INFERNAL1/a [1.1.4 | Dec 2020] NAME L13_leader ACC RF00555 DESC Ribosomal protein L13 leader STATES 184 NODES 46 CLEN 60 W 261 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:47:31 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 5.430420 CKSUM 554828409 NULL 0.000 0.000 0.000 0.000 GA 44.00 TC 44.30 NC 43.40 EFP7GF -12.6203 0.71919 ECMLC 0.55424 -7.14745 4.14908 1600000 628482 0.001909 ECMGC 0.47749 -12.49045 -0.72015 1600000 110380 0.003624 ECMLI 0.51535 -5.43747 5.79871 1600000 392620 0.003056 ECMGI 0.46228 -8.87774 2.71741 1600000 85103 0.004700 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 261 510 -7.944 -8.151 -0.026 -6.565 IL 1 1 2 1 4 1 12 263 513 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 263 512 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 12 262 511 -8.908 -0.011 -7.562 -0.917 -1.815 1.498 -1.469 D 4 2 3 5 3 0 6 259 508 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 11 262 511 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 11 261 510 -8.908 -0.011 -7.562 -3.337 -4.758 1.928 -4.080 D 7 5 3 8 3 0 6 258 507 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 10 261 510 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 10 260 509 -8.908 -0.011 -7.562 -2.436 -1.635 -3.183 1.758 D 10 8 3 11 3 0 5 257 506 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 9 260 509 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 9 259 508 -8.908 -0.042 -5.221 1.843 -3.208 -3.045 -2.442 D 13 11 3 14 3 0 5 257 506 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 9 259 508 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 9 258 507 -3.149 -0.181 -7.540 -3.179 -2.910 -3.962 1.885 D 16 14 3 17 3 0 4 256 505 -5.922 -0.563 -1.705 IL 17 17 3 17 3 1 8 258 507 -1.308 -0.805 -5.394 0.000 0.000 0.000 0.000 [ MATR 6 ] - 107 - A - - MR 18 17 3 20 3 1 9 257 506 -9.252 -0.010 -7.570 1.313 -1.047 -1.423 -0.604 D 19 17 3 20 3 0 3 254 503 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 7 257 506 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 106 - a - - MR 21 20 3 23 3 1 8 256 505 -9.252 -0.010 -7.570 0.781 -0.807 -1.061 0.300 D 22 20 3 23 3 0 3 253 502 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 6 256 505 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 105 - A - - MR 24 23 3 26 3 1 7 255 504 -9.252 -0.010 -7.570 1.302 -1.566 -0.457 -1.093 D 25 23 3 26 3 0 3 252 501 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 6 255 504 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 104 - a - - MR 27 26 3 29 5 1 7 254 503 -7.946 -0.060 -7.761 -5.060 -8.865 0.859 -0.597 -0.520 -0.273 D 28 26 3 29 5 0 2 251 500 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 5 254 503 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 103 U A - - MP 30 29 3 34 6 2 8 253 502 -9.548 -9.487 -0.016 -8.264 -8.544 -8.939 -6.309 -6.277 -6.356 -2.767 -5.672 -7.097 -1.524 -6.259 -3.930 -2.675 -6.844 -4.376 3.902 -6.511 -3.243 -3.656 ML 31 29 3 34 6 1 4 250 499 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 4 250 499 -7.316 -6.045 -1.954 -6.023 -0.617 -4.237 0.888 -0.761 -0.494 -0.236 D 33 29 3 34 6 0 1 244 493 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 4 252 501 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 4 252 501 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 102 G C - - MP 36 35 6 40 6 2 8 251 500 -9.548 -9.487 -0.016 -8.264 -8.544 -8.939 -3.918 -2.704 -3.788 1.386 -4.487 -4.407 0.235 -4.324 -4.119 3.153 -4.421 -0.365 0.246 -3.689 -0.770 -2.746 ML 37 35 6 40 6 1 4 248 497 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 4 248 497 -7.316 -6.045 -1.115 -6.023 -1.157 -4.237 -0.025 -0.418 -0.628 0.698 D 39 35 6 40 6 0 1 242 492 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 4 250 499 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 4 250 499 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 101 U A - - MP 42 41 6 46 6 2 7 249 498 -9.572 -4.328 -0.088 -8.287 -8.567 -8.962 -4.415 -4.359 -4.290 -0.553 -3.188 -4.874 1.202 -3.905 -4.283 0.162 -4.679 -2.294 3.082 -4.565 1.392 -3.140 ML 43 41 6 46 6 1 4 246 495 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 4 246 495 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 1 241 490 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 4 248 497 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 4 248 497 -2.892 -0.337 -6.403 -4.570 -5.676 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 99 U A - - MP 48 47 6 52 6 2 7 247 496 -9.572 -9.511 -0.015 -8.287 -8.567 -8.962 -4.775 -4.373 -4.632 0.627 -3.615 -5.328 0.785 -4.233 -4.563 -0.524 -4.969 -2.035 3.445 -5.046 -1.256 -3.414 ML 49 47 6 52 6 1 4 244 493 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 3 244 493 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 1 240 489 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 4 246 495 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 4 246 495 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 98 U A - - MP 54 53 6 58 6 2 6 245 494 -9.572 -9.511 -0.072 -8.287 -4.611 -8.962 -4.841 -4.752 -4.660 -0.901 -3.471 -5.199 0.936 -4.212 -4.650 -0.046 -5.020 -2.641 3.453 -4.959 -0.010 -3.437 ML 55 53 6 58 6 1 3 242 492 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 3 242 492 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 1 238 487 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 4 244 493 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 4 244 493 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 97 a u - - MP 60 59 6 64 6 2 4 243 492 -9.515 -9.454 -0.160 -5.724 -8.511 -3.631 -3.088 -2.704 -3.161 2.008 -3.025 -3.950 1.554 -3.368 -3.260 1.909 -3.749 0.004 1.337 -3.239 -0.775 -2.186 ML 61 59 6 64 6 1 3 241 490 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 3 241 490 -7.675 -6.404 -0.785 -6.382 -1.516 -4.596 -0.338 -0.590 -0.975 1.025 D 63 59 6 64 6 0 1 237 486 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 4 242 491 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 3 242 491 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 96 c g - - MP 66 65 6 70 4 2 5 241 490 -1.645 -3.831 -0.743 -6.306 -2.865 -2.880 -2.991 1.125 -2.509 -3.827 2.407 -0.871 -2.993 0.939 -3.535 -1.026 1.819 -3.145 -0.302 -1.997 ML 67 65 6 70 4 1 2 239 488 -4.027 -4.209 -0.407 -2.939 0.869 -0.745 -0.476 -0.223 MR 68 65 6 70 4 1 1 237 487 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 237 486 -5.974 -5.656 -0.861 -1.273 IL 70 70 5 70 4 1 4 242 492 -0.501 -2.549 -3.070 -8.202 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 4 240 489 -0.803 -1.280 -6.076 0.000 0.000 0.000 0.000 [ MATL 17 ] 23 - C - - - ML 72 71 6 74 3 1 3 237 486 -8.861 -0.011 -7.515 -1.512 1.568 -2.851 -0.872 D 73 71 6 74 3 0 0 235 484 -6.823 -0.836 -1.214 IL 74 74 3 74 3 1 2 238 487 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 24 - C - - - ML 75 74 3 77 3 1 2 236 485 -8.908 -0.011 -7.562 -1.517 1.703 -3.286 -1.773 D 76 74 3 77 3 0 0 233 483 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 2 237 486 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 25 - C - - - ML 78 77 3 80 3 1 1 235 484 -9.252 -0.390 -2.089 -3.844 1.909 -4.556 -2.930 D 79 77 3 80 3 0 0 233 482 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 1 237 486 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 90 - a - - MR 81 80 3 83 3 1 3 237 486 -8.876 -0.013 -7.193 0.519 -0.206 -0.914 0.226 D 82 80 3 83 3 0 0 220 469 -8.581 -3.759 -0.115 IR 83 83 3 83 3 1 1 236 486 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 89 - a - - MR 84 83 3 86 3 1 2 236 485 -8.876 -0.013 -7.193 0.560 0.075 -1.270 0.081 D 85 83 3 86 3 0 0 217 466 -8.581 -3.759 -0.115 IR 86 86 3 86 3 1 1 235 485 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 88 - C - - MR 87 86 3 89 3 1 2 235 484 -8.876 -0.013 -7.193 -0.216 1.058 -1.362 -0.582 D 88 86 3 89 3 0 0 214 463 -8.581 -2.201 -0.359 IR 89 89 3 89 3 1 1 234 483 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 87 - a - - MR 90 89 3 92 3 1 1 234 483 -1.593 -0.722 -4.007 0.746 -0.118 -1.311 -0.003 D 91 89 3 92 3 0 0 170 419 -8.357 -0.268 -2.587 IR 92 92 3 92 3 1 2 248 497 -0.107 -3.845 -9.216 0.000 0.000 0.000 0.000 [ MATR 24 ] - 64 - U - - MR 93 92 3 95 3 1 1 46 65 -2.729 -0.245 -7.503 -1.490 -1.394 -1.299 1.515 D 94 92 3 95 3 0 0 45 64 -1.253 -2.336 -1.388 IR 95 95 3 95 3 1 1 46 64 -3.024 -0.233 -5.262 0.000 0.000 0.000 0.000 [ MATR 25 ] - 62 - U - - MR 96 95 3 98 3 1 1 45 63 -9.252 -0.376 -2.134 -1.695 -1.244 -1.804 1.577 D 97 95 3 98 3 0 0 43 62 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 61 - a - - MR 99 98 3 101 5 1 1 44 62 -1.721 -1.245 -7.413 -7.625 -1.923 0.285 -0.030 -0.500 0.131 D 100 98 3 101 5 0 0 41 60 -6.906 -0.204 -4.532 -5.963 -3.958 IR 101 101 3 101 5 1 1 44 63 -1.637 -0.636 -7.478 -5.646 -6.752 0.000 0.000 0.000 0.000 [ MATP 27 ] 26 56 c g - - MP 102 101 3 106 6 2 2 41 60 -9.377 -9.316 -0.017 -8.092 -8.372 -8.767 -3.784 -3.471 -3.767 2.349 -3.051 -4.524 2.575 -3.594 -3.753 0.528 -4.212 -1.289 0.729 -4.018 -0.728 -2.655 ML 103 101 3 106 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 40 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 39 58 -11.031 -9.730 -0.380 -6.209 -6.226 -2.302 IL 106 106 5 106 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 41 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 27 55 a u - - MP 108 107 6 112 6 2 2 39 58 -9.572 -9.511 -0.015 -8.287 -8.567 -8.962 -0.553 -2.620 -2.796 2.298 -2.646 -3.665 1.090 -3.013 -2.832 0.794 -3.385 -0.851 2.017 -2.960 -0.647 -1.929 ML 109 107 6 112 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 38 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 39 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 28 54 c g - - MP 114 113 6 118 6 2 2 37 56 -9.572 -9.511 -0.015 -8.287 -8.567 -8.962 -1.594 -3.476 -3.559 0.200 -2.831 -4.342 2.624 -3.417 -3.539 0.337 -4.049 -1.500 2.288 -3.741 -0.004 -2.474 ML 115 113 6 118 6 1 1 36 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 36 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 37 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 53 g u - - MP 120 119 6 124 6 2 2 35 54 -9.572 -9.511 -0.015 -8.287 -8.567 -8.962 -3.832 -3.141 -3.938 1.218 -3.944 -5.035 0.346 -4.018 -3.850 0.949 -4.388 2.342 2.124 -4.251 -1.626 -2.809 ML 121 119 6 124 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 34 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 52 g c - - MP 126 125 6 130 6 2 2 33 52 -2.887 -9.511 -0.225 -8.287 -8.567 -8.962 -2.119 -2.598 -3.442 2.268 -3.941 -4.171 0.306 -3.922 -3.681 2.578 -4.081 0.251 0.447 -3.433 -1.556 -2.478 ML 127 125 6 130 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 33 51 -4.071 -0.687 -1.821 -5.989 -6.765 -6.426 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 32 51 -3.390 -0.230 -6.901 -5.069 -6.175 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 50 u a - - MP 132 131 6 136 6 2 2 31 49 -9.572 -9.511 -0.015 -8.287 -8.567 -8.962 -3.785 -3.666 -3.804 1.804 -3.041 -4.551 1.296 -3.631 -3.792 0.241 -4.272 -1.615 2.782 -4.014 -0.220 -2.709 ML 133 131 6 136 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 49 A U - - MP 138 137 6 142 6 2 2 29 47 -5.243 -9.511 -0.052 -8.287 -8.567 -8.962 -4.508 -3.412 -4.564 3.489 -5.145 -6.108 -0.741 -4.638 -4.398 0.999 -4.959 -0.838 -0.008 -5.186 -2.699 -3.334 ML 139 137 6 142 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 28 47 -3.001 -3.264 -0.526 -4.919 -5.696 -5.356 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 48 g c - - MP 144 143 6 148 6 2 2 27 45 -9.572 -9.511 -0.015 -8.287 -8.567 -8.962 -4.221 -2.959 -4.188 2.523 -5.257 -5.131 -0.577 -4.619 -4.279 2.687 -4.703 0.853 -0.810 -4.320 -2.539 -3.060 ML 145 143 6 148 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 36 47 G C - - MP 150 149 6 154 4 2 2 25 43 -7.944 -8.151 -0.026 -6.565 -5.953 -3.776 -6.188 -0.707 -6.945 -5.209 -1.976 -6.590 -5.165 3.813 -2.038 -1.556 -2.298 -5.219 -4.083 -5.105 ML 151 149 6 154 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - C - - - ML 156 155 6 158 3 1 1 22 40 -8.908 -0.011 -7.562 -3.844 1.909 -4.556 -2.930 D 157 155 6 158 3 0 0 21 40 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - C - - - ML 159 158 3 161 3 1 1 21 39 -8.908 -0.011 -7.562 -3.844 1.909 -4.556 -2.930 D 160 158 3 161 3 0 0 20 39 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - - - ML 162 161 3 164 3 1 1 20 38 -8.908 -0.011 -7.562 -3.844 1.909 -4.556 -2.930 D 163 161 3 164 3 0 0 19 38 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - C - - - ML 165 164 3 167 3 1 1 18 37 -8.908 -0.011 -7.562 -3.844 1.909 -4.556 -2.930 D 166 164 3 167 3 0 0 18 37 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - G - - - ML 168 167 3 170 3 1 1 17 35 -8.908 -0.011 -7.562 -3.337 -4.758 1.928 -4.080 D 169 167 3 170 3 0 0 17 35 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - G - - - ML 171 170 3 173 3 1 1 16 34 -8.908 -0.011 -7.562 -2.668 -3.836 1.850 -2.582 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - A - - - ML 174 173 3 176 3 1 1 15 32 -8.908 -0.011 -7.562 1.838 -3.171 -3.020 -2.387 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - A - - - ML 177 176 3 179 3 1 1 13 29 -4.335 -0.475 -2.116 1.926 -4.189 -3.671 -3.897 D 178 176 3 179 3 0 0 11 27 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 15 30 -1.719 -0.623 -4.419 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - a - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 0.932 -0.905 -1.006 0.084 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME L13_leader ACC RF00555 DESC Ribosomal protein L13 leader LENG 60 MAXL 351 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:47:31 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 26 EFFN 11.866943 CKSUM 554828409 STATS LOCAL MSV -8.0573 0.71919 STATS LOCAL VITERBI -8.7881 0.71919 STATS LOCAL FORWARD -3.6512 0.71919 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.25940 1.43682 1.59687 1.28748 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 0.00000 * 1 2.26143 2.83478 0.25997 2.71824 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 2 4.51857 5.61055 0.02135 5.02705 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 3 3.78521 2.75568 4.29522 0.10525 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 4 0.06164 4.32742 4.29064 3.41490 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03810 5.07932 3.46865 1.46634 0.26236 1.09861 0.40547 5 4.56993 4.28841 5.13216 0.03045 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.19849 1.96334 3.22789 0.74079 0.64767 0.33612 1.25365 6 5.79602 5.02934 5.07756 0.01594 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.01295 5.04635 5.04635 1.46634 0.26236 2.10537 0.12988 7 1.76034 2.94441 0.40965 2.19375 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01295 5.04635 5.04635 1.46634 0.26236 0.27919 1.41222 8 4.05365 2.61474 2.95915 0.15363 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 9 2.31089 2.98774 3.57832 0.19540 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 10 4.12544 2.68491 2.93326 0.14804 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.09422 5.07932 2.48057 1.46634 0.26236 1.09861 0.40547 11 1.11930 1.68391 1.23498 1.62452 14 a - - < 1.38629 1.38629 1.38629 1.38629 0.19756 4.99868 1.75721 1.46634 0.26236 0.13866 2.04426 12 1.82118 0.84432 2.05850 1.27058 15 c - - < 1.38629 1.38629 1.38629 1.38629 0.44841 1.03843 4.91334 1.38628 0.28769 0.33989 1.24427 13 2.73793 0.20387 4.04171 2.28120 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.01301 5.04162 5.04162 1.46634 0.26236 0.25308 1.49791 14 2.61924 0.12075 4.50902 3.51064 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 15 4.92481 0.02631 5.28085 4.29636 25 C - - - 1.38629 1.38629 1.38629 1.38629 0.31213 5.07932 1.33983 1.46634 0.26236 1.09861 0.40547 16 0.82856 0.81903 3.03655 2.59745 26 c - - < 1.38629 1.38629 1.38629 1.38629 0.01687 4.78405 4.78405 1.46634 0.26236 0.04644 3.09278 17 0.61152 2.97363 2.77656 1.06681 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 18 2.67574 0.79358 2.88223 0.86059 28 c - - < 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 19 1.97568 3.89324 0.68881 1.08240 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 20 0.91670 2.97002 0.78361 2.38481 30 g - - < 1.38629 1.38629 1.38629 1.38629 0.33294 1.28387 5.07932 0.04435 3.13763 1.09861 0.40547 21 1.28659 2.52668 3.35168 0.49620 32 U - - < 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 22 0.20041 4.27476 2.23350 2.80447 33 A - - < 1.38629 1.38629 1.38629 1.38629 0.06529 2.86502 5.07932 0.20575 1.68222 1.09861 0.40547 23 0.82517 3.78497 0.67186 3.56239 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 24 3.84445 4.85462 0.03807 4.80782 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 25 4.92481 0.02631 5.28085 4.29636 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 26 4.92481 0.02631 5.28085 4.29636 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 27 4.92481 0.02631 5.28085 4.29636 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 28 4.92481 0.02631 5.28085 4.29636 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 29 4.51857 5.61055 0.02135 5.02705 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 30 4.03276 4.89425 0.06131 3.37402 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 31 0.06418 4.29743 4.26975 3.36453 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 32 0.01948 5.26858 4.86997 5.04098 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.39873 2.79276 1.31835 0.19214 1.74406 1.09861 0.40547 33 0.63039 2.21795 2.29147 1.35609 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01700 4.77639 4.77639 1.46634 0.26236 0.04547 3.11329 34 4.83122 0.06815 3.55430 3.53026 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 35 3.77002 0.94029 3.57743 0.58252 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 36 2.84226 2.41492 4.05216 0.18039 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 37 0.56591 3.54012 2.12540 1.25963 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.29103 1.40126 5.07932 0.04980 3.02455 1.09861 0.40547 38 2.38394 0.94604 2.77626 0.78249 52 u - - > 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 39 1.09381 2.75198 3.69765 0.55082 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 40 0.92992 3.05880 0.68770 2.88709 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 41 0.91758 3.06272 2.79413 0.70808 55 u - - > 1.38629 1.38629 1.38629 1.38629 0.31213 5.07932 1.33983 1.46634 0.26236 1.09861 0.40547 42 2.85305 3.27731 0.78413 0.80277 56 g - - > 1.38629 1.38629 1.38629 1.38629 1.46315 0.91386 1.00097 0.51469 0.91052 0.04644 3.09278 43 1.18296 1.34065 1.75326 1.35191 61 a - - - 1.38629 1.38629 1.38629 1.38629 0.01714 4.76825 4.76825 1.46634 0.26236 0.04450 3.13443 44 3.28337 2.49343 2.83916 0.19675 62 U - - - 1.38629 1.38629 1.38629 1.38629 0.20268 1.73026 5.07932 0.06881 2.71058 1.09861 0.40547 45 3.16026 2.74662 2.36689 0.22356 64 U - - - 1.38629 1.38629 1.38629 1.38629 0.81913 1.11559 1.46333 2.97507 0.05239 1.09861 0.40547 46 0.77485 1.41489 2.66872 1.48310 87 a - - - 1.38629 1.38629 1.38629 1.38629 0.08510 4.82412 2.60982 1.46634 0.26236 3.66838 0.02585 47 1.66560 0.45811 2.64042 2.23386 88 C - - - 1.38629 1.38629 1.38629 1.38629 0.01734 4.75636 4.75636 1.46634 0.26236 3.85742 0.02135 48 0.93224 1.24338 2.61533 1.40740 89 a - - - 1.38629 1.38629 1.38629 1.38629 0.01734 4.75636 4.75636 1.46634 0.26236 2.41706 0.09341 49 0.97081 1.51006 2.16835 1.25190 90 a - - - 1.38629 1.38629 1.38629 1.38629 0.65941 1.10909 1.87742 1.09804 0.40575 0.38698 1.13664 50 1.38175 2.19379 0.86437 1.53224 96 g - - > 1.38629 1.38629 1.38629 1.38629 0.01536 4.87686 4.87686 1.46634 0.26236 0.06362 2.78644 51 1.77592 1.49058 1.61125 0.90191 97 u - - > 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 52 0.22645 2.98224 2.03534 3.84783 98 A - - > 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 53 0.21053 3.83975 2.81026 2.22420 99 A - - > 1.38629 1.38629 1.38629 1.38629 0.11698 2.26169 5.07932 0.11549 2.21578 1.09861 0.40547 54 0.41909 3.00293 1.31337 3.73791 101 A - - > 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 55 2.64101 0.46933 2.38157 1.55644 102 C - - > 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 56 0.03049 5.14558 4.37816 4.45157 103 A - - > 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 57 0.70699 1.83708 1.77653 1.72389 104 a - - : 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 58 0.37437 2.82793 1.72730 2.58524 105 A - - : 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 59 0.76192 2.09981 2.31822 1.16379 106 a - - : 1.38629 1.38629 1.38629 1.38629 0.01253 5.07932 5.07932 1.46634 0.26236 1.09861 0.40547 60 0.36177 2.27153 2.70921 2.01129 107 A - - : 1.38629 1.38629 1.38629 1.38629 0.00628 5.07307 * 1.46634 0.26236 0.00000 * //