INFERNAL1/a [1.1.5 | Sep 2023] NAME SNORD19 ACC RF00569 DESC Small nucleolar RNA SNORD19 STATES 232 NODES 74 CLEN 76 W 95 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 15:18:36 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00569/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 22 EFFN 2.333740 CKSUM 2219234072 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.90 EFP7GF -8.9275 0.71867 ECMLC 0.65375 -5.82153 2.93234 1600000 366919 0.003270 ECMGC 0.39308 -17.15931 -3.57095 1600000 83511 0.004790 ECMLI 0.58195 -3.66600 4.95096 1600000 180716 0.006640 ECMGI 0.42521 -11.34155 0.37407 1600000 58284 0.006863 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 95 115 -7.009 -8.254 -0.073 -4.708 IL 1 1 2 1 4 1 30 96 117 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 31 96 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 85 - C - - MR 3 2 3 5 3 1 31 95 115 -8.492 -0.017 -6.809 -1.202 1.274 -2.039 -0.147 D 4 2 3 5 3 0 26 93 114 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 30 95 116 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 84 - c - - MR 6 5 3 8 3 1 30 94 114 -8.492 -0.017 -6.809 -0.695 0.980 -0.948 -0.165 D 7 5 3 8 3 0 25 92 113 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 30 94 115 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 83 - g - - MR 9 8 3 11 3 1 30 93 113 -8.492 -0.017 -6.809 0.227 -1.011 0.770 -0.672 D 10 8 3 11 3 0 24 91 112 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 29 93 114 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 82 - A - - MR 12 11 3 14 3 1 29 92 112 -8.492 -0.044 -5.193 1.042 -0.882 -0.887 -0.221 D 13 11 3 14 3 0 23 90 110 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 28 92 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 81 - a - - MR 15 14 3 17 3 1 28 91 111 -8.465 -0.017 -6.783 0.613 -0.757 -0.219 0.028 D 16 14 3 17 3 0 22 89 109 -6.615 -1.793 -0.512 IR 17 17 3 17 3 1 27 91 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 80 - a - - MR 18 17 3 20 3 1 28 90 110 -8.465 -0.017 -6.783 0.980 -0.771 -0.550 -0.399 D 19 17 3 20 3 0 21 88 108 -6.615 -1.793 -0.512 IR 20 20 3 20 3 1 27 90 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 79 - c - - MR 21 20 3 23 3 1 27 89 109 -8.465 -0.017 -6.783 -0.071 0.597 -1.264 0.162 D 22 20 3 23 3 0 21 87 108 -6.615 -1.207 -0.845 IR 23 23 3 23 3 1 26 89 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 78 - g - - MR 24 23 3 26 3 1 26 88 108 -8.492 -0.017 -6.809 0.034 -1.074 0.932 -0.753 D 25 23 3 26 3 0 19 86 107 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 25 88 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 77 - A - - MR 27 26 3 29 5 1 26 87 107 -7.222 -0.036 -7.037 -7.249 -8.141 1.776 -2.668 -2.271 -2.240 D 28 26 3 29 5 0 19 85 106 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 23 87 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 1 76 G C - - MP 30 29 3 34 6 2 26 86 106 -9.169 -9.109 -0.020 -7.885 -8.165 -8.560 -3.343 -2.547 -3.402 0.793 -3.685 -1.855 0.365 -3.827 -2.015 3.236 -3.874 -0.451 0.106 -3.311 -1.445 -2.492 ML 31 29 3 34 6 1 20 84 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 20 84 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 15 82 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 22 85 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 22 85 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 2 75 A U - - MP 36 35 6 40 6 2 24 84 104 -9.169 -9.109 -0.020 -7.885 -8.165 -8.560 -4.062 -3.026 -4.058 3.482 -4.534 -5.626 -0.216 -4.081 -3.941 0.786 -4.502 -0.461 -0.632 -4.766 -2.156 -2.877 ML 37 35 6 40 6 1 20 82 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 19 82 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 15 80 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 21 83 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 21 83 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 3 74 G C - - MP 42 41 6 46 6 2 22 82 102 -9.169 -9.109 -0.020 -7.885 -8.165 -8.560 -3.401 -2.501 -3.419 0.904 -3.825 -2.485 0.351 -3.891 -3.546 3.222 -3.929 -0.345 0.092 -1.719 -1.493 -2.487 ML 43 41 6 46 6 1 19 81 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 17 80 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 15 79 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 20 81 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 20 81 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 4 73 G C - - MP 48 47 6 52 4 2 20 80 100 -7.105 -7.312 -0.048 -5.726 -3.925 -2.701 -3.894 0.809 -4.363 -4.359 0.559 -4.287 -3.936 3.286 -4.291 0.035 -0.095 -3.776 -1.776 -2.830 ML 49 47 6 52 4 1 18 80 101 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 4 1 16 79 100 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 51 47 6 52 4 0 14 78 99 -4.568 -4.250 -2.265 -0.520 IL 52 52 5 52 4 1 19 81 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 53 53 6 53 3 1 19 80 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 5 - U - - - ML 54 53 6 56 3 1 19 77 98 -8.110 -0.019 -6.765 -0.335 -0.724 -1.021 1.077 D 55 53 6 56 3 0 14 76 96 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 18 79 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 6 - A - - - ML 57 56 3 59 3 1 18 76 97 -8.110 -0.019 -6.765 1.575 -2.017 -1.204 -1.556 D 58 56 3 59 3 0 13 75 95 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 17 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 7 - U - - - ML 60 59 3 62 3 1 17 75 96 -8.110 -0.019 -6.765 -1.761 -1.709 -2.507 1.688 D 61 59 3 62 3 0 12 74 94 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 16 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 8 - G - - - ML 63 62 3 65 3 1 16 74 95 -8.110 -0.019 -6.765 -1.891 -3.156 1.785 -2.544 D 64 62 3 65 3 0 11 73 93 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 16 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 9 - A - - - ML 66 65 3 68 3 1 16 73 94 -8.110 -0.019 -6.765 1.776 -2.668 -2.271 -2.240 D 67 65 3 68 3 0 11 72 92 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 15 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 10 - G - - - ML 69 68 3 71 3 1 15 72 93 -8.110 -0.019 -6.765 -1.348 -2.387 1.618 -1.526 D 70 68 3 71 3 0 10 71 91 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 14 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 11 - G - - - ML 72 71 3 74 3 1 14 71 92 -4.181 -0.096 -6.765 -1.891 -3.156 1.785 -2.544 D 73 71 3 74 3 0 9 69 90 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 13 72 92 -1.621 -0.678 -4.321 0.000 0.000 0.000 0.000 [ MATL 21 ] 14 - A - - - ML 75 74 3 77 3 1 13 70 90 -8.110 -0.122 -3.690 1.346 -1.161 -1.378 -0.674 D 76 74 3 77 3 0 8 68 89 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 13 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 15 - A - - - ML 78 77 3 80 3 1 14 69 89 -8.008 -0.020 -6.662 1.511 -1.420 -1.538 -1.211 D 79 77 3 80 3 0 8 67 88 -6.939 -1.250 -0.808 IL 80 80 3 80 3 1 12 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 16 - A - - - ML 81 80 3 83 3 1 13 68 88 -8.068 -0.019 -6.722 1.494 -1.847 -0.955 -1.363 D 82 80 3 83 3 0 7 66 86 -6.547 -2.060 -0.416 IL 83 83 3 83 3 1 12 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 17 - A - - - ML 84 83 3 86 3 1 13 67 87 -8.068 -0.019 -6.722 1.216 -0.808 -1.249 -0.545 D 85 83 3 86 3 0 6 65 85 -6.547 -2.060 -0.416 IL 86 86 3 86 3 1 11 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 18 - c - - - ML 87 86 3 89 3 1 12 66 86 -8.068 -0.019 -6.722 -0.261 0.427 -0.583 0.206 D 88 86 3 89 3 0 6 64 84 -6.547 -2.060 -0.416 IL 89 89 3 89 3 1 11 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - A - - - ML 90 89 3 92 3 1 11 65 85 -8.068 -0.019 -6.722 1.136 -1.160 -0.899 -0.289 D 91 89 3 92 3 0 5 63 83 -6.547 -2.060 -0.416 IL 92 92 3 92 3 1 10 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 20 - u - - - ML 93 92 3 95 3 1 11 64 84 -8.068 -0.019 -6.722 -0.578 -0.188 -1.049 0.977 D 94 92 3 95 3 0 5 62 82 -6.547 -2.060 -0.416 IL 95 95 3 95 3 1 9 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 21 - c - - - ML 96 95 3 98 3 1 10 63 83 -1.821 -0.499 -6.722 -0.209 0.509 -0.659 0.109 D 97 95 3 98 3 0 4 60 80 -6.547 -2.060 -0.416 IL 98 98 3 98 3 1 9 63 83 -2.205 -0.416 -4.905 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - g - - - ML 99 98 3 101 3 1 9 61 81 -8.068 -0.019 -6.722 0.164 -0.916 0.538 -0.156 D 100 98 3 101 3 0 4 60 80 -6.547 -1.097 -0.939 IL 101 101 3 101 3 1 8 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - A - - - ML 102 101 3 104 3 1 9 60 80 -5.394 -0.048 -6.765 1.041 -0.810 -0.680 -0.418 D 103 101 3 104 3 0 3 58 78 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 7 61 82 -1.515 -0.746 -4.215 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - A - - - ML 105 104 3 107 3 1 8 59 79 -4.435 -0.082 -6.765 1.607 -1.959 -1.798 -1.290 D 106 104 3 107 3 0 2 57 77 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 7 60 80 -1.592 -0.696 -4.292 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - C - - - ML 108 107 3 110 3 1 7 58 77 -8.110 -0.019 -6.765 -2.100 1.708 -2.931 -1.442 D 109 107 3 110 3 0 1 56 76 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 6 59 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - A - - - ML 111 110 3 113 3 1 7 56 76 -8.110 -0.019 -6.765 1.776 -2.668 -2.271 -2.240 D 112 110 3 113 3 0 1 55 75 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 5 58 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - G - - - ML 114 113 3 116 3 1 6 55 75 -8.110 -0.019 -6.765 -1.188 -2.164 1.542 -1.233 D 115 113 3 116 3 0 0 54 74 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 5 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - U - - - ML 117 116 3 119 3 1 6 54 74 -8.110 -0.019 -6.765 -0.734 -1.172 -1.734 1.408 D 118 116 3 119 3 0 0 53 73 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 4 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - C - - - ML 120 119 3 122 3 1 5 53 73 -8.110 -0.019 -6.765 -2.100 1.708 -2.931 -1.442 D 121 119 3 122 3 0 0 52 72 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 3 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - U - - - ML 123 122 3 125 3 1 4 52 72 -5.542 -0.045 -6.765 -1.761 -1.709 -2.507 1.688 D 124 122 3 125 3 0 0 51 70 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 3 54 74 -1.506 -0.752 -4.207 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - G - - - ML 126 125 3 128 3 1 3 51 71 -8.110 -0.019 -6.765 -0.789 -1.980 1.449 -1.194 D 127 125 3 128 3 0 0 50 69 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - A - - - ML 129 128 3 131 3 1 3 50 70 -8.110 -0.019 -6.765 1.776 -2.668 -2.271 -2.240 D 130 128 3 131 3 0 0 49 68 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 2 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - U - - - ML 132 131 3 134 3 1 2 49 69 -4.102 -0.134 -5.022 -0.621 -0.265 -1.484 1.111 D 133 131 3 134 3 0 0 47 67 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 50 70 -1.631 -0.672 -4.331 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - u - - - ML 135 134 3 137 3 1 2 48 67 -8.079 -0.019 -6.733 -0.029 -0.657 -0.942 0.899 D 136 134 3 137 3 0 0 46 66 -6.462 -1.200 -0.854 IL 137 137 3 137 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - g - - - ML 138 137 3 140 3 1 2 47 66 -8.110 -0.019 -6.765 0.098 -1.153 0.692 -0.210 D 139 137 3 140 3 0 0 45 65 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 41 - U - - - ML 141 140 3 143 3 1 2 46 65 -4.347 -0.087 -6.765 -0.739 -0.546 -1.587 1.253 D 142 140 3 143 3 0 0 44 63 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 47 66 -1.601 -0.690 -4.302 0.000 0.000 0.000 0.000 [ MATL 44 ] 43 - C - - - ML 144 143 3 146 3 1 1 44 64 -8.110 -0.019 -6.765 -1.666 1.558 -2.503 -0.829 D 145 143 3 146 3 0 0 43 62 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 44 - a - - - ML 147 146 3 149 3 1 1 43 63 -8.110 -0.019 -6.765 0.858 -0.830 -0.644 -0.021 D 148 146 3 149 3 0 0 42 61 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 45 - c - - - ML 150 149 3 152 3 1 1 42 61 -8.110 -0.019 -6.765 -0.626 0.819 -1.063 0.149 D 151 149 3 152 3 0 0 41 60 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 46 - U - - - ML 153 152 3 155 3 1 1 41 60 -8.110 -0.019 -6.765 -1.761 -1.709 -2.507 1.688 D 154 152 3 155 3 0 0 40 59 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 47 - G - - - ML 156 155 3 158 3 1 1 40 59 -8.110 -0.019 -6.765 -1.891 -3.156 1.785 -2.544 D 157 155 3 158 3 0 0 39 58 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 48 - A - - - ML 159 158 3 161 3 1 1 39 58 -5.290 -0.051 -6.765 1.551 -1.969 -1.114 -1.501 D 160 158 3 161 3 0 0 37 57 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 40 60 -1.521 -0.742 -4.221 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - A - - - ML 162 161 3 164 3 1 1 38 57 -8.110 -0.019 -6.765 1.474 -1.402 -1.532 -1.007 D 163 161 3 164 3 0 0 36 56 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - G - - - ML 165 164 3 167 3 1 1 36 56 -8.110 -0.019 -6.765 -1.891 -3.156 1.785 -2.544 D 166 164 3 167 3 0 0 35 55 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - A - - - ML 168 167 3 170 3 1 1 35 55 -8.110 -0.019 -6.765 1.776 -2.668 -2.271 -2.240 D 169 167 3 170 3 0 0 34 53 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - C - - - ML 171 170 3 173 3 1 1 34 53 -8.110 -0.019 -6.765 -2.100 1.708 -2.931 -1.442 D 172 170 3 173 3 0 0 33 52 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - U - - - ML 174 173 3 176 3 1 1 33 52 -8.110 -0.019 -6.765 -1.761 -1.709 -2.507 1.688 D 175 173 3 176 3 0 0 32 51 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - G - - - ML 177 176 3 179 3 1 1 32 51 -8.110 -0.173 -3.193 -1.123 -1.834 1.549 -1.579 D 178 176 3 179 3 0 0 31 50 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - A - - - ML 180 179 3 182 3 1 1 31 50 -7.958 -0.021 -6.612 1.202 -1.473 -0.296 -0.930 D 181 179 3 182 3 0 0 30 49 -7.192 -0.601 -1.583 IL 182 182 3 182 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - U - - - ML 183 182 3 185 3 1 1 30 49 -8.110 -0.019 -6.765 -1.761 -1.709 -2.507 1.688 D 184 182 3 185 3 0 0 29 48 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - A - - - ML 186 185 3 188 3 1 1 29 48 -8.110 -0.019 -6.765 1.143 -0.849 -1.213 -0.313 D 187 185 3 188 3 0 0 28 47 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - A - - - ML 189 188 3 191 3 1 1 28 47 -8.110 -0.019 -6.765 1.776 -2.668 -2.271 -2.240 D 190 188 3 191 3 0 0 27 46 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - G - - - ML 192 191 3 194 3 1 1 27 46 -8.110 -0.019 -6.765 -1.891 -3.156 1.785 -2.544 D 193 191 3 194 3 0 0 26 45 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - A - - - ML 195 194 3 197 3 1 1 26 45 -8.110 -0.019 -6.765 1.776 -2.668 -2.271 -2.240 D 196 194 3 197 3 0 0 25 44 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - U - - - ML 198 197 3 200 3 1 1 24 43 -8.110 -0.019 -6.765 -1.761 -1.709 -2.507 1.688 D 199 197 3 200 3 0 0 23 42 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - C - - - ML 201 200 3 203 3 1 1 23 42 -8.110 -0.019 -6.765 -2.100 1.708 -2.931 -1.442 D 202 200 3 203 3 0 0 22 41 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 64 - C - - - ML 204 203 3 206 3 1 1 22 41 -8.110 -0.019 -6.765 -2.100 1.708 -2.931 -1.442 D 205 203 3 206 3 0 0 21 40 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 65 - A - - - ML 207 206 3 209 3 1 1 21 40 -8.110 -0.019 -6.765 1.776 -2.668 -2.271 -2.240 D 208 206 3 209 3 0 0 20 39 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 66 - A - - - ML 210 209 3 212 3 1 1 20 39 -8.110 -0.019 -6.765 1.776 -2.668 -2.271 -2.240 D 211 209 3 212 3 0 0 19 38 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 67 - C - - - ML 213 212 3 215 3 1 1 19 37 -8.110 -0.019 -6.765 -2.100 1.708 -2.931 -1.442 D 214 212 3 215 3 0 0 18 37 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 68 - U - - - ML 216 215 3 218 3 1 1 17 36 -8.110 -0.019 -6.765 -1.761 -1.709 -2.507 1.688 D 217 215 3 218 3 0 0 17 36 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 69 - C - - - ML 219 218 3 221 3 1 1 16 35 -8.110 -0.019 -6.765 -2.100 1.708 -2.931 -1.442 D 220 218 3 221 3 0 0 16 34 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 70 - U - - - ML 222 221 3 224 3 1 1 15 33 -8.110 -0.019 -6.765 -1.761 -1.709 -2.507 1.688 D 223 221 3 224 3 0 0 15 33 -6.174 -1.687 -0.566 IL 224 224 3 224 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 71 - G - - - ML 225 224 3 227 3 1 1 13 31 -8.110 -0.019 -6.765 -1.891 -3.156 1.785 -2.544 D 226 224 3 227 3 0 0 13 32 -6.174 -1.687 -0.566 IL 227 227 3 227 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 72 - A - - - ML 228 227 3 230 2 1 1 1 1 * 0.000 1.776 -2.668 -2.271 -2.240 D 229 227 3 230 2 0 0 0 0 * 0.000 IL 230 230 3 230 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 73 ] - - - - - - E 231 230 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SNORD19 ACC RF00569 DESC Small nucleolar RNA SNORD19 LENG 76 MAXL 160 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 15:18:36 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00569/CM NSEQ 22 EFFN 2.532471 CKSUM 2219234072 STATS LOCAL MSV -9.1359 0.71867 STATS LOCAL VITERBI -9.3693 0.71867 STATS LOCAL FORWARD -3.5280 0.71867 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.13963 1.53540 1.49163 1.42841 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 0.00000 * 1 2.05419 2.27480 0.40541 2.28004 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 2 0.30663 2.88282 1.91141 2.80962 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 3 1.98547 2.34604 0.42852 2.15882 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 4 2.06550 2.30857 0.37699 2.43138 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 5 1.63539 1.90779 2.11153 0.62425 5 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 6 0.27830 2.84520 2.24963 2.53363 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 7 2.69505 2.64461 3.21576 0.19686 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 8 2.79274 3.68297 0.13337 3.25813 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 9 0.14052 3.32969 3.04498 3.04293 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 10 2.39061 3.11709 0.24564 2.50185 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 11 2.79274 3.68297 0.13337 3.25813 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.09647 2.60052 4.03250 0.42404 1.06246 1.09861 0.40547 12 0.43677 2.21392 2.38237 1.88207 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.11697 4.03250 2.37884 1.46634 0.26236 1.09861 0.40547 13 0.32081 2.40276 2.50245 2.28195 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03909 3.95462 3.95462 1.46634 0.26236 0.74165 0.64689 14 0.33348 2.72113 2.06835 2.39274 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00036 4.00036 1.46634 0.26236 1.56530 0.23449 15 0.52650 1.95791 2.28814 1.79143 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00036 4.00036 1.46634 0.26236 1.56530 0.23449 16 1.58296 1.07438 1.79384 1.24896 18 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00036 4.00036 1.46634 0.26236 1.56530 0.23449 17 0.58429 2.21684 2.02862 1.59934 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00036 4.00036 1.46634 0.26236 1.56530 0.23449 18 1.81498 1.51646 2.13144 0.69514 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00036 4.00036 1.46634 0.26236 1.56530 0.23449 19 1.54537 1.01667 1.84875 1.31851 21 c - - _ 1.38629 1.38629 1.38629 1.38629 0.42152 1.12195 4.00036 0.10889 2.27140 1.56530 0.23449 20 1.27905 2.03820 0.99541 1.50569 23 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03731 4.00036 4.00036 1.46634 0.26236 0.54137 0.87215 21 0.65109 1.95913 1.87074 1.69537 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05930 3.22280 4.03250 0.73367 0.65421 1.09861 0.40547 22 0.25551 2.80214 2.69310 2.33177 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.08577 2.74164 4.03250 0.48123 0.96240 1.09861 0.40547 23 2.95598 0.18059 3.53222 2.47746 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 24 0.14052 3.32969 3.04498 3.04293 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 25 2.27362 2.95577 0.29630 2.28809 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 26 1.93099 2.24359 2.64304 0.38894 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 27 2.95598 0.18059 3.53222 2.47746 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 28 2.69505 2.64461 3.21576 0.19686 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05661 3.28846 4.03250 0.77630 0.61638 1.09861 0.40547 29 1.97314 2.81252 0.36190 2.25783 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 30 0.14052 3.32969 3.04498 3.04293 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 31 1.84633 1.57304 2.45281 0.60017 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.12673 2.55594 3.18422 0.40732 1.09491 1.09861 0.40547 32 1.41196 1.85652 2.05331 0.75118 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03700 4.00854 4.00854 1.46634 0.26236 0.61859 0.77372 33 1.32657 2.21214 0.88777 1.54376 40 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 34 1.93414 1.77940 2.53025 0.49911 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08927 2.69315 4.03250 0.46083 0.99632 1.09861 0.40547 35 2.62790 0.28244 3.21104 2.01358 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 36 0.78084 1.97576 1.84234 1.40699 44 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 37 1.85286 0.79632 2.14329 1.29115 45 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 38 2.69505 2.64461 3.21576 0.19686 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 39 2.79274 3.68297 0.13337 3.25813 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 40 0.29502 2.80991 2.18321 2.49379 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06137 3.17490 4.03250 0.70394 0.68247 1.09861 0.40547 41 0.34800 2.38714 2.49513 2.12425 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 42 2.79274 3.68297 0.13337 3.25813 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 43 0.14052 3.32969 3.04498 3.04293 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 44 2.95598 0.18059 3.53222 2.47746 53 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 45 2.69505 2.64461 3.21576 0.19686 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 46 2.22811 2.70109 0.29123 2.55375 55 G - - _ 1.38629 1.38629 1.38629 1.38629 0.15699 4.03250 2.05920 1.46634 0.26236 1.09861 0.40547 47 0.53733 2.44795 1.59167 2.07435 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91616 3.91616 1.46634 0.26236 0.24529 1.52545 48 2.69505 2.64461 3.21576 0.19686 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 49 0.57791 1.98952 2.25998 1.62041 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 50 0.14052 3.32969 3.04498 3.04293 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 51 2.79274 3.68297 0.13337 3.25813 60 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 52 0.14052 3.32969 3.04498 3.04293 61 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 53 2.69505 2.64461 3.21576 0.19686 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 54 2.95598 0.18059 3.53222 2.47746 63 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 55 2.95598 0.18059 3.53222 2.47746 64 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 56 0.14052 3.32969 3.04498 3.04293 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 57 0.14052 3.32969 3.04498 3.04293 66 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 58 2.95598 0.18059 3.53222 2.47746 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 59 2.69505 2.64461 3.21576 0.19686 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 60 2.95598 0.18059 3.53222 2.47746 69 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 61 2.69505 2.64461 3.21576 0.19686 70 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 62 2.79274 3.68297 0.13337 3.25813 71 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 63 0.14052 3.32969 3.04498 3.04293 72 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 64 2.67364 0.45870 2.16208 1.69385 73 C - - > 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 65 2.52835 0.45160 2.23954 1.73107 74 C - - > 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 66 3.04233 2.21699 2.69669 0.25372 75 U - - > 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 67 2.39967 0.44945 2.23528 1.80598 76 C - - > 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 68 0.14052 3.32969 3.04498 3.04293 77 A - - : 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 69 1.37548 2.15023 0.71763 1.94551 78 g - - : 1.38629 1.38629 1.38629 1.38629 0.05863 4.03250 3.23869 1.46634 0.26236 1.09861 0.40547 70 1.44473 0.95311 2.29268 1.28138 79 c - - : 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.43789 0.27106 71 0.69406 1.93038 1.77587 1.68185 80 a - - : 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 1.43789 0.27106 72 0.95530 1.92211 1.53654 1.37089 81 a - - : 1.38629 1.38629 1.38629 1.38629 0.03691 4.01078 4.01078 1.46634 0.26236 0.64408 0.74475 73 0.65012 2.01295 2.02035 1.55204 82 A - - : 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 74 1.23540 2.10461 0.83103 1.88529 83 g - - : 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 75 1.90735 0.68174 2.06040 1.52148 84 C - - : 1.38629 1.38629 1.38629 1.38629 0.03610 4.03250 4.03250 1.46634 0.26236 1.09861 0.40547 76 2.27980 0.47854 2.86590 1.50926 85 C - - : 1.38629 1.38629 1.38629 1.38629 0.01821 4.01461 * 1.46634 0.26236 0.00000 * //