# STOCKHOLM 1.0
#=GF ID SNORA26
#=GF AC RF00568
#=GF DE Small nucleolar RNA SNORA26
#=GF AU Marantidis E
#=GF GA 40.0
#=GF NC 39.9
#=GF TC 40.0
#=GF PI snoHBI-6
#=GF SE Marantidis E, INFERNAL
#=GF SS Predicted; RNAalifold
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.30 -Z 2958934 CM SEQDB
#=GF CL CL00032
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Mus_musculus300924;
#=GF DR snoopy; Loxodonta_africana300063;
#=GF RN [1]
#=GF RM 11387227
#=GF RT RNomics: an experimental approach that identifies 201 candidates for
#=GF RT novel, small, non-messenger RNAs in mouse.
#=GF RA Huttenhofer A, Kiefmann M, Meier-Ewert S, O'Brien J, Lehrach H,
#=GF RA Bachellerie JP, Brosius J
#=GF RL EMBO J. 2001;20:2943-2953.
#=GF CC The snoRNA HBI-6 belong to the H/ACA family of snoRNAs, guiding the
#=GF CC pseudouridylation of position U4522 if the 28S rRNA. HBI-6 is the human
#=GF CC orthologue of mouse MBI-6 snoRNA.
#=GF WK Small_nucleolar_RNA_SNORA26
#=GF SQ 76

AC092814.2/136717-136838     AUGCCCUU--UU-AAGGUUG-AUGU----GG-UGCUUUAA-GAAGCUAACAU--------AGAAGGAUA-----AAGU-AAGUCUCUACAAAA--CCCAGAGA---------AGAGA-CU-GG-----AAAA-CUCC-UCUCUGG----------AUCCUGCC----UGGAGU-CACAGCU
AC104066.3/51055-51176       GUGCCCUU--UU-AAGGUUG-ACCC----AG-UGCUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGU-AAGUCUCCAUAAAA--CCCAGAGA---------AGAGA-CU-GG-----AAAG-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAACU
AL136367.10/60337-60471      GUGCCCUU--UU-AAGGUAG-ACGC----AG-UUUCGUAA-GAGGCUAACAC--------AUAAGGGUAAAUUAAAGU-AAGUCUCCAUAAAA--CCCAGAGAAGAGACAGAAGAGA-CU-GU-----GAAA-CUCC-UCUUUGG----------ACCCCAUC----UGGAGC-CACAGC-
AL121924.13/13903-13781      GUUCCCUU--UU-AAGGCUG-ACCC----AG-UGCUUUAA-GAGGCUGAUAC--------AGAAGGGUA-----AAGUUAAGUCUCCACAAAA--UCCAGGGA---------AGAGA-CU-GU-----GAAA-CUCA-UCUUAGA----------ACCUUGUA----UGGAGU-CACAGCU
AL050343.17/107475-107596    GUGCCCUU--UU-AAGGUUG-ACGC----AG-UGCUUUAA-GGGGCUAACAC--------AGAAGGGUA-----AAGG-AAGUCUCCAUAAAC--CCCAGAGA---------AGAGA-UU-GU-----AAAG-CUCC-UCUUUAG----------AACCUUUC----UGGAGU-CACACCU
AC104066.3/85942-86065       GUGCCCCU--UUUAAGGUUG-ACAC----AG-UGCAUUAA-G---------C--------AGAAGGGUU-----AAGU-AAGUCUCCAUAAAA--CCCAGAGA---------AGAGA-AU-GU-----AAAG-CUCC-UCUUUGGAGGAGCUAGACUCCUGUC----UGGAGU-CACAGCU
AC104843.3/81519-81640       GCACCCCU--UU-AAGGCUG-AUGC----AA-UGCUUUAA-GAGGCUAACAC--------AGAAGGGUG-----AAGC-CAGUCUCCUUAAAA--CCCAAAGA---------AGAGA-UU-GU-----AAAA-CUUC-UCUUUGG----------CUCCUGUC----UGGAGU-CACAGCU
AC003109.1/71088-70967       GCACCCCU--UU-AAGGCUG-AUGC----AA-UGCUUUAA-GAGGCUAACGC--------AGAAGGGUG-----AAGC-CAGUCUCCUUAAAA--CCCAAAGA---------AGAGA-UU-GU-----AAAA-CUUC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AL133229.40/63450-63329      GUGUCCUU--UU-AAGGUUG-ACAC----AG-UGCUUUAA-GAGCCUAACAC--------AGAAAGGUA-----AAGU-AAGUUUCCGUAAAA--CCCAGAAA---------UGAUA-UU-GC-----AAAA-UUCC-UCUUUGA----------AUCAUGUC----UGGAGU-CACAGCU
AC132607.4/131317-131438     GUGCCCUU--UU-AAGGUUG-ACAC----UG-UACUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGG-AACUCUCCAUCAAA--CCCAGAGA---------AGAGG-CU-CC-----ACAC-CUCC-UCUCUGG----------AUCCUGUC----UGGAGU-CACAGCU
AC157768.4/34378-34499       GUGCCCUU--UU-AAGGUUG-AUAC----UG-UACUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGG-AACUCUCCAUCAAA--CCCAGAGA---------AGAGG-CU-CC-----CCAC-UUCC-UCUCUGG----------AUCCUGUC----UGGAGU-CACAGCU
AC104794.4/72269-72155       GUGCC------U-AAGGUUA-ACAC----AG-CGCCUUAA-GAGGCUAACAC--------AGAAGGGCA-----AAGU-AAGUCUCCAUAAAA--CCCAGAGA---------AGA---CU-GU-----GAAC-C-CC-UCUCUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAFC03059112.1/4655-4776     GUGCCCUU--UU-AAGGUUG-ACAC----AG-UGCCUUAA-GAGGCUAACAC--------AGGAGGGUA-----AAGA-AAGUCUCCAUAAAA--CCCAGAGA---------AGAGA-UU-UU-----AGAA-CUCC-UCUCUGG----------AUCCUGUC----UGGAGU-CACAACU
AANG01294629.1/560-441       GUGCCCUU--UU-AAGGUUG-ACGC----AG-UGCCUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGU-AAGUCUCCAUAAAA--CCCAGGGA---------UGAGA-CU--------AAAA-CUCC-UCUCUGG----------AUCCUGUC----UGGAGU-CACAGCG
ABDC01192626.1/1120-1246     GUGCCCUU--UU-AAAGUUG-ACGC----AG-UGCUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGU-AAGUCUCCAUAAAA--CCCAGAGA---------AGAGA-UU-UUUUAAAAAAA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAPY01080840.1/831-711       GUGCCCUU--UU-AAGGCUG-CCGC----AG-UGCUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGU-AAGUCUCCAUAAAA--CCCAGAGA---------AGAGA--U-GA-----UCAA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAQQ01275709.1/3638-3517     GUGCCUUU--UU-AAGGUUG-ACGC----AG-UGCUUUAA-GAAGCUAACAC--------AGAAGGGUA-----AAGC-AAACCUCCAUAGAA--CCCAGAGA---------AGAGA-UU-GC-----AAAA-CUCU-UCUUUGG----------AUCCUGCC----UGGAGU-UACCAAU
AAIY01681363.1/743-865       GUGCCCUU--UU-AAGGUUG-CUGC----GG-UACUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGC-AAGUCUCCAUUAAA--CCCAGAGA---------UGAGG-UC-GG-----CAGAACUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAACU
AALT01155338.1/5220-5099     UUGCUCUU--UU-AAGGCUG-AUGC----AG-UGCUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGU-GAAUCUCCAUAAAA--CCCAGGGA---------GGAGA-UU-GU-----AAAA-CUUC-UCUCUGG----------AUCCUGUC----UGGAGC-CACAUCU
AANN01548915.1/871-998       GUGCCCUU--CUUAGGGUUG-AUGCUUUAAG-UGCUUUAA-GACGUUAACAU--------AGAAGGGUA-----AAGUUAAGUCUUCAUGAAA--CCCAGAGA---------AGAGA-UU-GU-----AAAA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGUA
AANU01167777.1/14247-14117   GUGCCCUU--UU-AAGGUAG-ACAC----AG-UUUUUUAA-GCGGCUAGCAC--------AGAAGGGUA-----AAGU-AAGUCUCCAUAAAA--CCCGGAGAACAGACAGAAGAGA-CU-GU-----GAAA-CUCC-UCUUUGG----------AUGCCAUC----UGGAGC-CAUAGCA
AAYZ01011551.1/5063-4943     AGGCCCCC--GU-GCAGCUG-AUGC----UG-UGCAGUGU-GAGGCCAACAC--------AGGAGGGCA-----GAGG-AACCCUCCAUGACA--CCCAGGGA---------AGAGC-CU-GC-----CCA--CUCC-UCUCUUG----------AGCCUGCC----UGGAGG-CACAGCU
AAFR03034824.1/101255-101375 UAGCCUGU--UA-AAGCUGC-AGUG----CU-UUAAGAGG-CUAACCCAGAA--------UGAAGGGUA-----UAAU-AAUUCUCCAUUAAA--CCCAAAUC---------AGAGA-UU--U-----AAAA-CUCU-UUUUUGG----------AUCCUGUC----UGGAGU-UACAGUU
AAVX01051330.1/2876-2757     UUGCCCAU--CU-AA-GAUG-AACC----A--UGUCUUAA-GUGGCCAACAC--------AAAAGGGUA-----GAGCAGAUUCUCUCUAAAA--CCCAAAGCAA-------AAGAU-CA----------UG-UCUAUGCUUUGG----------AUCCUGUC----GAGAGG-AACAAUG
AAPN01028125.1/2930-2813     GUGCUCCC--UU-AGAGCUG--CUU-----G-UGCUCUAA-GGGG-CAACAC--------AGGAGGGAA-----UAAC-AUUCCUCUCUUAAA--CCCAGAGC---------UGAGG-CU--A-----AAAA-CUCU-CCUCUGG----------AUCCUGUC----GGGAGG-CACACUG
AC115823.18/163775-163655    GUGCCCUU--UU-AAGGUUG-UCGC----AG-UACUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGG-AACUCUCCAUAAAA--CCCAGAGA---------GGAAA-AC--U-----ACAC-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAAAU
AANU01285329.1/14928-15047   AUGCCCUU--UU-AAGGUUG-AUGU----AG-UGCUUUAA-GAAGCUAACAU--------AGAAGGAUA-----AAAU-AAGUCUCUACAAAA--CCCAGAGA---------AGAUA-UU-GG-----AACA---CU-CCUCUGG----------AUCCUGCC----UGGAGU-CACAGCU
AALT01195919.1/538-416       GUACCCUU--CU-AAAAUUG-AUGC----AGUUGCUUUAC-AUUGACAAUGC--------AGAAAGGUA-----AAGU-AAGAAUCUAUAAAA--CCUAGAGA---------GGAGA-UU-GU-----AAAA-CUCC-UCUUUGG----------AUUCCGCC----UGGAGA-CAAACUG
AAIY01305850.1/2017-2139     GUGCCCCU--UU-AAGGUUG-CUGC----AG-UGCUUUAA-GAGGGGAACAC--------AGACUGGCA-----AGGC-ACCCCUCCAUAAAA--CCCAGAGA---------CGAGG-UC-UG-----UGGAACUCU-UCUUUGG----------AGCCCAUC----UGGAGU-CACAGCU
AANN01231112.1/4311-4196     AUGCCCUU--UU-AAGG-------C----UU-UAAUUUAA-GAAGUUAACAU--------AGAAGGGUA-----AAGU-AAGUUUUCAUAAAA--CCCAGUGG---------AGAGA-UU-GU-----GGAA-CUCU-UCUUUGG----------AUCCUGUC----UGGAGU-UACAGUU
AAIY01697128.1/2417-2295     GUGCCCUU--GU-AAGGUUG-UUGC----AG-UACUUUAA-GAGGUGAACAC--------AGAAAGGCA-----AAAC-GAGUUUCCAUAAAA--CCCAGAGA---------UGAGG-UC-AC-----CAUAACUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAACU
AANN01321984.1/2338-2458     UUGCCCUU--UU-AAAGUUA-AUGC----AA-UGGUUUGA-GAGGCUAACAC--------AGAAGGGCA-----AAAU-AAGUGUCUAUAAAA--CCCAGGGA---------AGAGG-UU-AU-----AAAA-AUU--UUCUUGG----------AUCCUAUC----UGGACC-CAAGAAA
AANN01560516.1/946-827       UUAUCCUUACCU-AAAG----ACUC----AC-UG-UUUAA-GAAGCUAACAC--------AGAAGGGUA-----AAGU-AAGUCUCCAUAAAA--CCCAGGGG---------AGAGA-UU-AC-----AGAA-CUCU-UCUUUGG----------AUCCUGUC----UGGAGU-UACAGUU
AANU01259296.1/637-755       GUGCCCUU--UU-AAGGUUG-ACAC----AG-UGCCUUAA-GAGCCUAACAC--------AGAAG---U-----AAGU-AAGUUUCCAUAAAA--CCCAGAGA---------CUAUA-UU-GC-----AAAA-UUCC-UCUUUGG----------AUCAUGUC----UGGAGU-UACAGCU
AAIY01135236.1/1354-1232     GUGCCCUU--UU-AAGGUUG-CUGC----AA-UACUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGC-AAGUCUCCAUAAAA--CCUAGAGA---------UGAGG-UUGGU-----ACAA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CAUAACU
AAHX01114487.1/3009-3129     GUGCCCUU--UU-AAGGUUG-UCAU----GG-CUCUUUAA-GAGGCUAACAC--------AAAAGGGUA-----AAGG-AAGUCUUCAUAAAA--CCCAGAGA---------GGAAA-AC--U-----GCAC-CUCC-UCUUUGG----------UUCCUGUC----UGGAGU-UACAGAU
AAFC03006239.1/27684-27803   GUGCCCUU--UU-AAGGUU---CGC----AG-UGCCUUAG-GAGGCUAACAC--------AGAAGGGUA-----AAGA-CAGUCUCCGUAAAA--UCCAGAGA---------AGAGA-CU-GU-----GGAA-CUCC-UCUUUGG----------AUCCUGGC----UGGAGU-CACAGCU
AAHX01101167.1/63554-63434   GUGCCCUU--UU-ACGGUUG-UCAU----GG-UACUUUAA-GAGGCUAACAC--------AAAAGGGUA-----AAAG-AACUCUCCAUAAAA--CCUAGAGA---------GGAAA-AC--U-----ACAC-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CAUCAAU
ABDC01035061.1/905-1025      GUGUCAUU--UU-AAAAUUG-UUGC----AG-UGCUUUAA-GAGGCUAAAAC--------AGAAGGGUA-----UAGU-AAU-CUUCAUAAAA--CCCAAAGA---------AGAGA-UU-UC-----AAAA-CUCC-UAUUUGG----------AUCCUGUC----UGGAGU-CACAGCG
AANN01590790.1/418-297       GUGCCCUU--UU-GAGGUUG-AUGC----AG-UUCUUAAA-AAGGCUAACAC--------AGAAGGGUA-----GAAU-UAGUCUUCAUAAAA--CCCAGAAA---------AGAGU-UU-AU-----AAAG-UUCC-UCUUUGU----------AUCCUGUC----UGGAAU-CACAGUU
AALT01630531.1/704-582       GUGCCCUC--CU-AAGACUG-UCUU----GG-UGCUUUCA-GAGACUCGUGU--------AAGAGGGUA-----AAAU-CAGGCUCUAUAAAA--CCCAGGGA---------GGAAA-CU-GU-----AAAAAUUCC-UCCUUGG----------AUUCUGUC----UGGAGU-CACAGCC
AANU01275726.1/973-851       GUUCCUUU--UU-AAGGCUG-GCCC----AG-UGCUCUAA-GAGGCUGAUAC--------AGAAGGAUA-----AAGUUAAGUCUCCACAAAA--CCCAGGGA---------AGAGA-CU-GU-----GAAA-CUCC-UCUUAGA----------ACCUUGUA----UGGAGU-CAUAGCC
AAPY01066966.1/3579-3699     GUGCCCUU--CU-AAGGCUG-CCGC----AG-UGCUUUAA-GAGUCUAACAU--------AGAAGGUUAA----AAGC-AAGACUCCAUAAAA--CUCAGAGA---------AGAGA-CU-GU-----AAAA-CUCC---UCUGG----------AACCUGUC----UGGAGU-CACAACU
AAPY01466542.1/454-574       UUUCCUGU--GC-CCUGGUG-ACGC----CA-UGCUUUUA-GAGGCUAACAC--------GGAAGGGUA-----AAAU-AAGUCUCCAUAAAA--UCCAGAGA---------AGAGA--U-GA-----UAAA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAACU
AANN01720545.1/1692-1813     GUGCUCUU--UU-AAGAUUG-ACUC----AG-CGCUUUAA-GAGGCUAACAC--------AGAAGGGAA-----AAGU-AAGUCUCCAUAAAA--GGCAAGGG---------AGAGA-CU-GC-----AAAA-CUCU-UCUUUGG----------AUCCUGUC----UGCAGU-CACAGUA
AALT01366975.1/3882-4000     GUACCUUG--UU-GGGCUUG-AUGC----AA-UGCUUUUA-GAGGCUAACAC--------AG-AGGGUA-----AAGU-AAGUCUCCAUAAAA--CCCAGAGA---------AGA---UU-GU-----AAAA-UUCU-UCUCUGG----------AUCCUGUC----UGGAGU-CAAAGUG
AAIY01537984.1/1758-1881     GUGCCCUU--UU-AAGGUUG-CUGC----AG-UACUUUAA-GAGGCUAACAC--------AGAA-GGUA-----AAGC-AAGUCUCCAUAAAAAACCCAAAGA---------CAAGA-UC-GG-----UAGAACUCC-UCUUUGG----------AUCCUAUC----UGGAGU-CACAAGU
AAHX01044405.1/16728-16849   GUGCCCUU--UU-AAGGUUG-GUAC----UG-UACCUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGG-AACUCUCCAUAAAA--CCCAGAGA---------AGAGG-CU-CC-----ACUC-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGUU
AAIY01364204.1/641-767       GUGCCCUU--UU-AAGGUUG-CUGC----GG-UACUUUAA-GAGGCUAACAC--------AGAAGGGUAAAUA-AAGC-ACGUCUCCAUAAAA--CCCAGAGA---------CGAGG-UC-GG-----CAGAACUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAPY01398231.1/628-744       GUGCCCU--------GGUUG-ACGC----CA-UGCUUUUA-GAGGCUAACAC--------GGAAGGGUA-----AAAU-AAGUCUCCAUAAAA--UCCAGAGA---------AGAGA--U-GA-----UAAA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGUCCACACCU
AAHX01111635.1/42213-42089   GUGCCCUU--UU-AAGGUUG-UUGC----AG-UACUUUAA-GAGGCUAACAC--------AGAAGGAUA-----AAGG-AAGUCUCCAUAAAA--CCCAGAGA---------GGAAA-AC--U-----GCAC-UUCC-UCUUUGG----------AUCCUGUCUGACUGGAGU-CACAGAU
AAHX01035522.1/62311-62430   GUGCCCUU--UU-AAGGUUG-UCGC----AG-UACUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGG-AAGUCUCCACAAAA--CCCAGAGA---------GGAAA-AC-UG-----CA---CUCC-UCUUUAG----------AUCCUGUC----UGGAGU-CACAGAU
AAWR02005238.1/34286-34165   GUGCCCUU--UU-AAGGUUG-ACGC----AG-UGCCUUAA-GAGGCUAACAC--------AGAAGGGCA-----AAGU-AAGUCUCCAUAAAA--CCCUGAGA---------GGAGA-UU-GU-----CAGA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAGV020589914.1/158-279      GUGCCCUU--UU-AAGGUUG-AUUC----AG-UACUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAUU-AAGUCUCCAUAAAA--CCCAGAGU---------GGAGA-UG-AU-----AAGA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAGV020885411.1/189-309      CUGCGCUU--UU-AAGGUUG-AUUC----UG-CAUUUGAA-GAGGCUAACAC--------AGAAG-GUA-----AAGU-AAGUCUCCAUAAAA--CCCAGAGA---------GGAGA-UU-AU-----AAAA-CUCC-UCUUUGG----------AUUCUGUC----UGGAGU-CACAGCU
AAHX01079130.1/33673-33553   GUGCCCUU--UU-AAGGUUG-UCGC----AG-UACUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGG-AAGUCUCCAUAAAA--CCCAGAGA----------GGGA-AA-AU-----GCAC-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGAU
AAKN02048776.1/18001-18119   UUGCCCUU--UU-AAGGUUG-ACAC----AG-UGCCUUCA-AAGGGUAAUAC--------AGAAGGGAA-----AAGA-AAGACUCCUUAAAG--CCCAGAUA---------AGAGA-UU---------AAA-CUCU-UCUUUGG----------GUCCUGUC----UGGAGU-CACAGGU
AAGV020380741.1/1292-1163    GUGCCCUU--UU-AAGAUUG-AUUC----AG-UGCUUUAA-GUGGCUAAUAUAAAAAUGUAGAAGGGUA-----AAUU-AAUUCUCCAUAAAA--CCCAGAGA---------GGAGA-UU-GU-----AAAA-CUUC-AUUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAGV020162099.1/3074-3191    GUGCCCUU--UU-AAGGUUG-ACUC----AG-UGCUUUAA-GAAGCUAACAC--------AGAAGGGAA-----AA-----GUCUCCAUAAAA--UGCAGAGA---------GGAGA-UU-GU-----AAAA-CUCC-CCUUUGG----------AUCCUGUC----UGGAAU-CAUAGCU
AAKN02028256.1/29613-29732   GUGCCCUU--UU-AAGGUUG-AUAC----AG-UGCCUUAA-GAGGCUAACAC--------AGAAGGGUA-----CAGG-AACCCUCCAUAAAA--CCCAGAGA---------AGAGA-C---U-----UACG-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAQR03113377.1/14484-14606   GUGCCCUU--UU-AAGGUUG-AUGC----AG-UGCUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGU-AAAUCUCCAUAAAA--CCCAGAGA---------AGAGAUUU-UU-----GAAA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAWZ02023673.1/55636-55753   UUGCCCUC--UU-AGAGCUG-G--U----GG-UGCUUUAA-GUGGCCAAUAC--------AGAGGGGUA-----GAGA-AAUUCUCUUUUAAA--CCCAGAGG---------CAAG---G-AU-----GACA-CUUU-CCUCUGG----------AUCCUGUC----AGGAGG-AACAAAU
EU240310.1/17-134            UUGCCCUC--UU-AAGUCUG-U--C----AG-UGUCUUAA-GUGGCCAGUAC--------GGAGGGGUA-----UAAC-AGUUCUCUCUCAAA--CCCAGAGG---------UGAGG-CU-GA-------AA-CUCU-UCUUUGG----------AUCACGCU----GAGAGG-AACAUGU
AAQR03087120.1/6291-6170     GUGCCCUU--UU-AAGGCUG-AUGC----AG-UGCUUUAA-GGGAGGAACAC--------AGAAGUAUA-----AAGU-GAGUUUCCAUAAAA--CCCAGGGA---------AGAGA-UU-AU-----AAAA-CUCU-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAGW02023741.1/4342-4222     GUGCCCUU--UU-ACAGCUA-ACAC----AG-UGCUUUAA-GAGGCUAACAC--------AGAAGGGGA-----AACU-AAGUCUCCACAAAA--CCCAGAGA---------AGAGA-GU-GU-----G-AC-CUCU-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAGW02020979.1/14284-14404   GUGUCCUU--UU-AGAGCUG-ACAG----AG-UGCUUUAA-GAGGCUAACAU--------AUAAGUGGA-----AAGU-AAGUCUCCAUAAAA--CCCAGAGA---------AGAG--AU-GG-----UCGU-UUCU-UCUUUGG----------AUCCUGUC----UGGAGU-CAACAGA
AAGW02061513.1/11131-11251   GUGCCCUU--UU-AGAGCUG-ACAG----AA-UGCUUUAA-GAGGCUAGCAC--------AGAAGGGGA-----AAGU-AAGUUUGCAUCAAA--CCCAGAGA---------AGAGG-UU-GU-----C-AG-CUCA-UCUUUGA----------AUCCUGUC----UGGAGU-CACAGCU
AAQR03045919.1/16161-16283   UUAUUCUU--UU-AAGGUUG-AUGC----AG-UUCUUUAA-GAGACUAACAU--------GGAGGGGUA-----AAGU-AAAUCUCCAUAAAA--CCUGGAGA---------AGAGAUUU-UU-----AAAA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAPE02033947.1/17066-17187   GUGCCCUU--UU-AAGGUUG-ACUC----AG-UGCCUUAA-GAGGCUAACAC--------AGAAGGGUA-----AACU-AAGUCUCCAUAAAA--CCCAGAGA---------AGAGA-UG-GU-----AAAA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAGU03060179.1/762-883       GUGCCCUU--UU-AAGGUUG-CUGC----AG-UGCUUUA-AGAGGCUAACAC--------AGAAGGGUA-----AAGU-AAGACUCUAUAAAA--CCCAGAGA---------AGAGA-CU-GG-----AGAA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAGW02029205.1/32790-32910   GUGCCCUU--UC-AGAGCUG-ACAG----AG-UGCUCUGA-GAGGCUAACAC--------AGAAAGGGA-----AAGU-AAGUCUCCAUAAAA--CCCAGAGA---------AGAG--AU-GG-----UCGU-UUCU-UCUUUGG----------AUCCUGUC----UGGAGU-CACAAAU
AAQR03158722.1/20477-20597   UUUCCUGU--CC----CUUACAUGC----AG-UGCUUUAA-GAGGCUAACAC--------AGAAGGGUA-----AAGU-AAAUCUCCACGAAA--CCCAGAGA---------AGAGAUUU-UU-----AAAA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAPE02020099.1/15927-16045   GAGC---U--CA-AGAAAUG-ACUC----CG-UGCCUUAA-GAGGCUAACCC--------AGAAAGGUA-----AAGC-AAGUCUCCAUAAAA--CCCAGAGA---------AGAGA-UG-GU-----AAAA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
AAGW02003126.1/50054-50172   GUGCCCUU--UU-AAAACUG-A--C----AG-UGCUUUAA-GAGGCUAACAC--------AGAAGGGGA-----AAGU-AAGUCUCCCUAAAA--CCCAGAGA---------AGAGA-UU-GU-----C-AU-CUCC-UCUUUGG----------AUCCUGUC----UGGAGA-UACAGCU
AAEX03009059.1/223-344       GUGCGCUC--CC-AAGGCUG-CCGC----AG-UGCCCUGG-GAGGCCAACAC--------AGAAGGGGA-----CAGC-AAGGCUCCAUGAAA--CCCAGGGA---------CGAGC-CC-GC-----AGAG-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCC
AAPE02005831.1/27958-28072   ----AUAA--CU-AAA---A-UUUC----AG-UGCCUUAA-GAGGCUAACAC--------AGAAGGGUA-----AACU-AAGUCUCCAUAAAA--CCCAGAGA---------AGAGA-UG-GU-----AAAA-CUCC-UCUUUGG----------AUCCUGUC----UGGAGU-CACAGCU
#=GC SS_cons                 :<<<<<<<..<<.---<<<<.-<-<....__.________.>-->->>>>--........>>>>>>>>>.....::::.::<-<<<<<-----..-<<<<<<<.........-<<<-.<<.__.....__>>.>>>-.>>>>>>>..........--------....>>>>>-.>::::::
#=GC RF                      gugCCcuu..cu.AAGguug.acgc....AG.UGCUUUAA.gAGgCcaacAC........agaagGGua.....AAGu.AAgUCUCCaUAAAA..CCCAgaga.........aGAgA.uu.gu.....aAaa.cUCc.ucuuUGG..........AUCCUGUC....uGGAGU.cACAgcU
//
