INFERNAL1/a [1.1.4 | Dec 2020] NAME SNORD19 ACC RF00569 DESC Small nucleolar RNA SNORD19 STATES 232 NODES 74 CLEN 76 W 95 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:48:33 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 22 EFFN 2.322998 CKSUM 2219234072 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.80 EFP7GF -8.8853 0.71865 ECMLC 0.65760 -5.74691 2.95174 1600000 365958 0.003279 ECMGC 0.39790 -16.91285 -3.49954 1600000 83167 0.004810 ECMLI 0.57658 -3.74824 4.95091 1600000 180921 0.006633 ECMGI 0.42049 -11.40996 0.43105 1600000 58133 0.006881 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 95 115 -7.005 -8.251 -0.073 -4.704 IL 1 1 2 1 4 1 30 96 117 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 31 97 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 85 - C - - MR 3 2 3 5 3 1 31 95 115 -8.488 -0.017 -6.806 -1.196 1.272 -2.033 -0.144 D 4 2 3 5 3 0 26 93 114 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 30 96 116 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 84 - C - - MR 6 5 3 8 3 1 30 94 114 -8.488 -0.017 -6.806 -0.726 1.018 -0.997 -0.203 D 7 5 3 8 3 0 25 92 113 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 30 95 115 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 83 - g - - MR 9 8 3 11 3 1 30 93 113 -8.488 -0.017 -6.806 0.222 -0.972 0.754 -0.650 D 10 8 3 11 3 0 24 91 112 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 29 94 114 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 82 - A - - MR 12 11 3 14 3 1 29 92 112 -8.488 -0.042 -5.282 1.046 -0.897 -0.908 -0.208 D 13 11 3 14 3 0 23 90 111 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 28 93 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 81 - a - - MR 15 14 3 17 3 1 28 91 111 -8.464 -0.017 -6.782 0.617 -0.768 -0.236 0.043 D 16 14 3 17 3 0 22 89 110 -6.596 -1.773 -0.520 IR 17 17 3 17 3 1 27 92 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 80 - a - - MR 18 17 3 20 3 1 28 90 110 -8.464 -0.017 -6.782 0.956 -0.752 -0.538 -0.362 D 19 17 3 20 3 0 21 88 109 -6.596 -1.773 -0.520 IR 20 20 3 20 3 1 27 91 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 79 - c - - MR 21 20 3 23 3 1 27 89 109 -8.464 -0.017 -6.782 -0.064 0.595 -1.262 0.159 D 22 20 3 23 3 0 21 87 108 -6.596 -1.233 -0.825 IR 23 23 3 23 3 1 26 90 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 78 - g - - MR 24 23 3 26 3 1 26 88 108 -8.488 -0.017 -6.806 0.049 -1.026 0.901 -0.721 D 25 23 3 26 3 0 20 86 107 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 25 89 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 77 - A - - MR 27 26 3 29 5 1 26 87 107 -7.219 -0.036 -7.034 -7.246 -8.138 1.774 -2.661 -2.264 -2.232 D 28 26 3 29 5 0 19 85 106 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 23 87 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 1 76 G C - - MP 30 29 3 34 6 2 26 86 106 -9.168 -9.107 -0.020 -7.884 -8.163 -8.558 -3.369 -2.556 -3.425 0.788 -3.715 -1.966 0.353 -3.851 -2.020 3.246 -3.893 -0.454 0.092 -3.329 -1.464 -2.512 ML 31 29 3 34 6 1 20 84 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 20 84 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 15 82 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 22 85 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 22 85 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 2 75 A U - - MP 36 35 6 40 6 2 24 84 104 -9.168 -9.107 -0.020 -7.884 -8.163 -8.558 -4.055 -3.021 -4.051 3.478 -4.524 -5.615 -0.206 -4.075 -3.935 0.794 -4.495 -0.457 -0.623 -4.757 -2.146 -2.871 ML 37 35 6 40 6 1 20 82 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 19 82 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 15 80 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 21 83 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 21 83 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 3 74 G C - - MP 42 41 6 46 6 2 22 82 102 -9.168 -9.107 -0.020 -7.884 -8.163 -8.558 -3.351 -2.483 -3.374 0.915 -3.765 -2.219 0.377 -3.842 -3.502 3.204 -3.891 -0.339 0.122 -1.808 -1.455 -2.449 ML 43 41 6 46 6 1 19 81 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 17 81 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 15 79 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 20 82 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 20 81 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 4 73 G C - - MP 48 47 6 52 4 2 20 80 100 -7.101 -7.308 -0.048 -5.722 -3.906 -2.697 -3.875 0.817 -4.320 -4.347 0.613 -4.261 -3.922 3.275 -4.278 -0.000 -0.062 -3.761 -1.739 -2.811 ML 49 47 6 52 4 1 18 80 101 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 4 1 16 79 100 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 51 47 6 52 4 0 14 78 99 -4.568 -4.250 -2.265 -0.520 IL 52 52 5 52 4 1 19 81 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 53 53 6 53 3 1 19 80 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 5 - U - - - ML 54 53 6 56 3 1 19 78 98 -8.107 -0.019 -6.761 -0.369 -0.750 -1.067 1.107 D 55 53 6 56 3 0 14 76 97 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 18 79 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 6 - A - - - ML 57 56 3 59 3 1 18 77 97 -8.107 -0.019 -6.761 1.589 -2.047 -1.264 -1.589 D 58 56 3 59 3 0 13 75 96 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 17 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 7 - U - - - ML 60 59 3 62 3 1 17 76 96 -8.107 -0.019 -6.761 -1.754 -1.704 -2.500 1.687 D 61 59 3 62 3 0 12 74 94 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 17 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 8 - G - - - ML 63 62 3 65 3 1 16 75 95 -8.107 -0.019 -6.761 -1.883 -3.147 1.784 -2.535 D 64 62 3 65 3 0 11 73 93 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 16 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 9 - A - - - ML 66 65 3 68 3 1 16 73 94 -8.107 -0.019 -6.761 1.774 -2.661 -2.264 -2.232 D 67 65 3 68 3 0 11 72 92 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 15 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 10 - G - - - ML 69 68 3 71 3 1 15 72 93 -8.107 -0.019 -6.761 -1.377 -2.430 1.631 -1.587 D 70 68 3 71 3 0 10 71 91 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 14 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 11 - G - - - ML 72 71 3 74 3 1 14 71 92 -3.999 -0.107 -6.761 -1.883 -3.147 1.784 -2.535 D 73 71 3 74 3 0 9 69 90 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 13 72 93 -1.645 -0.664 -4.345 0.000 0.000 0.000 0.000 [ MATL 21 ] 14 - A - - - ML 75 74 3 77 3 1 13 70 90 -8.107 -0.112 -3.816 1.377 -1.223 -1.409 -0.740 D 76 74 3 77 3 0 9 69 89 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 13 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 15 - A - - - ML 78 77 3 80 3 1 14 69 89 -8.015 -0.020 -6.669 1.532 -1.490 -1.575 -1.267 D 79 77 3 80 3 0 8 68 88 -6.880 -1.273 -0.792 IL 80 80 3 80 3 1 12 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 16 - A - - - ML 81 80 3 83 3 1 13 68 88 -8.069 -0.019 -6.723 1.516 -1.883 -1.026 -1.404 D 82 80 3 83 3 0 7 66 87 -6.515 -2.028 -0.427 IL 83 83 3 83 3 1 12 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 17 - A - - - ML 84 83 3 86 3 1 13 67 87 -8.069 -0.019 -6.723 1.199 -0.792 -1.236 -0.510 D 85 83 3 86 3 0 6 65 86 -6.515 -2.028 -0.427 IL 86 86 3 86 3 1 11 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 18 - c - - - ML 87 86 3 89 3 1 12 66 86 -8.069 -0.019 -6.723 -0.248 0.431 -0.598 0.201 D 88 86 3 89 3 0 6 64 84 -6.515 -2.028 -0.427 IL 89 89 3 89 3 1 11 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - A - - - ML 90 89 3 92 3 1 11 65 85 -8.069 -0.019 -6.723 1.131 -1.152 -0.922 -0.266 D 91 89 3 92 3 0 5 63 83 -6.515 -2.028 -0.427 IL 92 92 3 92 3 1 10 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 20 - u - - - ML 93 92 3 95 3 1 11 64 84 -8.069 -0.019 -6.723 -0.582 -0.146 -1.079 0.967 D 94 92 3 95 3 0 5 62 82 -6.515 -2.028 -0.427 IL 95 95 3 95 3 1 9 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 21 - c - - - ML 96 95 3 98 3 1 10 63 83 -1.849 -0.488 -6.723 -0.192 0.496 -0.682 0.125 D 97 95 3 98 3 0 4 60 80 -6.515 -2.028 -0.427 IL 98 98 3 98 3 1 9 63 83 -2.193 -0.419 -4.893 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - g - - - ML 99 98 3 101 3 1 9 61 81 -8.069 -0.019 -6.723 0.161 -0.923 0.531 -0.136 D 100 98 3 101 3 0 4 60 80 -6.515 -1.134 -0.906 IL 101 101 3 101 3 1 8 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - A - - - ML 102 101 3 104 3 1 9 60 80 -5.154 -0.055 -6.761 1.025 -0.784 -0.653 -0.417 D 103 101 3 104 3 0 3 58 78 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 7 61 82 -1.530 -0.736 -4.230 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - A - - - ML 105 104 3 107 3 1 8 59 79 -4.205 -0.095 -6.761 1.605 -1.953 -1.793 -1.284 D 106 104 3 107 3 0 2 57 77 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 7 60 80 -1.618 -0.680 -4.318 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - C - - - ML 108 107 3 110 3 1 7 58 77 -8.107 -0.019 -6.761 -2.091 1.706 -2.922 -1.434 D 109 107 3 110 3 0 1 56 76 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 6 59 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - A - - - ML 111 110 3 113 3 1 7 57 76 -8.107 -0.019 -6.761 1.774 -2.661 -2.264 -2.232 D 112 110 3 113 3 0 1 55 75 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 5 58 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - G - - - ML 114 113 3 116 3 1 6 56 75 -8.107 -0.019 -6.761 -1.143 -2.104 1.519 -1.155 D 115 113 3 116 3 0 0 54 74 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 5 57 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - U - - - ML 117 116 3 119 3 1 6 55 74 -8.107 -0.019 -6.761 -0.687 -1.152 -1.703 1.391 D 118 116 3 119 3 0 0 53 73 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 4 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - C - - - ML 120 119 3 122 3 1 5 53 73 -8.107 -0.019 -6.761 -2.091 1.706 -2.922 -1.434 D 121 119 3 122 3 0 0 52 72 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 3 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - U - - - ML 123 122 3 125 3 1 4 52 72 -5.262 -0.052 -6.761 -1.754 -1.704 -2.500 1.687 D 124 122 3 125 3 0 0 51 70 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 3 54 74 -1.522 -0.741 -4.223 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - G - - - ML 126 125 3 128 3 1 3 51 71 -8.107 -0.019 -6.761 -0.849 -2.044 1.479 -1.269 D 127 125 3 128 3 0 0 50 70 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - A - - - ML 129 128 3 131 3 1 3 50 70 -8.107 -0.019 -6.761 1.774 -2.661 -2.264 -2.232 D 130 128 3 131 3 0 0 49 68 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 2 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - U - - - ML 132 131 3 134 3 1 2 49 69 -4.087 -0.132 -5.117 -0.617 -0.277 -1.481 1.114 D 133 131 3 134 3 0 0 47 67 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 50 70 -1.633 -0.671 -4.333 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - u - - - ML 135 134 3 137 3 1 2 48 67 -8.078 -0.019 -6.732 -0.051 -0.679 -0.977 0.927 D 136 134 3 137 3 0 0 46 66 -6.437 -1.233 -0.829 IL 137 137 3 137 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - g - - - ML 138 137 3 140 3 1 2 47 66 -8.107 -0.019 -6.761 0.102 -1.139 0.673 -0.188 D 139 137 3 140 3 0 0 45 65 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 41 - U - - - ML 141 140 3 143 3 1 2 46 65 -4.226 -0.093 -6.761 -0.759 -0.556 -1.599 1.262 D 142 140 3 143 3 0 0 44 63 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 47 66 -1.615 -0.682 -4.315 0.000 0.000 0.000 0.000 [ MATL 44 ] 43 - C - - - ML 144 143 3 146 3 1 1 44 64 -8.107 -0.019 -6.761 -1.622 1.540 -2.459 -0.771 D 145 143 3 146 3 0 0 43 62 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 44 - a - - - ML 147 146 3 149 3 1 1 43 63 -8.107 -0.019 -6.761 0.868 -0.847 -0.641 -0.032 D 148 146 3 149 3 0 0 42 61 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 45 - c - - - ML 150 149 3 152 3 1 1 42 61 -8.107 -0.019 -6.761 -0.639 0.835 -1.107 0.151 D 151 149 3 152 3 0 0 41 60 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 46 - U - - - ML 153 152 3 155 3 1 1 41 60 -8.107 -0.019 -6.761 -1.754 -1.704 -2.500 1.687 D 154 152 3 155 3 0 0 40 59 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 47 - G - - - ML 156 155 3 158 3 1 1 40 59 -8.107 -0.019 -6.761 -1.883 -3.147 1.784 -2.535 D 157 155 3 158 3 0 0 39 58 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 48 - A - - - ML 159 158 3 161 3 1 1 39 58 -4.941 -0.062 -6.761 1.528 -1.926 -1.038 -1.453 D 160 158 3 161 3 0 0 37 57 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 40 60 -1.545 -0.726 -4.245 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - A - - - ML 162 161 3 164 3 1 1 38 57 -8.107 -0.019 -6.761 1.496 -1.463 -1.562 -1.065 D 163 161 3 164 3 0 0 36 56 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - G - - - ML 165 164 3 167 3 1 1 36 56 -8.107 -0.019 -6.761 -1.883 -3.147 1.784 -2.535 D 166 164 3 167 3 0 0 35 55 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - A - - - ML 168 167 3 170 3 1 1 35 55 -8.107 -0.019 -6.761 1.774 -2.661 -2.264 -2.232 D 169 167 3 170 3 0 0 34 53 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - C - - - ML 171 170 3 173 3 1 1 34 53 -8.107 -0.019 -6.761 -2.091 1.706 -2.922 -1.434 D 172 170 3 173 3 0 0 33 52 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - U - - - ML 174 173 3 176 3 1 1 33 52 -8.107 -0.019 -6.761 -1.754 -1.704 -2.500 1.687 D 175 173 3 176 3 0 0 32 51 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - G - - - ML 177 176 3 179 3 1 1 32 51 -8.107 -0.181 -3.130 -1.154 -1.898 1.564 -1.622 D 178 176 3 179 3 0 0 31 50 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - A - - - ML 180 179 3 182 3 1 1 31 50 -7.947 -0.021 -6.601 1.170 -1.447 -0.240 -0.898 D 181 179 3 182 3 0 0 30 49 -7.225 -0.584 -1.617 IL 182 182 3 182 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - U - - - ML 183 182 3 185 3 1 1 30 49 -8.107 -0.019 -6.761 -1.754 -1.704 -2.500 1.687 D 184 182 3 185 3 0 0 29 48 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - A - - - ML 186 185 3 188 3 1 1 29 48 -8.107 -0.019 -6.761 1.150 -0.831 -1.216 -0.344 D 187 185 3 188 3 0 0 28 47 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - A - - - ML 189 188 3 191 3 1 1 28 47 -8.107 -0.019 -6.761 1.774 -2.661 -2.264 -2.232 D 190 188 3 191 3 0 0 27 46 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - G - - - ML 192 191 3 194 3 1 1 27 46 -8.107 -0.019 -6.761 -1.883 -3.147 1.784 -2.535 D 193 191 3 194 3 0 0 26 45 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - A - - - ML 195 194 3 197 3 1 1 26 45 -8.107 -0.019 -6.761 1.774 -2.661 -2.264 -2.232 D 196 194 3 197 3 0 0 25 44 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - U - - - ML 198 197 3 200 3 1 1 24 43 -8.107 -0.019 -6.761 -1.754 -1.704 -2.500 1.687 D 199 197 3 200 3 0 0 23 42 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - C - - - ML 201 200 3 203 3 1 1 23 42 -8.107 -0.019 -6.761 -2.091 1.706 -2.922 -1.434 D 202 200 3 203 3 0 0 22 41 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 64 - C - - - ML 204 203 3 206 3 1 1 22 41 -8.107 -0.019 -6.761 -2.091 1.706 -2.922 -1.434 D 205 203 3 206 3 0 0 21 40 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 65 - A - - - ML 207 206 3 209 3 1 1 21 40 -8.107 -0.019 -6.761 1.774 -2.661 -2.264 -2.232 D 208 206 3 209 3 0 0 20 39 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 66 - A - - - ML 210 209 3 212 3 1 1 20 39 -8.107 -0.019 -6.761 1.774 -2.661 -2.264 -2.232 D 211 209 3 212 3 0 0 19 38 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 67 - C - - - ML 213 212 3 215 3 1 1 19 37 -8.107 -0.019 -6.761 -2.091 1.706 -2.922 -1.434 D 214 212 3 215 3 0 0 18 37 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 68 - U - - - ML 216 215 3 218 3 1 1 17 36 -8.107 -0.019 -6.761 -1.754 -1.704 -2.500 1.687 D 217 215 3 218 3 0 0 17 36 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 69 - C - - - ML 219 218 3 221 3 1 1 16 35 -8.107 -0.019 -6.761 -2.091 1.706 -2.922 -1.434 D 220 218 3 221 3 0 0 16 34 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 70 - U - - - ML 222 221 3 224 3 1 1 15 33 -8.107 -0.019 -6.761 -1.754 -1.704 -2.500 1.687 D 223 221 3 224 3 0 0 15 33 -6.174 -1.687 -0.566 IL 224 224 3 224 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 71 - G - - - ML 225 224 3 227 3 1 1 13 31 -8.107 -0.019 -6.761 -1.883 -3.147 1.784 -2.535 D 226 224 3 227 3 0 0 13 32 -6.174 -1.687 -0.566 IL 227 227 3 227 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 72 - A - - - ML 228 227 3 230 2 1 1 1 1 * 0.000 1.774 -2.661 -2.264 -2.232 D 229 227 3 230 2 0 0 0 0 * 0.000 IL 230 230 3 230 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 73 ] - - - - - - E 231 230 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SNORD19 ACC RF00569 DESC Small nucleolar RNA SNORD19 LENG 76 MAXL 160 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:48:33 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 22 EFFN 2.527100 CKSUM 2219234072 STATS LOCAL MSV -8.9739 0.71865 STATS LOCAL VITERBI -9.3770 0.71865 STATS LOCAL FORWARD -3.5266 0.71865 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.13913 1.53546 1.49333 1.42744 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 0.00000 * 1 2.06019 2.29741 0.39888 2.29285 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 2 0.30755 2.87976 1.90920 2.80671 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 3 1.97629 2.30548 0.43772 2.15244 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 4 2.06013 2.27266 0.38594 2.41111 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 5 1.66102 1.92831 2.14659 0.60188 5 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 6 0.26769 2.86873 2.29486 2.55993 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 7 2.69271 2.64266 3.21333 0.19734 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 8 2.79022 3.68012 0.13376 3.25530 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 9 0.14090 3.32721 3.04274 3.04019 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 10 2.41477 3.15113 0.23627 2.54797 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 11 2.79022 3.68012 0.13376 3.25530 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.10561 2.49518 4.03155 0.38584 1.13907 1.09861 0.40547 12 0.41489 2.25927 2.40650 1.93083 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.10913 4.03155 2.45762 1.46634 0.26236 1.09861 0.40547 13 0.30547 2.45528 2.53133 2.32451 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03882 3.96124 3.96124 1.46634 0.26236 0.75423 0.63558 14 0.31796 2.74923 2.12105 2.42488 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03723 4.00247 4.00247 1.46634 0.26236 1.52931 0.24422 15 0.53776 1.94697 2.27984 1.76646 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03723 4.00247 4.00247 1.46634 0.26236 1.52931 0.24422 16 1.57422 1.07138 1.80433 1.25278 18 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03723 4.00247 4.00247 1.46634 0.26236 1.52931 0.24422 17 0.58712 2.21188 2.04571 1.58333 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03723 4.00247 4.00247 1.46634 0.26236 1.52931 0.24422 18 1.81950 1.48599 2.15452 0.70187 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03723 4.00247 4.00247 1.46634 0.26236 1.52931 0.24422 19 1.53301 1.02498 1.86596 1.30725 21 c - - _ 1.38629 1.38629 1.38629 1.38629 0.41271 1.13983 4.00247 0.11056 2.25694 1.52931 0.24422 20 1.28133 2.04389 1.00004 1.49190 23 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03723 4.00247 4.00247 1.46634 0.26236 0.56805 0.83617 21 0.66193 1.94035 1.85098 1.69605 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06440 3.10948 4.03155 0.66570 0.72137 1.09861 0.40547 22 0.25631 2.79941 2.69066 2.32875 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.09550 2.61276 4.03155 0.42911 1.05294 1.09861 0.40547 23 2.95298 0.18113 3.52923 2.47503 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 24 0.14090 3.32721 3.04274 3.04019 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 25 2.24270 2.91373 0.31145 2.23331 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 26 1.89790 2.23070 2.62217 0.40045 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 27 2.95298 0.18113 3.52923 2.47503 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 28 2.69271 2.64266 3.21333 0.19734 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06203 3.16074 4.03155 0.69595 0.69036 1.09861 0.40547 29 2.01805 2.86113 0.34102 2.31430 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 30 0.14090 3.32721 3.04274 3.04019 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 31 1.84402 1.58199 2.45197 0.59760 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.12522 2.54577 3.23702 0.40394 1.10168 1.09861 0.40547 32 1.42807 1.87357 2.07933 0.73056 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03695 4.00978 4.00978 1.46634 0.26236 0.64374 0.74512 33 1.32318 2.20279 0.90061 1.52832 40 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 34 1.95027 1.78733 2.54013 0.49184 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.09455 2.62458 4.03155 0.43370 1.04443 1.09861 0.40547 35 2.59742 0.29454 3.18116 1.97240 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 36 0.77354 1.98881 1.84031 1.41471 44 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 37 1.86396 0.78467 2.17575 1.29044 45 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 38 2.69271 2.64266 3.21333 0.19734 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 39 2.79022 3.68012 0.13376 3.25530 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 40 0.30971 2.78076 2.12894 2.46058 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06963 3.00557 4.03155 0.60807 0.78614 1.09861 0.40547 41 0.33239 2.43208 2.51871 2.16826 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 42 2.79022 3.68012 0.13376 3.25530 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 43 0.14090 3.32721 3.04274 3.04019 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 44 2.95298 0.18113 3.52923 2.47503 53 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 45 2.69271 2.64266 3.21333 0.19734 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 46 2.25255 2.74942 0.28017 2.58695 55 G - - _ 1.38629 1.38629 1.38629 1.38629 0.16356 4.03155 2.01638 1.46634 0.26236 1.09861 0.40547 47 0.55915 2.42965 1.55200 2.05251 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04095 3.90894 3.90894 1.46634 0.26236 0.23633 1.55836 48 2.69271 2.64266 3.21333 0.19734 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 49 0.57218 1.97643 2.26393 1.64403 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 50 0.14090 3.32721 3.04274 3.04019 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 51 2.79022 3.68012 0.13376 3.25530 60 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 52 0.14090 3.32721 3.04274 3.04019 61 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 53 2.69271 2.64266 3.21333 0.19734 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 54 2.95298 0.18113 3.52923 2.47503 63 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 55 2.95298 0.18113 3.52923 2.47503 64 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 56 0.14090 3.32721 3.04274 3.04019 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 57 0.14090 3.32721 3.04274 3.04019 66 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 58 2.95298 0.18113 3.52923 2.47503 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 59 2.69271 2.64266 3.21333 0.19734 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 60 2.95298 0.18113 3.52923 2.47503 69 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 61 2.69271 2.64266 3.21333 0.19734 70 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 62 2.79022 3.68012 0.13376 3.25530 71 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 63 0.14090 3.32721 3.04274 3.04019 72 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 64 2.65354 0.46582 2.12814 1.69871 73 C - - > 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 65 2.50753 0.45964 2.22073 1.72323 74 C - - > 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 66 3.03943 2.21448 2.69363 0.25452 75 U - - > 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 67 2.41061 0.44462 2.24719 1.81110 76 C - - > 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 68 0.14090 3.32721 3.04274 3.04019 77 A - - : 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 69 1.36478 2.11625 0.73811 1.92373 78 g - - : 1.38629 1.38629 1.38629 1.38629 0.05664 4.03155 3.28821 1.46634 0.26236 1.09861 0.40547 70 1.44026 0.95446 2.29156 1.28372 79 c - - : 1.38629 1.38629 1.38629 1.38629 0.03687 4.01178 4.01178 1.46634 0.26236 1.41171 0.27935 71 0.71094 1.91725 1.76745 1.65528 80 a - - : 1.38629 1.38629 1.38629 1.38629 0.03687 4.01178 4.01178 1.46634 0.26236 1.41171 0.27935 72 0.95213 1.93086 1.54860 1.36057 81 a - - : 1.38629 1.38629 1.38629 1.38629 0.03687 4.01178 4.01178 1.46634 0.26236 0.66836 0.71856 73 0.64683 2.02502 2.03648 1.54263 82 A - - : 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 74 1.23935 2.07672 0.84151 1.87063 83 g - - : 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 75 1.93193 0.65377 2.09716 1.55000 84 C - - : 1.38629 1.38629 1.38629 1.38629 0.03614 4.03155 4.03155 1.46634 0.26236 1.09861 0.40547 76 2.27754 0.47969 2.86346 1.50770 85 C - - : 1.38629 1.38629 1.38629 1.38629 0.01823 4.01364 * 1.46634 0.26236 0.00000 * //