 100 -6.581 -2.094 -0.405 IL 38 38 3 38 3 1 19 80 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 39 38 3 41 3 1 18 78 101 -8.012 -0.020 -6.666 1.739 -2.469 -2.091 -2.021 D 40 38 3 41 3 0 15 76 99 -6.581 -1.059 -0.973 IL 41 41 3 41 3 1 18 79 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 42 41 3 44 3 1 17 77 100 -4.738 -0.069 -6.715 -1.666 -1.631 -2.408 1.666 D 43 41 3 44 3 0 13 75 98 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 17 78 101 -1.369 -0.825 -4.365 0.000 0.000 0.000 0.000 [ MATL 11 ] 13 - G - - - ML 45 44 3 47 3 1 16 76 99 -8.061 -0.019 -6.715 -1.786 -3.037 1.766 -2.424 D 46 44 3 47 3 0 13 74 97 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 16 77 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 14 - A - - - ML 48 47 3 50 3 1 15 74 98 -8.061 -0.019 -6.715 1.758 -2.567 -2.179 -2.129 D 49 47 3 50 3 0 12 73 96 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 15 76 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 15 - C - - - ML 51 50 3 53 3 1 14 73 97 -8.061 -0.019 -6.715 -1.978 1.682 -2.807 -1.343 D 52 50 3 53 3 0 12 72 95 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 15 75 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 16 - U - - - ML 54 53 3 56 3 1 13 72 96 -8.061 -0.019 -6.715 -1.666 -1.631 -2.408 1.666 D 55 53 3 56 3 0 11 71 94 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 14 74 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 17 - U - - - ML 57 56 3 59 3 1 12 71 95 -8.061 -0.337 -2.291 -0.706 -0.520 -1.204 1.173 D 58 56 3 59 3 0 11 70 93 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 13 73 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 18 - G - - - ML 60 59 3 62 3 1 12 71 94 -2.959 -0.557 -2.382 0.009 -1.482 1.064 -0.877 D 61 59 3 62 3 0 10 69 92 -7.723 -0.605 -1.566 IL 62 62 3 62 3 1 14 71 95 -1.455 -0.751 -4.611 0.000 0.000 0.000 0.000 [ MATL 17 ] 22 - a - - - ML 63 62 3 65 3 1 14 69 92 -7.780 -0.023 -6.434 0.782 -0.885 -0.374 -0.047 D 64 62 3 65 3 0 8 66 90 -7.631 -3.144 -0.181 IL 65 65 3 65 3 1 13 70 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 23 - u - - - ML 66 65 3 68 3 1 13 68 91 -3.712 -0.133 -6.434 0.232 -0.485 -0.434 0.455 D 67 65 3 68 3 0 8 66 89 -7.631 -3.144 -0.181 IL 68 68 3 68 3 1 12 69 92 -1.639 -0.668 -4.339 0.000 0.000 0.000 0.000 [ MATL 19 ] 25 - a - - - ML 69 68 3 71 3 1 12 67 90 -7.780 -0.023 -6.434 0.762 -0.831 -0.587 0.106 D 70 68 3 71 3 0 8 65 89 -7.631 -0.417 -2.023 IL 71 71 3 71 3 1 11 68 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 26 - a - - - ML 72 71 3 74 3 1 11 66 89 -8.061 -0.019 -6.715 0.889 -0.978 -0.688 0.028 D 73 71 3 74 3 0 5 64 87 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 10 67 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 27 - A - - - ML 75 74 3 77 3 1 11 65 88 -8.061 -0.019 -6.715 1.235 -1.329 -0.736 -0.627 D 76 74 3 77 3 0 5 63 86 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 9 66 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 28 - U - - - ML 78 77 3 80 3 1 10 64 87 -8.061 -0.019 -6.715 -1.666 -1.631 -2.408 1.666 D 79 77 3 80 3 0 4 62 85 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 9 65 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 29 - C - - - ML 81 80 3 83 3 1 9 63 86 -8.061 -0.019 -6.715 -1.978 1.682 -2.807 -1.343 D 82 80 3 83 3 0 3 61 84 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 8 64 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 30 - U - - - ML 84 83 3 86 3 1 9 62 85 -8.061 -0.019 -6.715 -1.666 -1.631 -2.408 1.666 D 85 83 3 86 3 0 3 60 83 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 7 63 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 31 - G - - - ML 87 86 3 89 3 1 8 60 84 -8.061 -0.019 -6.715 -1.786 -3.037 1.766 -2.424 D 88 86 3 89 3 0 2 59 82 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 6 62 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 32 - U - - - ML 90 89 3 92 3 1 7 59 83 -8.061 -0.019 -6.715 -1.666 -1.631 -2.408 1.666 D 91 89 3 92 3 0 1 58 81 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 6 61 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 33 - C - - - ML 93 92 3 95 3 1 7 58 82 -8.061 -0.019 -6.715 -1.978 1.682 -2.807 -1.343 D 94 92 3 95 3 0 1 57 80 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 5 60 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 34 - A - - - ML 96 95 3 98 3 1 6 57 81 -8.061 -0.019 -6.715 1.758 -2.567 -2.179 -2.129 D 97 95 3 98 3 0 0 56 79 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 4 59 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 35 - A - - - ML 99 98 3 101 3 1 5 56 80 -8.061 -0.019 -6.715 1.758 -2.567 -2.179 -2.129 D 100 98 3 101 3 0 0 55 78 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 4 58 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 36 - U - - - ML 102 101 3 104 3 1 5 55 79 -8.061 -0.019 -6.715 -1.666 -1.631 -2.408 1.666 D 103 101 3 104 3 0 0 54 77 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 3 57 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 37 - C - - - ML 105 104 3 107 3 1 4 54 78 -8.061 -0.019 -6.715 -1.978 1.682 -2.807 -1.343 D 106 104 3 107 3 0 0 53 76 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 3 56 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 38 - C - - - ML 108 107 3 110 3 1 4 53 77 -8.061 -0.019 -6.715 -1.978 1.682 -2.807 -1.343 D 109 107 3 110 3 0 0 52 75 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 2 55 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 39 - C - - - ML 111 110 3 113 3 1 3 52 76 -8.061 -0.019 -6.715 -1.978 1.682 -2.807 -1.343 D 112 110 3 113 3 0 0 51 74 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 2 54 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 40 - C - - - ML 114 113 3 116 3 1 3 51 75 -8.061 -0.019 -6.715 -1.054 1.328 -1.384 -0.678 D 115 113 3 116 3 0 0 50 73 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 53 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 41 - U - - - ML 117 116 3 119 3 1 2 50 74 -8.061 -0.019 -6.715 -1.666 -1.631 -2.408 1.666 D 118 116 3 119 3 0 0 49 72 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 52 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 42 - G - - - ML 120 119 3 122 3 1 2 49 73 -8.061 -0.019 -6.715 -1.786 -3.037 1.766 -2.424 D 121 119 3 122 3 0 0 48 71 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 51 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 43 - A - - - ML 123 122 3 125 3 1 2 48 72 -8.061 -0.019 -6.715 1.758 -2.567 -2.179 -2.129 D 124 122 3 125 3 0 0 47 70 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 50 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 44 - G - - - ML 126 125 3 128 3 1 1 47 70 -8.061 -0.019 -6.715 -1.017 -2.476 1.611 -1.886 D 127 125 3 128 3 0 0 46 69 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 49 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 45 - U - - - ML 129 128 3 131 3 1 1 46 69 -8.061 -0.019 -6.715 -0.499 -1.058 -1.560 1.306 D 130 128 3 131 3 0 0 44 68 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 48 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - G - - - ML 132 131 3 134 3 1 1 45 68 -4.904 -0.224 -3.180 -0.463 -1.388 1.270 -1.056 D 133 131 3 134 3 0 0 43 66 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 48 72 -1.136 -0.996 -4.514 0.000 0.000 0.000 0.000 [ MATL 41 ] 51 - C - - - ML 135 134 3 137 3 1 1 42 61 -7.907 -0.021 -6.561 -0.849 1.029 -1.654 0.119 D 136 134 3 137 3 0 0 40 60 -7.172 -2.685 -0.256 IL 137 137 3 137 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 52 - A - - - ML 138 137 3 140 3 1 1 41 60 -7.907 -0.021 -6.561 1.024 -1.029 -0.741 -0.187 D 139 137 3 140 3 0 0 40 59 -7.172 -0.611 -1.564 IL 140 140 3 140 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 53 - a - - - ML 141 140 3 143 3 1 1 40 59 -8.061 -0.019 -6.715 0.733 -0.865 0.130 -0.525 D 142 140 3 143 3 0 0 38 58 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 54 - U - - - ML 144 143 3 146 3 1 1 39 58 -8.061 -0.019 -6.715 -1.203 -0.906 -1.940 1.471 D 145 143 3 146 3 0 0 37 57 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 55 - C - - - ML 147 146 3 149 3 1 1 38 57 -8.061 -0.019 -6.715 -1.978 1.682 -2.807 -1.343 D 148 146 3 149 3 0 0 36 56 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 56 - A - - - ML 150 149 3 152 3 1 1 37 56 -8.061 -0.019 -6.715 1.283 -1.603 -0.391 -1.074 D 151 149 3 152 3 0 0 35 55 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 57 - c - - - ML 153 152 3 155 3 1 1 36 55 -8.061 -0.019 -6.715 -0.510 0.853 -1.476 0.179 D 154 152 3 155 3 0 0 34 54 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 58 - U - - - ML 156 155 3 158 3 1 1 34 54 -8.061 -0.019 -6.715 -1.666 -1.631 -2.408 1.666 D 157 155 3 158 3 0 0 33 53 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 59 - G - - - ML 159 158 3 161 3 1 1 33 52 -8.061 -0.019 -6.715 -1.786 -3.037 1.766 -2.424 D 160 158 3 161 3 0 0 32 51 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 60 - A - - - ML 162 161 3 164 3 1 1 32 51 -8.061 -0.019 -6.715 1.758 -2.567 -2.179 -2.129 D 163 161 3 164 3 0 0 31 50 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 61 - U - - - ML 165 164 3 167 3 1 1 31 50 -8.061 -0.019 -6.715 -0.473 -0.528 -1.417 1.145 D 166 164 3 167 3 0 0 30 49 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 62 - G - - - ML 168 167 3 170 3 1 1 30 49 -8.061 -0.019 -6.715 -1.786 -3.037 1.766 -2.424 D 169 167 3 170 3 0 0 29 48 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 63 - U - - - ML 171 170 3 173 3 1 1 29 48 -8.061 -0.019 -6.715 -0.246 -0.983 -1.418 1.187 D 172 170 3 173 3 0 0 28 47 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 64 - C - - - ML 174 173 3 176 3 1 1 28 47 -8.061 -0.019 -6.715 -1.978 1.682 -2.807 -1.343 D 175 173 3 176 3 0 0 27 46 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 65 - U - - - ML 177 176 3 179 3 1 1 27 46 -8.061 -0.019 -6.715 -0.344 -1.010 -1.472 1.236 D 178 176 3 179 3 0 0 26 45 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 66 - C - - - ML 180 179 3 182 3 1 1 26 45 -8.061 -0.019 -6.715 -0.482 1.075 -1.215 -0.422 D 181 179 3 182 3 0 0 25 44 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 67 - c - - - ML 183 182 3 185 3 1 1 25 43 -8.061 -0.019 -6.715 -0.326 0.905 -1.450 -0.053 D 184 182 3 185 3 0 0 24 43 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 68 - A - - - ML 186 185 3 188 3 1 1 23 42 -8.061 -0.019 -6.715 1.144 -0.944 -0.623 -0.688 D 187 185 3 188 3 0 0 22 41 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 69 - U - - - ML 189 188 3 191 3 1 1 22 41 -8.061 -0.019 -6.715 -1.666 -1.631 -2.408 1.666 D 190 188 3 191 3 0 0 21 40 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 70 - G - - - ML 192 191 3 194 3 1 1 21 40 -8.061 -0.019 -6.715 -1.786 -3.037 1.766 -2.424 D 193 191 3 194 3 0 0 20 39 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 71 - U - - - ML 195 194 3 197 3 1 1 20 39 -8.061 -0.019 -6.715 -1.666 -1.631 -2.408 1.666 D 196 194 3 197 3 0 0 19 38 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 72 - C - - - ML 198 197 3 200 3 1 1 19 37 -8.061 -0.019 -6.715 -0.732 1.048 -1.028 -0.252 D 199 197 3 200 3 0 0 18 37 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 73 - U - - - ML 201 200 3 203 3 1 1 17 36 -8.061 -0.019 -6.715 -1.143 -0.788 -1.882 1.431 D 202 200 3 203 3 0 0 17 36 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 74 - C - - - ML 204 203 3 206 3 1 1 16 35 -8.061 -0.019 -6.715 -1.978 1.682 -2.807 -1.343 D 205 203 3 206 3 0 0 16 34 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 75 - U - - - ML 207 206 3 209 3 1 1 15 33 -8.061 -0.019 -6.715 -1.666 -1.631 -2.408 1.666 D 208 206 3 209 3 0 0 15 33 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 76 - G - - - ML 210 209 3 212 3 1 1 13 31 -8.061 -0.019 -6.715 -1.786 -3.037 1.766 -2.424 D 211 209 3 212 3 0 0 13 32 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 77 - A - - - ML 213 212 3 215 2 1 1 1 1 * 0.000 1.758 -2.567 -2.179 -2.129 D 214 212 3 215 2 0 0 0 0 * 0.000 IL 215 215 3 215 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 68 ] - - - - - - E 216 215 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD110 ACC RF00610 DESC Small nucleolar RNA SNORD110 LENG 71 MAXL 156 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 22:23:28 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00610/CM NSEQ 16 EFFN 2.363281 CKSUM 2371490111 STATS LOCAL MSV -8.7401 0.71875 STATS LOCAL VITERBI -9.2262 0.71875 STATS LOCAL FORWARD -3.6229 0.71875 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39515 1.44625 1.51039 1.21764 1.38629 1.38629 1.38629 1.38629 0.07618 3.97426 2.90853 1.46634 0.26236 0.00000 * 1 2.93368 1.85538 2.65894 0.32797 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.03976 3.93785 3.93785 1.46634 0.26236 1.58984 0.22810 2 2.92028 1.85478 2.65329 0.32965 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03976 3.93785 3.93785 1.46634 0.26236 1.58984 0.22810 3 2.55310 3.18572 0.17787 3.12895 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03976 3.93785 3.93785 1.46634 0.26236 1.58984 0.22810 4 3.14245 0.25476 2.90590 2.06338 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03976 3.93785 3.93785 1.46634 0.26236 1.58984 0.22810 5 0.30707 2.74478 2.19648 2.41974 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03976 3.93785 3.93785 1.46634 0.26236 1.58984 0.22810 6 0.96006 2.43758 0.92005 2.03059 6 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03976 3.93785 3.93785 1.46634 0.26236 1.58984 0.22810 7 2.55410 2.52762 3.06916 0.22825 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03976 3.93785 3.93785 1.46634 0.26236 1.58984 0.22810 8 2.63854 3.50775 0.15928 3.08326 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03976 3.93785 3.93785 1.46634 0.26236 1.58984 0.22810 9 0.16534 3.17952 2.90949 2.87726 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03976 3.93785 3.93785 1.46634 0.26236 0.52411 0.89669 10 2.62000 2.58226 3.13782 0.21293 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.07707 2.89348 3.97426 0.93596 0.49792 1.09861 0.40547 11 2.71136 3.59075 0.14640 3.16623 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 12 0.15315 3.25002 2.97304 2.95498 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 13 2.85935 0.19878 3.43547 2.39958 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 14 2.62000 2.58226 3.13782 0.21293 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 15 1.90936 1.75901 2.24533 0.55562 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.28633 3.97426 1.46884 1.46634 0.26236 1.09861 0.40547 16 1.39210 2.45090 0.62687 2.03280 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.48525 1.82531 1.49927 0.59602 0.80074 0.31283 1.31445 17 0.83622 2.01398 1.64778 1.42412 22 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04761 3.76152 3.76152 1.46634 0.26236 2.58002 0.07880 18 1.22513 1.72753 1.68733 1.06843 23 u - - _ 1.38629 1.38629 1.38629 1.38629 0.13445 2.27735 3.76152 0.40453 1.10049 2.58002 0.07880 19 0.84951 1.97613 1.80043 1.31475 25 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04761 3.76152 3.76152 1.46634 0.26236 0.16434 1.88687 20 0.75930 2.08335 1.87351 1.37078 26 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 21 0.51636 2.33572 1.90869 1.84329 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 22 2.62000 2.58226 3.13782 0.21293 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 23 2.85935 0.19878 3.43547 2.39958 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 24 2.62000 2.58226 3.13782 0.21293 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 25 2.71136 3.59075 0.14640 3.16623 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 26 2.62000 2.58226 3.13782 0.21293 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 27 2.85935 0.19878 3.43547 2.39958 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 28 0.15315 3.25002 2.97304 2.95498 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 29 0.15315 3.25002 2.97304 2.95498 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 30 2.62000 2.58226 3.13782 0.21293 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 31 2.85935 0.19878 3.43547 2.39958 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 32 2.85935 0.19878 3.43547 2.39958 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 33 2.85935 0.19878 3.43547 2.39958 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 34 2.17946 0.43678 2.38404 1.90647 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 35 2.62000 2.58226 3.13782 0.21293 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 36 2.71136 3.59075 0.14640 3.16623 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 37 0.15315 3.25002 2.97304 2.95498 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 38 2.13868 3.17545 0.25139 2.76952 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 39 1.75683 2.15558 2.51107 0.46141 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 40 1.73593 2.37497 0.48484 2.16326 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.19751 2.97631 2.05380 1.40768 0.28065 1.09861 0.40547 41 2.01575 0.64945 2.57852 1.31468 51 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04312 3.85834 3.85834 1.46634 0.26236 2.17749 0.12028 42 0.66462 2.11899 1.91220 1.52499 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04312 3.85834 3.85834 1.46634 0.26236 0.25703 1.48434 43 0.87107 1.99755 1.28695 1.77362 53 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 44 2.27395 2.04198 2.78666 0.34857 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 45 2.85935 0.19878 3.43547 2.39958 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 46 0.48196 2.53982 1.65947 2.17765 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 47 1.76359 0.77458 2.44588 1.26931 57 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 48 2.62000 2.58226 3.13782 0.21293 58 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 49 2.71136 3.59075 0.14640 3.16623 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 50 0.15315 3.25002 2.97304 2.95498 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 51 1.73614 1.76397 2.40152 0.57651 61 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 52 2.71136 3.59075 0.14640 3.16623 62 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 53 1.57194 2.09903 2.40532 0.54551 63 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 54 2.85935 0.19878 3.43547 2.39958 64 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 55 1.64314 2.11980 2.44538 0.51103 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 56 1.74902 0.61554 2.25766 1.70865 66 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 57 1.63079 0.73753 2.42828 1.43656 67 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 58 0.57894 2.05431 1.82838 1.89277 68 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 59 2.62000 2.58226 3.13782 0.21293 69 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 60 2.71136 3.59075 0.14640 3.16623 70 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 61 2.62000 2.58226 3.13782 0.21293 71 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 62 1.93377 0.63451 2.11896 1.58453 72 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 63 2.23015 1.95539 2.74376 0.37593 73 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 64 2.85935 0.19878 3.43547 2.39958 74 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 65 2.62000 2.58226 3.13782 0.21293 75 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 66 2.71136 3.59075 0.14640 3.16623 76 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 67 0.15315 3.25002 2.97304 2.95498 77 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 68 2.33729 3.07105 0.22111 2.89307 78 G - - > 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 69 3.31698 0.21294 3.01480 2.23980 79 C - - > 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 70 0.37705 2.82618 1.69247 2.64769 80 A - - > 1.38629 1.38629 1.38629 1.38629 0.03831 3.97426 3.97426 1.46634 0.26236 1.09861 0.40547 71 0.37814 2.82134 1.69240 2.64136 81 A - - > 1.38629 1.38629 1.38629 1.38629 0.01934 3.95529 * 1.46634 0.26236 0.00000 * //