INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD66 ACC RF00572 DESC Small nucleolar RNA SNORD66 STATES 232 NODES 74 CLEN 76 W 94 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 16:36:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00572/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 2.280273 CKSUM 1129229089 NULL 0.000 0.000 0.000 0.000 GA 32.00 TC 32.00 NC 31.90 EFP7GF -9.4409 0.71866 ECMLC 0.71233 -5.32874 2.56438 1600000 331905 0.003615 ECMGC 0.39785 -19.89944 -6.24301 1600000 91558 0.004369 ECMLI 0.71659 -2.76311 4.68895 1600000 250237 0.004795 ECMGI 0.45946 -13.24691 -2.12605 1600000 66241 0.006039 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 94 114 -9.161 -9.101 -0.020 -7.877 -8.157 -8.552 IL 1 1 2 1 6 1 30 95 116 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 31 95 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 79 c g - - MP 3 2 3 7 6 2 33 94 114 -9.161 -9.101 -0.020 -7.877 -8.157 -8.552 -2.244 -2.361 -2.398 0.880 -1.354 -3.228 2.119 -2.554 -0.985 0.900 -2.983 -0.746 1.921 -2.550 0.204 -1.525 ML 4 2 3 7 6 1 28 92 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 27 92 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 23 90 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 30 93 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 30 93 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 78 U A - - MP 9 8 6 13 6 2 31 92 112 -9.161 -9.101 -0.020 -7.877 -8.157 -8.552 -4.145 -4.094 -4.003 -0.386 -2.931 -4.554 1.397 -3.650 -4.021 -0.154 -4.401 -2.102 3.284 -4.278 -0.005 -2.852 ML 10 8 6 13 6 1 27 90 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 26 90 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 22 88 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 29 91 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 29 91 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 77 C G - - MP 15 14 6 19 6 2 30 90 110 -9.161 -9.101 -0.020 -7.877 -8.157 -8.552 -3.345 -3.295 -3.364 0.265 -2.635 -4.060 3.099 -3.245 -3.385 0.526 -3.841 -1.384 1.227 -1.676 -0.386 -2.336 ML 16 14 6 19 6 1 26 89 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 25 88 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 22 86 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 27 89 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 27 89 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 76 C G - - MP 21 20 6 25 4 2 28 88 108 -7.085 -3.705 -0.157 -5.706 -4.081 -4.044 -3.868 -0.260 -2.661 -4.352 3.262 -3.426 -3.889 -0.040 -4.226 -2.030 1.209 -4.174 0.298 -2.736 ML 22 20 6 25 4 1 25 87 108 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 23 87 107 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 22 86 106 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 27 88 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 26 87 108 -1.664 -0.653 -4.364 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 27 26 6 29 3 1 26 85 106 -8.092 -0.019 -6.746 0.252 -0.902 0.106 0.260 D 28 26 6 29 3 0 21 84 104 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 25 87 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - c - - - ML 30 29 3 32 3 1 25 84 105 -8.092 -0.019 -6.746 -0.039 0.409 -0.489 -0.021 D 31 29 3 32 3 0 20 83 103 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 25 86 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 33 32 3 35 3 1 24 83 104 -8.092 -0.019 -6.746 -1.725 -1.680 -2.470 1.680 D 34 32 3 35 3 0 19 82 102 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 24 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 36 35 3 38 3 1 24 82 102 -8.092 -0.019 -6.746 -1.852 -3.112 1.778 -2.500 D 37 35 3 38 3 0 18 81 101 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 23 84 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 39 38 3 41 3 1 23 81 101 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 40 38 3 41 3 0 18 80 100 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 22 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 42 41 3 44 3 1 22 80 100 -8.092 -0.019 -6.746 -1.310 -1.050 -2.048 1.522 D 43 41 3 44 3 0 17 79 99 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 21 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 45 44 3 47 3 1 21 79 99 -8.092 -0.019 -6.746 -1.088 -2.557 1.634 -1.969 D 46 44 3 47 3 0 16 78 98 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 20 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 48 47 3 50 3 1 20 78 98 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 49 47 3 50 3 0 15 77 97 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 20 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 51 50 3 53 3 1 19 77 97 -8.092 -0.019 -6.746 -0.613 1.278 -1.841 -0.638 D 52 50 3 53 3 0 15 75 96 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 19 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 54 53 3 56 3 1 18 76 96 -8.092 -0.019 -6.746 -0.618 -0.355 -1.040 1.057 D 55 53 3 56 3 0 14 74 95 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 18 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 57 56 3 59 3 1 17 75 95 -8.092 -0.019 -6.746 -0.588 -0.416 -0.930 1.043 D 58 56 3 59 3 0 13 73 94 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 17 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - c - - - ML 60 59 3 62 3 1 17 74 94 -8.092 -0.089 -4.147 -0.532 0.819 -1.486 0.248 D 61 59 3 62 3 0 13 72 93 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 17 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - u - - - ML 63 62 3 65 3 1 16 73 93 -8.022 -0.020 -6.676 -0.326 -0.105 -0.983 0.821 D 64 62 3 65 3 0 12 72 92 -6.736 -0.908 -1.128 IL 65 65 3 65 3 1 16 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 66 65 3 68 3 1 15 72 92 -8.092 -0.019 -6.746 -0.229 -0.893 -0.813 1.028 D 67 65 3 68 3 0 10 70 91 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 15 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - g - - - ML 69 68 3 71 3 1 15 71 91 -5.315 -0.104 -4.493 -0.405 -0.724 0.779 -0.115 D 70 68 3 71 3 0 10 69 89 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 14 72 92 -1.518 -0.744 -4.218 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - U - - - ML 72 71 3 74 3 1 14 70 90 -8.040 -0.020 -6.695 -0.880 -1.184 -1.779 1.446 D 73 71 3 74 3 0 9 68 88 -6.612 -2.125 -0.395 IL 74 74 3 74 3 1 14 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - U - - - ML 75 74 3 77 3 1 14 69 89 -8.040 -0.020 -6.695 -0.648 -0.843 -1.559 1.302 D 76 74 3 77 3 0 8 67 87 -6.612 -1.026 -1.003 IL 77 77 3 77 3 1 13 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - a - - - ML 78 77 3 80 3 1 13 68 88 -8.092 -0.019 -6.746 0.840 -0.733 -1.076 0.182 D 79 77 3 80 3 0 7 66 86 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 12 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - - - ML 81 80 3 83 3 1 12 67 86 -8.092 -0.019 -6.746 -1.852 -3.112 1.778 -2.500 D 82 80 3 83 3 0 6 65 85 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 11 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - U - - - ML 84 83 3 86 3 1 11 65 85 -8.092 -0.019 -6.746 -0.313 -1.022 -1.476 1.229 D 85 83 3 86 3 0 5 64 84 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 10 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - G - - - ML 87 86 3 89 3 1 11 64 84 -8.092 -0.019 -6.746 -1.017 -2.505 1.616 -1.918 D 88 86 3 89 3 0 5 63 83 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 10 66 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - C - - - ML 90 89 3 92 3 1 10 63 83 -8.092 -0.019 -6.746 -2.055 1.699 -2.885 -1.405 D 91 89 3 92 3 0 4 62 82 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - C - - - ML 93 92 3 95 3 1 9 62 82 -8.092 -0.019 -6.746 -2.055 1.699 -2.885 -1.405 D 94 92 3 95 3 0 3 61 81 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 8 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - A - - - ML 96 95 3 98 3 1 9 61 81 -2.902 -0.223 -6.746 1.590 -2.041 -1.280 -1.582 D 97 95 3 98 3 0 3 59 79 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 8 62 82 -1.853 -0.555 -4.553 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - C - - - ML 99 98 3 101 3 1 8 60 80 -8.092 -0.019 -6.746 -1.560 1.515 -2.396 -0.706 D 100 98 3 101 3 0 2 58 78 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 7 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 32 - G - - - ML 102 101 3 104 3 1 7 59 79 -8.092 -0.019 -6.746 -0.827 -1.258 1.363 -1.164 D 103 101 3 104 3 0 1 57 77 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 33 - U - - - ML 105 104 3 107 3 1 7 58 77 -8.092 -0.019 -6.746 -1.725 -1.680 -2.470 1.680 D 106 104 3 107 3 0 0 56 76 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 5 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - G - - - ML 108 107 3 110 3 1 6 57 76 -8.092 -0.019 -6.746 -1.852 -3.112 1.778 -2.500 D 109 107 3 110 3 0 0 55 75 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 5 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 35 - U - - - ML 111 110 3 113 3 1 6 56 75 -8.092 -0.019 -6.746 -1.725 -1.680 -2.470 1.680 D 112 110 3 113 3 0 0 54 74 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 4 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - C - - - ML 114 113 3 116 3 1 5 55 74 -8.092 -0.019 -6.746 -2.055 1.699 -2.885 -1.405 D 115 113 3 116 3 0 0 53 73 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 3 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - U - - - ML 117 116 3 119 3 1 4 54 73 -8.092 -0.019 -6.746 -1.725 -1.680 -2.470 1.680 D 118 116 3 119 3 0 0 52 72 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 3 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - G - - - ML 120 119 3 122 3 1 4 52 72 -8.092 -0.019 -6.746 -1.852 -3.112 1.778 -2.500 D 121 119 3 122 3 0 0 51 71 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - G - - - ML 123 122 3 125 3 1 3 51 71 -8.092 -0.019 -6.746 -1.852 -3.112 1.778 -2.500 D 124 122 3 125 3 0 0 50 70 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - G - - - ML 126 125 3 128 3 1 3 50 70 -8.092 -0.019 -6.746 -1.852 -3.112 1.778 -2.500 D 127 125 3 128 3 0 0 49 69 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - C - - - ML 129 128 3 131 3 1 2 49 69 -8.092 -0.019 -6.746 -2.055 1.699 -2.885 -1.405 D 130 128 3 131 3 0 0 48 68 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - C - - - ML 132 131 3 134 3 1 2 48 68 -8.092 -0.019 -6.746 -2.055 1.699 -2.885 -1.405 D 133 131 3 134 3 0 0 47 67 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - A - - - ML 135 134 3 137 3 1 2 47 67 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 136 134 3 137 3 0 0 46 65 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - C - - - ML 138 137 3 140 3 1 1 46 66 -8.092 -0.019 -6.746 -2.055 1.699 -2.885 -1.405 D 139 137 3 140 3 0 0 45 64 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - U - - - ML 141 140 3 143 3 1 1 45 65 -8.092 -0.019 -6.746 -0.979 -1.145 -1.388 1.411 D 142 140 3 143 3 0 0 44 63 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - G - - - ML 144 143 3 146 3 1 1 44 63 -8.092 -0.019 -6.746 -1.852 -3.112 1.778 -2.500 D 145 143 3 146 3 0 0 43 62 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - A - - - ML 147 146 3 149 3 1 1 43 62 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 148 146 3 149 3 0 0 42 61 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - g - - - ML 150 149 3 152 3 1 1 42 61 -8.092 -0.019 -6.746 -0.014 -0.727 0.583 -0.141 D 151 149 3 152 3 0 0 41 60 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - a - - - ML 153 152 3 155 3 1 1 41 60 -8.092 -0.019 -6.746 0.899 -0.749 -1.091 0.099 D 154 152 3 155 3 0 0 40 59 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - c - - - ML 156 155 3 158 3 1 1 40 59 -8.092 -0.019 -6.746 -0.143 0.492 -0.628 0.057 D 157 155 3 158 3 0 0 38 58 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - c - - - ML 159 158 3 161 3 1 1 39 58 -8.092 -0.019 -6.746 0.111 0.676 -1.288 -0.132 D 160 158 3 161 3 0 0 37 57 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - u - - - ML 162 161 3 164 3 1 1 38 57 -8.092 -0.019 -6.746 -0.184 0.387 -1.040 0.406 D 163 161 3 164 3 0 0 36 56 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - c - - - ML 165 164 3 167 3 1 1 37 56 -8.092 -0.019 -6.746 -0.413 0.793 -1.111 0.075 D 166 164 3 167 3 0 0 35 55 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 54 - a - - - ML 168 167 3 170 3 1 1 35 55 -8.092 -0.019 -6.746 0.780 -0.823 0.031 -0.524 D 169 167 3 170 3 0 0 34 54 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 55 - U - - - ML 171 170 3 173 3 1 1 34 54 -8.092 -0.019 -6.746 -1.725 -1.680 -2.470 1.680 D 172 170 3 173 3 0 0 33 52 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 56 - G - - - ML 174 173 3 176 3 1 1 33 52 -8.092 -0.019 -6.746 -1.852 -3.112 1.778 -2.500 D 175 173 3 176 3 0 0 32 51 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - A - - - ML 177 176 3 179 3 1 1 32 51 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 178 176 3 179 3 0 0 31 50 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 58 - U - - - ML 180 179 3 182 3 1 1 31 50 -8.092 -0.019 -6.746 -1.725 -1.680 -2.470 1.680 D 181 179 3 182 3 0 0 30 49 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 59 - G - - - ML 183 182 3 185 3 1 1 30 49 -8.092 -0.019 -6.746 -1.852 -3.112 1.778 -2.500 D 184 182 3 185 3 0 0 29 48 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 60 - G - - - ML 186 185 3 188 3 1 1 29 48 -8.092 -0.019 -6.746 -1.852 -3.112 1.778 -2.500 D 187 185 3 188 3 0 0 28 47 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 61 - a - - - ML 189 188 3 191 3 1 1 28 47 -8.092 -0.019 -6.746 0.886 -0.685 -0.507 -0.274 D 190 188 3 191 3 0 0 27 46 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 62 - A - - - ML 192 191 3 194 3 1 1 27 46 -8.092 -0.019 -6.746 1.136 -1.302 -0.435 -0.605 D 193 191 3 194 3 0 0 26 45 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 63 - c - - - ML 195 194 3 197 3 1 1 26 45 -8.092 -0.019 -6.746 -0.084 0.495 -1.240 0.292 D 196 194 3 197 3 0 0 25 44 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 64 - U - - - ML 198 197 3 200 3 1 1 25 43 -8.092 -0.019 -6.746 -0.678 -0.832 -1.597 1.312 D 199 197 3 200 3 0 0 24 42 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 65 - G - - - ML 201 200 3 203 3 1 1 23 42 -8.092 -0.019 -6.746 -1.852 -3.112 1.778 -2.500 D 202 200 3 203 3 0 0 22 41 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 66 - A - - - ML 204 203 3 206 3 1 1 22 41 -8.092 -0.019 -6.746 1.769 -2.631 -2.237 -2.199 D 205 203 3 206 3 0 0 21 40 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 67 - G - - - ML 207 206 3 209 3 1 1 21 40 -8.092 -0.019 -6.746 -1.852 -3.112 1.778 -2.500 D 208 206 3 209 3 0 0 20 39 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 68 - G - - - ML 210 209 3 212 3 1 1 20 39 -8.092 -0.019 -6.746 -1.073 -2.546 1.630 -1.958 D 211 209 3 212 3 0 0 19 38 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 69 - A - - - ML 213 212 3 215 3 1 1 19 37 -8.092 -0.019 -6.746 1.570 -1.852 -1.716 -1.152 D 214 212 3 215 3 0 0 18 37 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 70 - U - - - ML 216 215 3 218 3 1 1 17 36 -8.092 -0.019 -6.746 -0.519 -0.664 -1.220 1.164 D 217 215 3 218 3 0 0 17 36 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 71 - C - - - ML 219 218 3 221 3 1 1 16 35 -8.092 -0.019 -6.746 -2.055 1.699 -2.885 -1.405 D 220 218 3 221 3 0 0 16 34 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 72 - U - - - ML 222 221 3 224 3 1 1 15 33 -8.092 -0.019 -6.746 -1.725 -1.680 -2.470 1.680 D 223 221 3 224 3 0 0 15 33 -6.174 -1.687 -0.566 IL 224 224 3 224 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 73 - G - - - ML 225 224 3 227 3 1 1 13 31 -8.092 -0.019 -6.746 -1.852 -3.112 1.778 -2.500 D 226 224 3 227 3 0 0 13 32 -6.174 -1.687 -0.566 IL 227 227 3 227 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 74 - A - - - ML 228 227 3 230 2 1 1 1 1 * 0.000 1.769 -2.631 -2.237 -2.199 D 229 227 3 230 2 0 0 0 0 * 0.000 IL 230 230 3 230 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 73 ] - - - - - - E 231 230 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD66 ACC RF00572 DESC Small nucleolar RNA SNORD66 LENG 76 MAXL 162 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 16:36:48 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00572/CM NSEQ 20 EFFN 2.485352 CKSUM 1129229089 STATS LOCAL MSV -9.1193 0.71866 STATS LOCAL VITERBI -9.2732 0.71866 STATS LOCAL FORWARD -3.8822 0.71866 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.43646 1.53729 1.26247 1.33061 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 0.00000 * 1 1.89005 1.15813 1.65024 1.07043 1 u - - < 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 2 2.89098 1.77236 2.64215 0.35192 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 3 2.39124 0.56980 2.12991 1.49612 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 4 2.76714 0.46789 2.52660 1.46574 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 5 1.21235 2.03059 1.30306 1.20549 5 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 6 1.42280 1.08630 1.72645 1.41229 6 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 7 2.67440 2.62744 3.19434 0.20114 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 8 2.77051 3.65783 0.13680 3.23312 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 9 0.14387 3.30784 3.02523 3.01879 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 10 2.36054 2.15205 2.87388 0.31074 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 11 2.19643 3.24381 0.23404 2.83950 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 12 0.14387 3.30784 3.02523 3.01879 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 13 1.84995 0.47047 2.73149 1.87780 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 14 1.84716 1.63869 2.12651 0.63709 14 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 15 1.82500 1.68271 2.04611 0.64688 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 16 1.78315 0.79612 2.45802 1.22006 16 c - - _ 1.38629 1.38629 1.38629 1.38629 0.09183 4.01013 2.66481 1.46634 0.26236 1.09861 0.40547 17 1.62930 1.45460 2.08352 0.80755 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03898 3.95728 3.95728 1.46634 0.26236 0.41931 1.07148 18 1.55981 2.03349 1.96273 0.65687 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 19 1.69581 1.90126 0.82110 1.48184 19 g - - _ 1.38629 1.38629 1.38629 1.38629 0.10317 3.18024 2.87443 0.72100 0.66605 1.09861 0.40547 20 2.04220 2.25527 2.67940 0.36125 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03844 3.97106 3.97106 1.46634 0.26236 1.63186 0.21762 21 1.87004 1.99998 2.51440 0.46262 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03844 3.97106 3.97106 1.46634 0.26236 0.49615 0.93871 22 0.79120 1.90879 2.15735 1.26298 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 23 2.77051 3.65783 0.13680 3.23312 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 24 1.62301 2.13328 2.45389 0.51368 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 25 2.14419 3.20526 0.24641 2.80200 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 26 2.92949 0.18539 3.50580 2.45606 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 27 2.92949 0.18539 3.50580 2.45606 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 28 0.26651 2.86643 2.30744 2.55704 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.19647 1.83104 4.01013 0.21270 1.65234 1.09861 0.40547 29 2.55387 0.31062 3.13751 1.92527 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 30 2.01496 2.28588 0.41478 2.25854 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 31 2.67440 2.62744 3.19434 0.20114 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 32 2.77051 3.65783 0.13680 3.23312 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 33 2.67440 2.62744 3.19434 0.20114 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 34 2.92949 0.18539 3.50579 2.45606 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 35 2.67440 2.62744 3.19434 0.20114 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 36 2.77051 3.65783 0.13680 3.23312 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 37 2.77051 3.65783 0.13680 3.23312 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 38 2.77051 3.65783 0.13680 3.23312 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 39 2.92949 0.18539 3.50579 2.45606 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 40 2.92949 0.18539 3.50579 2.45606 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 41 0.14387 3.30784 3.02523 3.01879 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 42 2.92949 0.18539 3.50580 2.45606 44 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 43 2.12158 2.22802 2.38893 0.38465 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 44 2.77051 3.65783 0.13680 3.23312 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 45 0.14387 3.30784 3.02523 3.01879 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 46 1.40860 1.90123 0.96099 1.49783 48 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 47 0.74950 1.91968 2.16888 1.32261 49 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 48 1.49779 1.02753 1.82686 1.35647 50 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 49 1.31438 0.89621 2.31382 1.49449 51 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 50 1.52605 1.10130 2.12653 1.10588 52 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 51 1.69616 0.81422 2.17982 1.34490 53 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 52 0.83559 1.96835 1.35685 1.77652 54 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 53 2.67440 2.62744 3.19434 0.20114 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 54 2.77051 3.65783 0.13680 3.23312 56 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 55 0.14387 3.30784 3.02523 3.01879 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 56 2.67440 2.62744 3.19434 0.20114 58 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 57 2.77051 3.65783 0.13680 3.23312 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 58 2.77051 3.65783 0.13680 3.23312 60 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 59 0.76041 1.86891 1.74507 1.59160 61 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 60 0.58430 2.32040 1.69270 1.83104 62 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 61 1.45446 1.02478 2.27570 1.18786 63 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 62 1.89123 1.99144 2.54151 0.45591 64 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 63 2.77051 3.65783 0.13680 3.23312 65 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 64 0.14387 3.30784 3.02523 3.01879 66 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 65 2.77051 3.65783 0.13680 3.23312 67 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 66 2.18528 3.23557 0.23662 2.83150 68 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 67 0.28022 2.72630 2.63559 2.23265 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 68 1.77306 1.86628 2.25983 0.56016 70 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 69 2.92949 0.18539 3.50580 2.45606 71 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 70 2.67440 2.62744 3.19434 0.20114 72 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 71 2.77051 3.65783 0.13680 3.23312 73 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 72 0.14387 3.30784 3.02523 3.01879 74 A - - _ 1.38629 1.38629 1.38629 1.38629 0.11432 2.40914 4.01013 0.36380 1.18753 1.09861 0.40547 73 1.83370 2.68975 0.36761 2.52707 76 G - - > 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 74 1.78955 2.15396 0.50616 2.17036 77 G - - > 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 75 0.43541 2.80900 1.50464 2.65015 78 A - - > 1.38629 1.38629 1.38629 1.38629 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 76 1.17127 1.93871 1.01174 1.70073 79 g - - > 1.38629 1.38629 1.38629 1.38629 0.01864 3.99184 * 1.46634 0.26236 0.00000 * //