# STOCKHOLM 1.0
#=GF ID L19_leader
#=GF AC RF00556
#=GF DE Ribosomal protein L19 leader
#=GF AU Barrick JE
#=GF GA 36.0
#=GF NC 35.9
#=GF TC 36.0
#=GF SE Barrick JE, CMFinder
#=GF SS Predicted; Barrick JE, CMFinder
#=GF TP Cis-reg; leader;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 20.00 -Z 2958934 CM SEQDB
#=GF DR GO; 0010468; regulation of gene expression;
#=GF DR SO; 0000655; ncRNA;
#=GF RN [1]
#=GF RM 7517053
#=GF RT Diverse mechanisms for regulating ribosomal protein synthesis in
#=GF RT Escherichia coli.
#=GF RA Zengel JM, Lindahl L
#=GF RL Prog Nucleic Acid Res Mol Biol. 1994;47:331-370.
#=GF CC This family is a putative r-protein leader autoregulatory structure [1]
#=GF CC found in B. subtilis and other low-GC Gram-positive bacteria. It is
#=GF CC located in the 5' untranslated regions of mRNAs encoding ribosomal protein
#=GF CC L19 (rplS).
#=GF WK Ribosomal_protein_L19_leader
#=GF SQ 10

BA000043.1/1221406-1221449 ACGAUGUUCCGCUG-CAAUGAAGAG-AUCAUUGGCAUGAACAUCUG
AP006627.1/2412709-2412672 ACGAUAUUCCGCUG-CUGCAG------UGUUGG-CAUGAAUGUCUG
AE017333.1/1781209-1781250 ACGAUGUUCCGCUG-UGCCGGUU--AACUCGCG-CAAGAGCAUCUG
AP008934.1/1590561-1590520 ACUAUGAUCCGCUG-CUAUAUUU---UGUCGAGGCAAGAACAUAGG
AE017355.1/3678229-3678186 ACGAUGUUCCGCUG-UAAUUUAUUUAGACUUUA-UAAGAGCAUCUG
AP006716.1/1732449-1732407 ACUAUGAUCCGCUG-CUAUAUGA--AUGUCUAGGCAAGAACAUAGG
BA000028.3/1580280-1580318 ACGAUGUUCCGCUGUCCCAU-------ACUUGUUCAUGAGCAUUAG
CP000046.1/1265245-1265287 ACUAUGAUCCGCUG-CUAUAUAU--UUGUCGAGGCAAGAACAUAGG
BA000004.3/2598726-2598685 ACGAUGUUCCGCUG-CAGGGGUA---GAAGCUGUCAUGAGCAUCUG
AL009126.3/1675981-1676022 ACGAUGUUCCGCUGUGCCGGUU---UUUGUGGC-CAAGAGCAUCUG
#=GC SS_cons               ::<<<<<<<---<<.<<<<____...___>>>>->>->>>>>>>::
#=GC RF                    ACGAUGuUCCGCUG.ccauauuu...uauauggGCAAGAgCAUCUG
//
