# STOCKHOLM 1.0
#=GF ID SNORD90
#=GF AC RF00579
#=GF DE Small nucleolar RNA SNORD90
#=GF AU Marantidis E
#=GF GA 41.0
#=GF NC 40.9
#=GF TC 41.4
#=GF PI snoHBII-295
#=GF SE Marantidis E, INFERNAL
#=GF SS Predicted; RNAalifold
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 32.37 -Z 2958934 CM SEQDB
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Mus_musculus300974;
#=GF DR snoopy; Loxodonta_africana300518;
#=GF RN [1]
#=GF RM 11387227
#=GF RT RNomics: an experimental approach that identifies 201 candidates for
#=GF RT novel, small, non-messenger RNAs in mouse.
#=GF RA Huttenhofer A, Kiefmann M, Meier-Ewert S, O'Brien J, Lehrach H,
#=GF RA Bachellerie JP, Brosius J
#=GF RL EMBO J. 2001;20:2943-2953.
#=GF RN [2]
#=GF RM 16381836
#=GF RT snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box
#=GF RT snoRNAs.
#=GF RA Lestrade L, Weber MJ
#=GF RL Nucleic Acids Res. 2006;34:D158-D162.
#=GF CC snoRNA HBII-295 belongs to the family of C/D snoRNAs. It is the human
#=GF CC orthologue of the mouse MBII-295 and has no identified RNA target.
#=GF WK Small_nucleolar_RNA_SNORD90
#=GF SQ 18

AC007066.4/164516-164622     AAGU----UUUCUAAGUGUCUAAUGAUGA-AUUUCAUAGGGCAGAUUCUGAGGUGAAAA-UUUAAUUCAUCACUGAUACUCCUACUGUGGAAUCUGAAGACACUUGAAAACGU
AL929572.10/175094-174985    AAAUAAUGUUUUUAAGUGUCUAGUGAUGA-AUUUCAUAGGGCAGAUUCUGAGGUGAAAA-UUUAGUUCAUCAUUGAUUGUCCUAUUAUGAAAUCUGAAGACACUUGAAAAC-U
AAFC03111050.1/1381-1271     AAAUAAGUUUUCUAAGUGUCUAAUGAUGA-AUUUCAUAGGGCAGAUUCUGAGGUGAAAA-UUUAAUUCAUCAUUGAUACUUCUACUAUGGAAUCUGAAGACACUUGAAAACUU
AANN01135589.1/606-496       AAAUUAGAUUUUUAAGUGUCUAAUGAUGA-AUUUCAUAGGGCAGAUUCUGAGAUGAAAA-UUAAAUUCAUCACUGAUACUUCUACUGUGAAAUCUGAAGACACUUGAAAAACU
AAPY01745261.1/2883-2993     AAUUAAGUUUUCUAAGUGUCUGAUGAUGA-AUUUCAUAGGGCAGAUUCUGAGGUGAAAA-CUUAAUUCAUCAUUGAUCCUCCUACUAUGGAAUCUGAAGACACUUGAAAGCAU
AAQQ01358583.1/359-469       GAAUAUGUUUUCUAAGUGUCUAAUGAUGA-GUUUCAUAGGGCAGAUUCUGAGAUGAAAA-UUUACUUCAUCAUUGAUACUCCUACUAUGAAAUCUGAAGACACUUGAAAACCU
AANG01754084.1/1570-1461     AAAUAAGUUUUCUAAGUGUCUAAUGAUGA-AGUUCAUAGGGCAGAUUCUGAGGUGAAAA-UUUCAUUCAUCACUGAUACUCCU-CUAUGGAAUCUGAAGACACUUGAAAACCU
AALT01485923.1/23521-23411   AAAUAAGUUUUUAAAGUGUCUAAUGAUGA-AUUUCAUAGGGCAGAUUCUGAGAUGAAAA-UUGAAUUCAUCACUGAUACUUGUACUGUGAAAUCUGAAGACACUUAAAAACCU
AAYZ01222850.1/6201-6091     GAAGAAGUUUUUCAAGUGUCUCAUGAUGA-AUUUCAUAGGGCAGAUUCUGAGGUGAAAA-UUUGAUUCAUCACUGAUACCCUAACUGUGAAUUCUGAAGACACUUGAAAACAU
AAFR03041314.1/160264-160153 UUUUGAGUUUUCUAAGUGUCUCAUGAUGAAAUUUCAUAGGGCAGAUUCUGAGAUGGGAA-UUGAAUUCAUCACUGAUAAAUAUUCUGUGAAAUCUGAAGACACAUGAAAAACU
AAPN01152521.1/3015-3126     AAUUAAAGUGCUAAAGUGUCUAAUGAUGAGGACUCAUAGGGCAGAUUCUGAGGUGAGCA-CUGAACUCAUCACUGAUAAUUGUUUGAUGCGAUCUGAAGACACUUGAAAGUCU
ABRN01365187.1/5441-5547     AAGU----UUUCUAAGUGUCUAAUGAUGA-AUUUCAUAGGGCAGAUUCUGAGGUGAA-AAUUUAAUUCAUCAUUGAUACUCCUACUAUGGAAUCUGAAGACACUUGAAAACCU
AAKN02030304.1/77340-77450   AUAAAUGUUUUCUAAGUGUCUAAUGAUGA-GUUUCAUAGGGCAGAUUCUGAGGUGAAAA-UUUAGUUCAUCAUUGAUACUCUUUCUAUGGAAUCUGAAGACACUUCAAACCUA
AAWR02025687.1/6365-6255     AAAUAAGUUUUCUAAGUGUCUGAUGAUGA-AUUUCAUAGGGCAGAUUCUGAGGUGAAAA-UUUAAUUCAUCACUGAUAGUCCUACUAUGGAAUCUGAAGACGCUUGAAAAUCU
AABR05100080.1/101248-101138 AAUAAUGUUUUCUAAGUGUCUAGUGAUGA-AUUUCAUAGGGCAGAUUCUGAGGUGAAAA-UUUAAUUCAUCAUUGAUUGUCCUAUUAUGAAAUCUGAAGACACUUGAAAACUA
AAPE02031984.1/129452-129562 UAAUGAGUUUUCUGAGUGUCUAAUGAUGA-AUUUCAUAGGGCAGAUUCUGAGGUGAAAA-UCUAAUUCACCAUUGAUACUCCUACUAUGGAGUCUGAAGACACUUGAAAACCU
AAGW02054520.1/58849-58959   AAUUAAGUUUUCCAAGUGUCUCAUGAUGA-AUUUCAUAGGGCAGAUUCUGAGGUGAAAA-UUUAGUUCAUCGUUGAUACCCCUACUAUGGAUUCUGAAGACACUUGAAAACCU
AAEX03006906.1/50218-50328   AAGUAAAUUUUCUAAGUGUCUGAUGAUGA-AUUUCAUAGGGCAGAUUCUGAGGUGAAAA-UUGUAUUCAUCAUUGAUAGUCCUAUUAUGGAAUCUGAAGACACUUGGAAACCG
#=GC SS_cons                 ::::::::::::<<<<<<<<<--------.<<<<<<<<<<<--<--<<-<-<<<<<<__._____>>>>>>->->>>-->>>>--->>>>>>>---->>>>>>>>>:::::::
#=GC RF                      aAauAAguUUUccaaGuGuCuaAUGAUGA.auuuCauagGgCAgAUuCUgAGguGaaAA.UUuAAuuCacCAcUGauAccCcuacUauGaaauCUGAaGaCaCuugAAAAccu
//
