INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD65 ACC RF00571 DESC Small nucleolar RNA SNORD65 STATES 223 NODES 75 CLEN 73 W 153 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 19:02:13 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00571/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 3.849854 CKSUM 3690340972 NULL 0.000 0.000 0.000 0.000 GA 41.00 TC 41.00 NC 40.90 EFP7GF -10.0601 0.71868 ECMLC 0.64008 -9.68002 -0.00003 1600000 588937 0.002038 ECMGC 0.40288 -16.91991 -4.17588 1600000 67897 0.005891 ECMLI 0.57877 -8.27319 1.69588 1600000 384579 0.003120 ECMGI 0.44057 -9.31983 1.71010 1600000 51582 0.007755 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 153 236 -7.576 -7.783 -0.034 -6.197 IL 1 1 2 1 4 2 31 155 239 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 30 155 238 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 3 30 153 237 -5.919 -0.048 -5.919 0.687 -0.237 -0.363 -0.387 D 4 2 3 5 3 0 25 150 233 -11.551 -1.585 -0.585 IL 5 5 3 5 3 4 32 160 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 2 29 152 235 -5.919 -0.048 -5.919 1.009 -0.694 -0.731 -0.383 D 7 5 3 8 3 0 25 149 232 -11.551 -1.585 -0.585 IL 8 8 3 8 3 3 31 159 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 2 29 151 234 -5.919 -0.048 -5.919 0.965 -1.139 -0.110 -0.584 D 10 8 3 11 3 0 24 148 231 -11.551 -1.585 -0.585 IL 11 11 3 11 3 3 30 157 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 2 28 150 232 -5.919 -0.048 -5.919 -2.371 -1.922 -2.557 1.754 D 13 11 3 14 3 0 23 147 229 -11.551 -1.585 -0.585 IL 14 14 3 14 3 3 30 156 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 27 148 231 -5.919 -0.048 -5.919 -1.235 -2.675 1.689 -2.363 D 16 14 3 17 3 0 22 145 228 -11.551 -1.585 -0.585 IL 17 17 3 17 3 2 29 155 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 27 147 230 -5.919 -0.048 -5.919 1.848 -3.084 -2.789 -2.868 D 19 17 3 20 3 0 22 144 226 -11.551 -1.585 -0.585 IL 20 20 3 20 3 2 28 154 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 26 146 228 -5.919 -0.048 -5.919 -2.371 -1.922 -2.557 1.754 D 22 20 3 23 3 0 21 143 225 -11.551 -1.585 -0.585 IL 23 23 3 23 3 2 27 152 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 25 145 227 -5.919 -0.048 -5.919 -1.299 -2.709 1.701 -2.399 D 25 23 3 26 3 0 20 141 224 -11.551 -1.585 -0.585 IL 26 26 3 26 3 2 27 151 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 24 143 225 -5.919 -0.048 -5.919 1.516 -1.057 -1.793 -1.431 D 28 26 3 29 3 0 20 140 222 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 26 150 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - a - - - ML 30 29 3 32 3 1 24 142 224 -5.919 -0.048 -5.919 0.841 -1.081 0.019 -0.469 D 31 29 3 32 3 0 19 139 221 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 25 149 232 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 23 141 223 -5.919 -0.048 -5.919 1.278 -0.902 -0.908 -0.981 D 34 32 3 35 3 0 18 138 219 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 25 147 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - u - - - ML 36 35 3 38 3 1 22 139 221 -5.919 -0.048 -5.919 -0.406 -0.544 -0.770 0.980 D 37 35 3 38 3 0 17 136 218 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 24 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - c - - - ML 39 38 3 41 3 1 22 138 220 -5.919 -0.048 -5.919 -0.439 0.954 -1.281 -0.131 D 40 38 3 41 3 0 17 135 216 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 23 145 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 21 137 218 -3.508 -0.159 -5.919 1.073 -0.827 -0.659 -0.517 D 43 41 3 44 3 0 16 134 215 -11.551 -1.585 -0.585 IL 44 44 3 44 3 2 22 139 220 -0.704 -1.373 -13.469 0.000 0.000 0.000 0.000 [ MATL 15 ] 18 - C - - - ML 45 44 3 47 3 1 20 135 217 -5.919 -0.048 -5.919 -0.656 1.434 -1.952 -1.307 D 46 44 3 47 3 0 15 132 214 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 22 142 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 19 - C - - - ML 48 47 3 50 3 1 20 134 216 -5.919 -0.048 -5.919 -2.049 1.518 -2.282 -0.537 D 49 47 3 50 3 0 15 131 212 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 21 141 223 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 20 - c - - - ML 51 50 3 53 3 1 19 133 214 -5.919 -0.048 -5.919 -0.417 0.593 -0.566 0.094 D 52 50 3 53 3 0 14 130 211 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 20 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 21 - A - - - ML 54 53 3 56 3 1 18 132 213 -3.317 -0.179 -5.919 1.089 -0.388 -0.894 -0.809 D 55 53 3 56 3 0 13 129 210 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 19 131 213 -4.737 -0.055 -12.380 0.000 0.000 0.000 0.000 [ MATL 19 ] 23 - A - - - ML 57 56 3 59 3 1 18 130 212 -5.919 -0.048 -5.919 1.848 -3.084 -2.789 -2.868 D 58 56 3 59 3 0 13 127 208 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 19 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 24 - A - - - ML 60 59 3 62 3 1 17 129 210 -5.919 -0.048 -5.919 1.848 -3.084 -2.789 -2.868 D 61 59 3 62 3 0 12 126 207 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 18 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 25 - A - - - ML 63 62 3 65 3 1 16 128 209 -5.919 -0.048 -5.919 1.409 -1.149 -1.139 -1.187 D 64 62 3 65 3 0 11 125 205 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 18 135 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 26 - U - - - ML 66 65 3 68 3 1 16 127 207 -5.919 -0.048 -5.919 -0.815 -0.536 -1.387 1.239 D 67 65 3 68 3 0 11 123 204 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 17 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 27 - A - - - ML 69 68 3 71 3 1 15 125 206 -5.919 -0.048 -5.919 1.848 -3.084 -2.789 -2.868 D 70 68 3 71 3 0 10 122 202 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 17 132 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 28 - G - - - ML 72 71 3 74 3 1 14 124 204 -5.919 -0.048 -5.919 -2.265 -3.229 1.830 -2.954 D 73 71 3 74 3 0 10 121 201 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 16 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 29 - C - - - ML 75 74 3 77 3 1 14 123 203 -5.919 -0.048 -5.919 -2.634 1.781 -2.869 -1.908 D 76 74 3 77 3 0 9 119 199 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 15 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 30 - U - - - ML 78 77 3 80 3 1 13 121 201 -5.919 -0.048 -5.919 -2.371 -1.922 -2.557 1.754 D 79 77 3 80 3 0 8 118 198 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 15 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 31 - G - - - ML 81 80 3 83 3 1 13 120 200 -5.919 -0.048 -5.919 -1.173 -2.642 1.677 -2.327 D 82 80 3 83 3 0 8 117 196 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 14 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 32 - G - - - ML 84 83 3 86 3 1 12 119 198 -5.919 -0.048 -5.919 -1.578 -2.286 1.629 -1.443 D 85 83 3 86 3 0 7 115 195 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 13 126 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 33 - A - - - ML 87 86 3 89 3 1 11 117 197 -5.919 -0.048 -5.919 1.848 -3.084 -2.789 -2.868 D 88 86 3 89 3 0 7 114 193 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 13 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 34 - A - - - ML 90 89 3 92 3 1 11 116 195 -5.919 -0.048 -5.919 1.848 -3.084 -2.789 -2.868 D 91 89 3 92 3 0 6 113 192 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 12 123 203 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 35 - U - - - ML 93 92 3 95 3 1 10 115 194 -5.919 -0.048 -5.919 -2.371 -1.922 -2.557 1.754 D 94 92 3 95 3 0 5 111 190 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 12 122 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 36 - U - - - ML 96 95 3 98 3 1 10 113 192 -5.919 -0.048 -5.919 -1.848 -0.862 -2.055 1.552 D 97 95 3 98 3 0 5 110 189 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 11 120 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 37 - A - - - ML 99 98 3 101 3 1 9 112 191 -5.919 -0.048 -5.919 1.848 -3.084 -2.789 -2.868 D 100 98 3 101 3 0 4 109 187 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 10 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 38 - C - - - ML 102 101 3 104 3 1 8 111 189 -5.919 -0.048 -5.919 -2.634 1.781 -2.869 -1.908 D 103 101 3 104 3 0 4 107 186 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 10 118 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 39 - C - - - ML 105 104 3 107 3 1 8 109 188 -5.919 -0.048 -5.919 -1.888 1.391 -2.107 -0.193 D 106 104 3 107 3 0 3 106 184 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 9 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - G - - - ML 108 107 3 110 3 1 7 108 186 -5.919 -0.048 -5.919 -0.591 -2.326 1.529 -1.989 D 109 107 3 110 3 0 3 105 183 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 9 115 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - G - - - ML 111 110 3 113 3 1 7 106 185 -5.919 -0.048 -5.919 -1.626 -2.365 1.655 -1.587 D 112 110 3 113 3 0 2 103 181 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 8 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - C - - - ML 114 113 3 116 3 1 6 105 183 -5.919 -0.048 -5.919 -2.634 1.781 -2.869 -1.908 D 115 113 3 116 3 0 2 102 180 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 8 112 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - A - - - ML 117 116 3 119 3 1 6 104 182 -5.919 -0.048 -5.919 1.848 -3.084 -2.789 -2.868 D 118 116 3 119 3 0 1 100 178 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 7 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - G - - - ML 120 119 3 122 3 1 5 102 180 -5.919 -0.048 -5.919 -1.173 -2.642 1.677 -2.327 D 121 119 3 122 3 0 1 99 177 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 6 110 188 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - A - - - ML 123 122 3 125 3 1 4 101 179 -5.919 -0.048 -5.919 1.848 -3.084 -2.789 -2.868 D 124 122 3 125 3 0 1 98 175 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 5 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 46 - U - - - ML 126 125 3 128 3 1 4 100 177 -5.919 -0.048 -5.919 -1.388 -1.353 -0.626 1.366 D 127 125 3 128 3 0 0 96 174 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 5 107 185 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 47 - U - - - ML 129 128 3 131 3 1 3 98 175 -5.919 -0.048 -5.919 -1.334 -1.321 -0.515 1.324 D 130 128 3 131 3 0 0 95 172 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 4 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - G - - - ML 132 131 3 134 3 1 2 97 174 -5.919 -0.251 -2.807 -0.331 -1.031 1.084 -0.749 D 133 131 3 134 3 0 0 94 171 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 4 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - U - - - ML 135 134 3 137 3 1 2 95 172 -5.724 -0.056 -5.724 -0.561 -1.143 -1.370 1.312 D 136 134 3 137 3 0 0 93 170 -13.378 -0.524 -1.715 IL 137 137 3 137 3 1 3 103 181 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - g - - - ML 138 137 3 140 3 1 2 94 171 -5.889 -0.050 -5.889 -0.117 -0.662 0.763 -0.417 D 139 137 3 140 3 0 0 91 168 -12.051 -0.920 -1.085 IL 140 140 3 140 3 1 3 102 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - U - - - ML 141 140 3 143 3 1 2 93 169 -5.919 -0.048 -5.919 -1.527 0.196 -1.718 1.140 D 142 140 3 143 3 0 0 89 165 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 3 100 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - a - - - ML 144 143 3 146 3 1 1 91 167 -5.919 -0.048 -5.919 0.920 -0.766 -0.128 -0.723 D 145 143 3 146 3 0 0 88 164 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 2 99 176 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - G - - - ML 147 146 3 149 3 1 1 90 166 -5.919 -0.048 -5.919 -1.206 -2.660 1.683 -2.346 D 148 146 3 149 3 0 0 86 162 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 2 97 174 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 54 - U - - - ML 150 149 3 152 3 1 1 88 164 -5.919 -0.048 -5.919 -1.871 -0.915 -2.078 1.565 D 151 149 3 152 3 0 0 85 160 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 2 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 55 - G - - - ML 153 152 3 155 3 1 1 87 162 -5.919 -0.048 -5.919 -1.235 -2.675 1.689 -2.363 D 154 152 3 155 3 0 0 83 159 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 95 171 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 56 - G - - - ML 156 155 3 158 3 1 1 85 161 -5.919 -0.048 -5.919 -0.946 -1.905 1.461 -1.118 D 157 155 3 158 3 0 0 82 157 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 57 - U - - - ML 159 158 3 161 3 1 1 84 159 -5.919 -0.048 -5.919 -1.860 -0.890 -2.067 1.559 D 160 158 3 161 3 0 0 80 155 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 92 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 58 - G - - - ML 162 161 3 164 3 1 1 82 157 -5.919 -0.048 -5.919 -0.633 -2.350 1.542 -2.013 D 163 161 3 164 3 0 0 79 154 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 90 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - A - - - ML 165 164 3 167 3 1 1 81 155 -5.919 -0.083 -4.655 1.848 -3.084 -2.789 -2.868 D 166 164 3 167 3 0 0 78 152 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 89 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 60 - a - - - ML 168 167 3 170 3 1 1 79 154 -5.885 -0.050 -5.885 0.466 -0.583 0.406 -0.675 D 169 167 3 170 3 0 0 76 151 -12.104 -0.875 -1.138 IL 170 170 3 170 3 1 1 87 163 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 61 - C - - - ML 171 170 3 173 3 1 1 78 152 -5.919 -0.048 -5.919 -1.784 1.286 -1.995 0.028 D 172 170 3 173 3 0 0 74 148 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 86 161 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 62 - C - - - ML 174 173 3 176 3 1 1 76 150 -5.919 -0.136 -3.770 -0.822 1.279 -1.246 -0.769 D 175 173 3 176 3 0 0 73 147 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 63 - U - - - ML 177 176 3 179 3 1 1 74 148 -5.835 -0.051 -5.835 -1.479 -0.134 -1.668 1.272 D 178 176 3 179 3 0 0 72 146 -12.652 -0.537 -1.686 IL 179 179 3 179 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 64 - a - - - ML 180 179 3 182 3 1 1 73 146 -4.810 -0.322 -2.606 0.718 -0.884 0.292 -0.763 D 181 179 3 182 3 0 0 70 144 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 73 147 -2.826 -0.221 -10.470 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - u - - - ML 183 182 3 185 3 1 1 72 146 -5.688 -0.057 -5.688 -0.407 0.137 -0.646 0.592 D 184 182 3 185 3 0 0 69 142 -13.543 -1.166 -0.851 IL 185 185 3 185 3 1 1 81 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - G - - - ML 186 185 3 188 3 1 1 70 143 -5.804 -0.053 -5.804 -0.610 -2.173 1.508 -1.836 D 187 185 3 188 3 0 0 68 141 -12.895 -0.440 -1.929 IL 188 188 3 188 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 68 - G - - - ML 189 188 3 191 3 1 1 69 141 -5.919 -0.048 -5.919 -0.627 -1.790 1.376 -1.094 D 190 188 3 191 3 0 0 65 137 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 78 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 69 - U - - - ML 192 191 3 194 3 1 1 67 139 -5.919 -0.048 -5.919 -2.371 -1.922 -2.557 1.754 D 193 191 3 194 3 0 0 63 135 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 70 - U - - - ML 195 194 3 197 3 1 1 65 137 -5.919 -0.048 -5.919 -1.938 -1.067 -2.146 1.602 D 196 194 3 197 3 0 0 61 133 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 71 - U - - - ML 198 197 3 200 3 1 1 63 135 -5.919 -0.048 -5.919 -1.835 -0.829 -2.041 1.543 D 199 197 3 200 3 0 0 59 130 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 73 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 72 - U - - - ML 201 200 3 203 3 1 1 61 133 -5.919 -0.048 -5.919 -1.927 -1.044 -2.136 1.597 D 202 200 3 203 3 0 0 57 128 -11.551 -1.585 -0.585 IL 203 203 3 203 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 73 - C - - - ML 204 203 3 206 3 1 1 59 130 -5.919 -0.048 -5.919 -2.634 1.781 -2.869 -1.908 D 205 203 3 206 3 0 0 54 125 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 74 - U - - - ML 207 206 3 209 3 1 1 57 128 -5.919 -0.048 -5.919 -2.371 -1.922 -2.557 1.754 D 208 206 3 209 3 0 0 52 122 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 75 - G - - - ML 210 209 3 212 3 1 1 54 125 -5.919 -0.048 -5.919 -2.265 -3.229 1.830 -2.954 D 211 209 3 212 3 0 0 48 118 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 76 - A - - - ML 213 212 3 215 3 1 1 52 121 -5.919 -0.130 -3.838 1.848 -3.084 -2.789 -2.868 D 214 212 3 215 3 0 0 44 113 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 77 - A - - - ML 216 215 3 218 3 1 1 48 117 -5.840 -0.051 -5.840 1.354 -1.731 -0.390 -1.398 D 217 215 3 218 3 0 0 29 98 -12.605 -2.640 -0.253 IL 218 218 3 218 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 78 - G - - - ML 219 218 3 221 2 1 1 1 1 * 0.000 -1.320 -1.839 1.455 -0.788 D 220 218 3 221 2 0 0 0 0 * 0.000 IL 221 221 3 221 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 74 ] - - - - - - E 222 221 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD65 ACC RF00571 DESC Small nucleolar RNA SNORD65 LENG 73 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Sat Jul 13 19:02:13 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00571/CM NSEQ 26 EFFN 3.849854 CKSUM 3690340972 STATS LOCAL MSV -7.9695 0.71868 STATS LOCAL VITERBI -9.2113 0.71868 STATS LOCAL FORWARD -3.8273 0.71868 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22582 1.66606 1.37253 1.33170 1.38629 1.38629 1.38629 1.38629 0.01947 5.25124 4.26606 0.39730 1.11515 0.00000 * 1 0.91042 1.55084 1.63776 1.65463 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 2 0.68677 1.86763 1.89313 1.65177 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 3 0.71725 2.17595 1.46254 1.79120 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 4 3.02995 2.71829 3.15849 0.17055 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 5 2.24261 3.24059 0.21559 3.02387 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 6 0.10527 3.52369 3.31926 3.37424 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 7 3.02995 2.71829 3.15849 0.17055 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 8 2.28668 3.26412 0.20730 3.04935 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 9 0.33558 2.11863 2.62924 2.37789 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 10 0.80346 2.13538 1.37280 1.71131 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 11 0.50040 2.01166 2.01542 2.06608 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 12 1.66775 1.76303 1.92008 0.70682 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 13 1.69068 0.72488 2.27387 1.47704 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 14 0.64246 1.95961 1.84296 1.74443 - A - - : 1.38629 1.38629 1.38629 1.38629 0.11031 2.43142 4.10262 0.95159 0.48797 1.09861 0.40547 15 1.84096 0.39204 2.73962 2.29201 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 16 2.80671 0.33432 2.96783 1.75820 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 17 1.67536 0.97529 1.77856 1.32127 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 18 0.63162 1.65510 2.00601 1.94722 - A - - : 1.38629 1.38629 1.38629 1.38629 0.12429 2.29908 4.10262 0.03824 3.28299 1.09861 0.40547 19 0.10527 3.52369 3.31926 3.37424 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 20 0.10527 3.52369 3.31926 3.37424 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 21 0.40966 2.18246 2.17546 2.20907 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 22 1.95099 1.75791 2.34803 0.52780 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 23 0.10527 3.52369 3.31926 3.37424 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 24 2.95608 3.62450 0.11759 3.43404 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 25 3.21218 0.15211 3.37528 2.70868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 26 3.02995 2.71829 3.15849 0.17055 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 27 2.19958 3.21761 0.22407 2.99900 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 28 2.48013 2.97069 0.25739 2.38671 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 29 0.10527 3.52369 3.31926 3.37424 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 30 0.10527 3.52369 3.31926 3.37424 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 31 3.02995 2.71829 3.15849 0.17055 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 32 2.66756 1.98399 2.81058 0.31076 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 33 0.10527 3.52369 3.31926 3.37424 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 34 3.21218 0.15211 3.37528 2.70868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 35 2.69463 0.42209 2.84651 1.52000 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 36 1.79619 2.99885 0.32680 2.76469 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 37 2.51358 3.02589 0.23919 2.48599 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 38 3.21218 0.15211 3.37528 2.70868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 39 0.10527 3.52369 3.31926 3.37424 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 40 2.19958 3.21761 0.22407 2.99900 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 41 0.10527 3.52369 3.31926 3.37424 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 42 2.34826 2.32382 1.82038 0.43912 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 43 2.31110 2.30222 1.74313 0.46866 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 44 1.61551 2.10126 0.63466 1.90519 - G - - : 1.38629 1.38629 1.38629 1.38629 0.17371 4.10262 1.94541 1.46634 0.26236 1.09861 0.40547 45 1.77520 2.17874 2.33625 0.47694 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03858 3.96749 3.96749 1.46634 0.26236 0.36326 1.18877 46 1.46708 1.84542 0.85744 1.67560 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03433 4.08186 4.08186 1.46634 0.26236 0.63745 0.75213 47 2.44441 1.25033 2.57698 0.59636 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 48 0.74884 1.91759 1.47528 1.88777 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 49 2.22244 3.22982 0.21951 3.01221 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 50 2.68289 2.02032 2.82638 0.30138 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 51 2.24261 3.24059 0.21559 3.02387 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 52 2.04196 2.70651 0.37353 2.16150 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 53 2.67570 2.00338 2.81898 0.30572 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 54 1.82529 3.01503 0.31765 2.78180 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 55 0.10527 3.52369 3.31926 3.37424 - A - - : 1.38629 1.38629 1.38629 1.38629 0.05786 4.10262 3.22671 1.46634 0.26236 1.09861 0.40547 56 1.06345 1.79008 1.10503 1.85413 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03443 4.07919 4.07919 1.46634 0.26236 0.60593 0.78870 57 2.62317 0.49468 2.76940 1.36665 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 58 1.95621 0.50010 2.25014 1.91902 - C - - : 1.38629 1.38629 1.38629 1.38629 0.09410 4.10262 2.61346 1.46634 0.26236 1.09861 0.40547 59 2.41116 1.47897 2.54281 0.50456 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03568 4.04419 4.04419 1.46634 0.26236 0.37234 1.16835 60 0.88885 1.99887 1.18384 1.91541 - a - - : 1.38629 1.38629 1.38629 1.38629 0.22296 3.33384 1.80668 0.15214 1.95807 1.09861 0.40547 61 1.66825 1.29147 1.83432 0.97595 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03956 3.94284 3.94284 1.46634 0.26236 0.80818 0.58999 62 1.80930 2.89259 0.34137 2.65918 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03644 4.02326 4.02326 1.46634 0.26236 0.30467 1.33701 63 1.82106 2.62723 0.43266 2.14484 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 64 3.02995 2.71829 3.15849 0.17055 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 65 2.72935 2.12603 2.87375 0.27583 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 66 2.65798 1.96092 2.80068 0.31689 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 67 2.72224 2.11025 2.86655 0.27949 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 68 3.21218 0.15211 3.37528 2.70868 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 69 3.02995 2.71829 3.15849 0.17055 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 70 2.95608 3.62450 0.11759 3.43404 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03362 4.10262 4.10262 1.46634 0.26236 1.09861 0.40547 71 0.10527 3.52369 3.31926 3.37424 - A - - : 1.38629 1.38629 1.38629 1.38629 0.09043 4.10262 2.66023 1.46634 0.26236 1.09861 0.40547 72 0.44779 2.58645 1.65663 2.35498 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03555 4.04774 4.04774 1.46634 0.26236 1.82951 0.17494 73 2.30119 2.66094 0.37804 1.93260 - G - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //