INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD93 ACC RF00606 DESC Small nucleolar RNA SNORD93 STATES 226 NODES 72 CLEN 74 W 113 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 08:12:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00606/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 17 EFFN 1.979736 CKSUM 2944947757 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 60.00 NC 59.90 EFP7GF -8.9994 0.71872 ECMLC 0.64681 -6.42555 2.77362 1600000 460542 0.002606 ECMGC 0.38699 -17.40909 -3.08081 1600000 102376 0.003907 ECMLI 0.56730 -5.22805 4.44575 1600000 290101 0.004136 ECMGI 0.44071 -10.77877 0.99821 1600000 71801 0.005571 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 113 165 -6.968 -7.175 -0.052 -5.590 IL 1 1 2 1 4 1 30 115 167 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 30 114 167 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 30 113 165 -8.373 -0.018 -6.690 -1.521 -1.511 -2.257 1.628 D 4 2 3 5 3 0 24 111 163 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 28 113 165 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 91 - A - - MR 6 5 3 8 5 1 29 112 164 -7.110 -0.039 -6.925 -7.138 -8.029 1.727 -2.410 -2.038 -1.956 D 7 5 3 8 5 0 22 110 162 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 26 112 164 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 90 G C - - MP 9 8 3 13 6 2 29 111 163 -9.115 -9.055 -0.021 -7.831 -8.111 -8.506 -4.783 -3.114 -4.886 0.173 -5.291 -4.710 -0.645 -5.132 -4.355 3.648 -4.689 -0.814 -1.029 -4.495 -2.684 -3.762 ML 10 8 3 13 6 1 24 109 161 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 23 109 161 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 19 105 157 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 25 110 162 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 26 110 162 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 89 G C - - MP 15 14 6 19 6 2 27 109 161 -9.115 -9.055 -0.021 -7.831 -8.111 -8.506 -4.783 -3.114 -4.886 0.173 -5.291 -4.710 -0.645 -5.132 -4.355 3.648 -4.689 -0.814 -1.029 -4.495 -2.684 -3.762 ML 16 14 6 19 6 1 23 107 159 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 22 107 159 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 18 104 156 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 25 108 160 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 25 108 160 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 88 C G - - MP 21 20 6 25 6 2 26 107 159 -9.115 -9.055 -0.021 -7.831 -8.111 -8.506 -4.596 -4.506 -4.278 -0.734 -2.986 -4.684 3.565 -3.801 -4.329 -0.501 -4.585 -2.454 0.524 -4.662 -0.693 -3.167 ML 22 20 6 25 6 1 22 105 157 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 21 105 157 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 18 102 155 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 23 106 158 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 23 106 158 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 87 C G - - MP 27 26 6 31 4 2 24 105 157 -6.968 -7.175 -0.052 -5.590 -4.596 -4.506 -4.278 -0.734 -2.986 -4.684 3.565 -3.801 -4.329 -0.501 -4.585 -2.454 0.524 -4.662 -0.693 -3.167 ML 28 26 6 31 4 1 21 104 156 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 19 103 155 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 18 102 154 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 23 105 157 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 22 104 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - A - - - ML 33 32 6 35 3 1 22 103 155 -7.983 -0.020 -6.637 1.536 -1.875 -1.163 -1.395 D 34 32 6 35 3 0 17 101 153 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 21 103 156 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - A - - - ML 36 35 3 38 3 1 22 102 154 -7.983 -0.020 -6.637 1.461 -1.748 -0.919 -1.252 D 37 35 3 38 3 0 16 100 152 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 21 102 155 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - G - - - ML 39 38 3 41 3 1 21 101 153 -7.983 -0.020 -6.637 -0.511 -2.039 1.427 -1.447 D 40 38 3 41 3 0 15 99 151 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 20 101 154 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 42 41 3 44 3 1 20 100 152 -7.983 -0.020 -6.637 -1.621 -2.848 1.733 -2.235 D 43 41 3 44 3 0 15 98 150 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 19 100 153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - A - - - ML 45 44 3 47 3 1 19 99 151 -7.983 -0.020 -6.637 1.727 -2.410 -2.038 -1.956 D 46 44 3 47 3 0 14 97 149 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 18 99 152 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - U - - - ML 48 47 3 50 3 1 18 98 150 -7.983 -0.020 -6.637 -1.521 -1.511 -2.257 1.628 D 49 47 3 50 3 0 13 96 148 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 18 98 151 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - G - - - ML 51 50 3 53 3 1 18 97 149 -7.983 -0.020 -6.637 -1.621 -2.848 1.733 -2.235 D 52 50 3 53 3 0 12 95 147 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 17 97 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 54 53 3 56 3 1 17 96 148 -7.983 -0.020 -6.637 1.727 -2.410 -2.038 -1.956 D 55 53 3 56 3 0 12 94 146 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 16 97 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - G - - - ML 57 56 3 59 3 1 16 95 147 -7.983 -0.020 -6.637 -0.032 -1.726 1.179 -1.134 D 58 56 3 59 3 0 11 93 145 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 15 96 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 60 59 3 62 3 1 15 94 146 -7.983 -0.020 -6.637 1.727 -2.410 -2.038 -1.956 D 61 59 3 62 3 0 10 92 144 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 15 95 147 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - A - - - ML 63 62 3 65 3 1 15 93 145 -7.983 -0.020 -6.637 1.727 -2.410 -2.038 -1.956 D 64 62 3 65 3 0 10 91 143 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 14 94 146 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - C - - - ML 66 65 3 68 3 1 14 92 144 -7.983 -0.020 -6.637 -0.698 1.198 -1.706 -0.355 D 67 65 3 68 3 0 9 90 142 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 93 145 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - u - - - ML 69 68 3 71 3 1 13 91 143 -7.983 -0.020 -6.637 -0.350 -0.273 -1.282 0.983 D 70 68 3 71 3 0 8 89 141 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 12 92 144 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - C - - - ML 72 71 3 74 3 1 12 90 142 -4.150 -0.143 -4.709 -0.309 1.082 -1.552 -0.446 D 73 71 3 74 3 0 7 88 140 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 12 90 142 -1.609 -0.685 -4.310 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 75 74 3 77 3 1 12 89 141 -7.942 -0.021 -6.596 -0.679 -0.691 -1.176 1.210 D 76 74 3 77 3 0 7 87 139 -6.512 -1.137 -0.904 IL 77 77 3 77 3 1 11 89 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 78 77 3 80 3 1 11 88 140 -7.983 -0.020 -6.637 1.158 -0.816 -1.163 -0.409 D 79 77 3 80 3 0 6 86 138 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 10 88 141 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - A - - - ML 81 80 3 83 3 1 10 87 139 -7.983 -0.020 -6.637 1.269 -1.313 -0.912 -0.607 D 82 80 3 83 3 0 5 85 137 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 9 87 140 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 84 83 3 86 3 1 10 86 138 -7.983 -0.020 -6.637 -0.612 -0.533 -1.055 1.120 D 85 83 3 86 3 0 4 84 136 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 9 86 139 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - C - - - ML 87 86 3 89 3 1 9 85 137 -7.983 -0.020 -6.637 -1.788 1.637 -2.613 -1.192 D 88 86 3 89 3 0 4 83 135 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 8 86 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - U - - - ML 90 89 3 92 3 1 8 84 136 -7.983 -0.020 -6.637 -1.521 -1.511 -2.257 1.628 D 91 89 3 92 3 0 3 82 134 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 7 85 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 93 92 3 95 3 1 8 83 135 -7.983 -0.020 -6.637 -1.621 -2.848 1.733 -2.235 D 94 92 3 95 3 0 3 81 133 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 7 84 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 96 95 3 98 3 1 7 82 134 -7.983 -0.062 -4.709 1.727 -2.410 -2.038 -1.956 D 97 95 3 98 3 0 2 80 132 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 6 83 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - U - - - ML 99 98 3 101 3 1 7 81 133 -7.942 -0.021 -6.596 -0.346 -0.677 -1.324 1.130 D 100 98 3 101 3 0 2 79 131 -6.512 -1.137 -0.904 IL 101 101 3 101 3 1 5 82 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 102 101 3 104 3 1 6 80 132 -7.983 -0.020 -6.637 -1.521 -1.511 -2.257 1.628 D 103 101 3 104 3 0 1 78 130 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 5 81 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - g - - - ML 105 104 3 107 3 1 5 79 131 -7.983 -0.020 -6.637 -0.109 -0.797 0.649 -0.105 D 106 104 3 107 3 0 0 77 129 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 4 80 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - g - - - ML 108 107 3 110 3 1 5 78 130 -7.983 -0.020 -6.637 -0.171 -0.816 0.774 -0.262 D 109 107 3 110 3 0 0 76 128 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 4 79 131 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - a - - - ML 111 110 3 113 3 1 4 77 129 -7.983 -0.020 -6.637 0.718 -0.620 -0.344 -0.126 D 112 110 3 113 3 0 0 75 127 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 3 78 130 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 114 113 3 116 3 1 3 76 128 -4.194 -0.135 -4.844 -0.987 -0.611 -1.725 1.344 D 115 113 3 116 3 0 0 73 126 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 3 77 129 -1.345 -0.835 -4.451 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - a - - - ML 117 116 3 119 3 1 4 75 127 -7.947 -0.021 -6.601 0.820 -0.997 -0.243 -0.171 D 118 116 3 119 3 0 0 72 124 -6.475 -1.988 -0.441 IL 119 119 3 119 3 1 2 76 128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - U - - - ML 120 119 3 122 3 1 4 74 126 -7.947 -0.021 -6.601 -0.955 -0.614 -1.690 1.334 D 121 119 3 122 3 0 0 71 123 -6.475 -1.988 -0.441 IL 122 122 3 122 3 1 2 75 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - g - - - ML 123 122 3 125 3 1 3 73 125 -7.947 -0.021 -6.601 0.127 -0.847 0.732 -0.533 D 124 122 3 125 3 0 0 70 123 -6.475 -1.988 -0.441 IL 125 125 3 125 3 1 2 74 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - C - - - ML 126 125 3 128 3 1 2 72 124 -7.947 -0.021 -6.601 -1.303 1.424 -2.124 -0.552 D 127 125 3 128 3 0 0 70 122 -6.475 -1.988 -0.441 IL 128 128 3 128 3 1 1 73 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - U - - - ML 129 128 3 131 3 1 1 71 123 -7.947 -0.308 -2.411 -1.454 -1.456 -2.186 1.609 D 130 128 3 131 3 0 0 69 121 -6.475 -1.183 -0.867 IL 131 131 3 131 3 1 1 72 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - U - - - ML 132 131 3 134 3 1 2 70 122 -7.709 -0.025 -6.363 -0.689 -0.490 -1.409 1.196 D 133 131 3 134 3 0 0 66 119 -7.566 -1.613 -0.583 IL 134 134 3 134 3 1 1 71 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - c - - - ML 135 134 3 137 3 1 2 69 121 -3.312 -0.171 -6.461 -0.133 0.628 -0.911 0.015 D 136 134 3 137 3 0 0 61 113 -7.228 -2.741 -0.245 IL 137 137 3 137 3 1 1 75 127 -0.510 -1.849 -5.624 0.000 0.000 0.000 0.000 [ MATL 42 ] 57 - U - - - ML 138 137 3 140 3 1 1 44 64 -7.807 -0.023 -6.461 -0.270 -0.587 -1.206 1.051 D 139 137 3 140 3 0 0 43 63 -7.228 -0.861 -1.175 IL 140 140 3 140 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 58 - g - - - ML 141 140 3 143 3 1 1 43 63 -7.945 -0.021 -6.599 -0.053 -1.220 0.876 -0.373 D 142 140 3 143 3 0 0 42 61 -6.489 -2.002 -0.436 IL 143 143 3 143 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 59 - C - - - ML 144 143 3 146 3 1 1 42 62 -7.945 -0.021 -6.599 -0.843 1.205 -1.189 -0.517 D 145 143 3 146 3 0 0 41 60 -6.489 -2.002 -0.436 IL 146 146 3 146 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 60 - U - - - ML 147 146 3 149 3 1 1 41 61 -7.945 -0.021 -6.599 -0.743 -0.972 -1.105 1.279 D 148 146 3 149 3 0 0 40 59 -6.489 -1.165 -0.881 IL 149 149 3 149 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 61 - C - - - ML 150 149 3 152 3 1 1 40 60 -7.983 -0.020 -6.637 -0.723 1.081 -0.875 -0.448 D 151 149 3 152 3 0 0 39 58 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 62 - U - - - ML 153 152 3 155 3 1 1 39 58 -7.983 -0.020 -6.637 -1.521 -1.511 -2.257 1.628 D 154 152 3 155 3 0 0 38 57 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 63 - G - - - ML 156 155 3 158 3 1 1 38 57 -7.983 -0.020 -6.637 -1.621 -2.848 1.733 -2.235 D 157 155 3 158 3 0 0 37 56 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 64 - A - - - ML 159 158 3 161 3 1 1 37 56 -7.983 -0.020 -6.637 1.727 -2.410 -2.038 -1.956 D 160 158 3 161 3 0 0 36 55 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 65 - U - - - ML 162 161 3 164 3 1 1 36 55 -7.983 -0.020 -6.637 -1.521 -1.511 -2.257 1.628 D 163 161 3 164 3 0 0 35 54 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 66 - G - - - ML 165 164 3 167 3 1 1 35 54 -7.983 -0.020 -6.637 -1.621 -2.848 1.733 -2.235 D 166 164 3 167 3 0 0 33 53 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 67 - G - - - ML 168 167 3 170 3 1 1 34 53 -4.720 -0.071 -6.637 -1.621 -2.848 1.733 -2.235 D 169 167 3 170 3 0 0 32 51 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 35 54 -1.553 -0.721 -4.253 0.000 0.000 0.000 0.000 [ MATL 53 ] 69 - G - - - ML 171 170 3 173 3 1 1 32 51 -7.983 -0.020 -6.637 0.080 -1.662 1.105 -1.069 D 172 170 3 173 3 0 0 31 50 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 70 - U - - - ML 174 173 3 176 3 1 1 31 50 -7.983 -0.020 -6.637 -1.521 -1.511 -2.257 1.628 D 175 173 3 176 3 0 0 30 49 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 71 - U - - - ML 177 176 3 179 3 1 1 30 49 -7.983 -0.020 -6.637 -1.521 -1.511 -2.257 1.628 D 178 176 3 179 3 0 0 29 48 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 72 - A - - - ML 180 179 3 182 3 1 1 29 48 -7.983 -0.020 -6.637 1.536 -1.875 -1.163 -1.395 D 181 179 3 182 3 0 0 28 47 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 73 - A - - - ML 183 182 3 185 3 1 1 28 47 -7.983 -0.020 -6.637 1.727 -2.410 -2.038 -1.956 D 184 182 3 185 3 0 0 27 46 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 74 - A - - - ML 186 185 3 188 3 1 1 27 46 -7.983 -0.020 -6.637 1.727 -2.410 -2.038 -1.956 D 187 185 3 188 3 0 0 26 45 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 75 - G - - - ML 189 188 3 191 3 1 1 26 45 -7.983 -0.020 -6.637 -1.621 -2.848 1.733 -2.235 D 190 188 3 191 3 0 0 25 44 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 76 - G - - - ML 192 191 3 194 3 1 1 25 43 -7.983 -0.020 -6.637 -1.621 -2.848 1.733 -2.235 D 193 191 3 194 3 0 0 24 43 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 77 - A - - - ML 195 194 3 197 3 1 1 23 42 -7.983 -0.020 -6.637 1.727 -2.410 -2.038 -1.956 D 196 194 3 197 3 0 0 22 41 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 78 - U - - - ML 198 197 3 200 3 1 1 22 41 -7.983 -0.020 -6.637 -1.521 -1.511 -2.257 1.628 D 199 197 3 200 3 0 0 21 40 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 79 - U - - - ML 201 200 3 203 3 1 1 21 40 -7.983 -0.020 -6.637 -1.521 -1.511 -2.257 1.628 D 202 200 3 203 3 0 0 20 39 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 80 - U - - - ML 204 203 3 206 3 1 1 20 39 -7.983 -0.020 -6.637 -1.521 -1.511 -2.257 1.628 D 205 203 3 206 3 0 0 19 38 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 81 - A - - - ML 207 206 3 209 3 1 1 19 37 -7.983 -0.096 -4.041 1.430 -1.526 -1.447 -0.757 D 208 206 3 209 3 0 0 18 37 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 82 - C - - - ML 210 209 3 212 3 1 1 18 36 -7.908 -0.021 -6.562 -1.606 1.586 -2.425 -1.047 D 211 209 3 212 3 0 0 17 35 -6.735 -0.909 -1.127 IL 212 212 3 212 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 83 - C - - - ML 213 212 3 215 3 1 1 16 35 -7.983 -0.020 -6.637 -1.788 1.637 -2.613 -1.192 D 214 212 3 215 3 0 0 16 34 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 84 - U - - - ML 216 215 3 218 3 1 1 15 33 -7.983 -0.020 -6.637 -1.521 -1.511 -2.257 1.628 D 217 215 3 218 3 0 0 15 33 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 85 - G - - - ML 219 218 3 221 3 1 1 13 31 -7.983 -0.020 -6.637 -1.621 -2.848 1.733 -2.235 D 220 218 3 221 3 0 0 13 32 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 86 - A - - - ML 222 221 3 224 2 1 1 1 1 * 0.000 1.727 -2.410 -2.038 -1.956 D 223 221 3 224 2 0 0 0 0 * 0.000 IL 224 224 3 224 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 71 ] - - - - - - E 225 224 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD93 ACC RF00606 DESC Small nucleolar RNA SNORD93 LENG 74 MAXL 194 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 08:12:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00606/CM NSEQ 17 EFFN 2.112549 CKSUM 2944947757 STATS LOCAL MSV -8.6844 0.71872 STATS LOCAL VITERBI -9.2698 0.71872 STATS LOCAL FORWARD -3.4561 0.71872 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.28434 1.64776 1.37995 1.27621 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 0.00000 * 1 2.50417 2.48629 3.01699 0.24068 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 2 2.51357 3.12394 0.18824 3.06566 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 3 2.51411 3.12455 0.18811 3.06652 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 4 3.08393 0.26974 2.84294 2.02202 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 5 3.08301 0.26985 2.84252 2.02187 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 6 0.30729 2.73077 2.21642 2.40360 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 7 0.35947 2.63799 2.03935 2.29921 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 8 1.76588 2.84924 0.37970 2.44173 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 9 2.58251 3.44359 0.17006 3.01897 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 10 0.17535 3.12576 2.86106 2.81805 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 11 2.50417 2.48629 3.01699 0.24068 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 12 2.58251 3.44359 0.17006 3.01897 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 13 0.17535 3.12576 2.86106 2.81805 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 14 1.41856 2.62192 0.55166 2.21384 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 15 0.17535 3.12576 2.86106 2.81805 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 16 0.17535 3.12576 2.86106 2.81805 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 17 1.90132 0.53382 2.61208 1.65608 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 18 1.64292 1.57774 2.29807 0.69376 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 19 1.61945 0.61317 2.50237 1.72334 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.13703 2.55941 2.98166 0.44860 1.01756 1.09861 0.40547 20 1.88654 1.88278 2.22363 0.53099 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04144 3.89725 3.89725 1.46634 0.26236 0.57420 0.82818 21 0.57042 1.96148 2.21775 1.68628 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 22 0.49462 2.31998 2.03426 1.82547 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 23 1.83606 1.76651 2.13419 0.59550 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 24 2.70868 0.23137 3.28273 2.27885 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 25 2.50417 2.48629 3.01699 0.24068 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 26 2.58251 3.44359 0.17006 3.01897 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 27 0.17535 3.12576 2.86106 2.81805 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07298 3.92879 2.98166 1.46634 0.26236 1.09861 0.40547 28 1.64215 1.87115 2.33029 0.58838 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04144 3.89725 3.89725 1.46634 0.26236 0.57420 0.82818 29 2.50417 2.48629 3.01699 0.24068 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 30 1.47408 1.94952 0.91982 1.46934 31 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 31 1.51999 1.96296 0.83151 1.58254 32 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 32 0.88213 1.82063 1.62592 1.48084 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 33 2.10932 1.82408 2.62198 0.43904 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.13063 2.58365 3.05847 0.87844 0.53688 1.09861 0.40547 34 0.81029 2.09260 1.55419 1.51166 37 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04128 3.90111 3.90111 1.46634 0.26236 1.47880 0.25866 35 2.08579 1.82650 2.59693 0.44580 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04128 3.90111 3.90111 1.46634 0.26236 1.47880 0.25866 36 1.30595 1.98401 0.86137 1.77795 39 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04128 3.90111 3.90111 1.46634 0.26236 1.47880 0.25866 37 2.34686 0.37748 2.92002 1.80296 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04128 3.90111 3.90111 1.46634 0.26236 1.47880 0.25866 38 2.45569 2.44624 2.96621 0.25350 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.27011 3.90111 1.53024 1.46634 0.26236 0.60848 0.78565 39 1.89225 1.73722 2.39331 0.54140 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04984 3.71694 3.71694 1.46634 0.26236 1.09007 0.40977 40 1.48926 0.93440 2.03076 1.38468 43 c - - _ 1.38629 1.38629 1.38629 1.38629 0.16538 2.04091 3.79347 2.13249 0.12618 2.24441 0.11204 41 1.58756 1.80559 2.24521 0.64380 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04608 3.79347 3.79347 1.46634 0.26236 0.45673 1.00334 42 1.43371 2.25385 0.76298 1.65910 58 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04134 3.89967 3.89967 1.46634 0.26236 1.49499 0.25393 43 2.01551 0.52505 2.23881 1.78001 59 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04134 3.89967 3.89967 1.46634 0.26236 1.49499 0.25393 44 1.93468 2.08864 2.17495 0.48117 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04134 3.89967 3.89967 1.46634 0.26236 0.59512 0.80184 45 1.92652 0.61148 2.00915 1.72770 61 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 46 2.50417 2.48629 3.01699 0.24068 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 47 2.58251 3.44359 0.17006 3.01897 63 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 48 0.17535 3.12576 2.86106 2.81805 64 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 49 2.50417 2.48629 3.01699 0.24068 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 50 2.58251 3.44359 0.17006 3.01897 66 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 51 2.58251 3.44359 0.17006 3.01897 67 G - - _ 1.38629 1.38629 1.38629 1.38629 0.07987 2.86301 3.92879 0.58724 0.81161 1.09861 0.40547 52 1.33789 2.57526 0.60348 2.16667 69 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 53 2.50417 2.48629 3.01699 0.24068 70 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 54 2.50417 2.48629 3.01699 0.24068 71 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 55 0.30729 2.73077 2.21642 2.40360 72 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 56 0.17535 3.12576 2.86106 2.81805 73 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 57 0.17535 3.12576 2.86106 2.81805 74 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 58 2.58251 3.44359 0.17006 3.01897 75 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 59 2.58251 3.44359 0.17006 3.01897 76 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 60 0.17535 3.12576 2.86106 2.81805 77 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 61 2.50417 2.48629 3.01699 0.24068 78 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 62 2.50417 2.48629 3.01699 0.24068 79 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 63 2.50417 2.48629 3.01699 0.24068 80 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 64 0.38102 2.47657 2.42493 1.93571 81 A - - _ 1.38629 1.38629 1.38629 1.38629 0.10000 3.92879 2.58365 1.46634 0.26236 1.09861 0.40547 65 2.57740 0.26476 3.14794 2.17422 82 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04255 3.87134 3.87134 1.46634 0.26236 0.41937 1.07136 66 2.70868 0.23137 3.28273 2.27885 83 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 67 2.50417 2.48629 3.01699 0.24068 84 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 68 2.58251 3.44359 0.17006 3.01897 85 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 69 0.17535 3.12576 2.86106 2.81805 86 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 70 2.29914 3.01072 0.23313 2.84127 87 G - - > 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 71 2.30005 3.01191 0.23284 2.84274 88 G - - > 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 72 3.28365 0.22107 2.96064 2.21583 89 C - - > 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 73 3.28897 0.22054 2.96290 2.21684 90 C - - > 1.38629 1.38629 1.38629 1.38629 0.04013 3.92879 3.92879 1.46634 0.26236 1.09861 0.40547 74 0.17535 3.12576 2.86106 2.81805 91 A - - : 1.38629 1.38629 1.38629 1.38629 0.02027 3.90892 * 1.46634 0.26236 0.00000 * //