INFERNAL1/a [1.1.5 | Sep 2023] NAME L13_leader ACC RF00555 DESC Ribosomal protein L13 leader STATES 184 NODES 46 CLEN 60 W 248 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 08:58:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00555/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 6.027100 CKSUM 554828409 NULL 0.000 0.000 0.000 0.000 GA 44.00 TC 44.00 NC 43.80 EFP7GF -13.0846 0.71919 ECMLC 0.55965 -6.91314 4.25751 1600000 622668 0.001927 ECMGC 0.44191 -13.31626 -0.60720 1600000 109945 0.003638 ECMLI 0.50748 -5.49722 5.85984 1600000 382161 0.003140 ECMGI 0.45769 -9.02758 2.70715 1600000 86019 0.004650 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 248 485 -8.061 -8.269 -0.024 -6.683 IL 1 1 2 1 4 1 12 250 487 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 250 487 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 12 249 486 -9.021 -0.010 -7.675 -0.692 -1.525 1.379 -1.209 D 4 2 3 5 3 0 6 246 483 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 11 249 486 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 11 248 485 -9.021 -0.010 -7.675 -3.506 -4.944 1.936 -4.247 D 7 5 3 8 3 0 6 245 482 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 10 248 485 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 10 247 484 -9.021 -0.010 -7.675 -2.553 -1.631 -3.298 1.768 D 10 8 3 11 3 0 5 244 481 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 9 247 484 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 9 246 483 -9.021 -0.058 -4.743 1.821 -3.091 -3.016 -2.140 D 13 11 3 14 3 0 5 244 480 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 9 246 483 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 9 245 482 -2.997 -0.201 -7.634 -3.342 -3.053 -4.128 1.897 D 16 14 3 17 3 0 5 243 480 -6.084 -0.492 -1.867 IL 17 17 3 17 3 1 8 245 482 -1.355 -0.769 -5.486 0.000 0.000 0.000 0.000 [ MATR 6 ] - 107 - A - - MR 18 17 3 20 3 1 9 244 480 -9.362 -0.009 -7.680 1.314 -0.939 -1.337 -0.748 D 19 17 3 20 3 0 3 241 478 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 7 244 481 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 106 - a - - MR 21 20 3 23 3 1 8 243 479 -9.362 -0.009 -7.680 0.875 -0.889 -0.978 0.162 D 22 20 3 23 3 0 3 240 477 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 6 243 480 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 105 - A - - MR 24 23 3 26 3 1 8 242 478 -9.362 -0.009 -7.680 1.248 -1.395 -0.485 -0.917 D 25 23 3 26 3 0 3 239 476 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 6 242 479 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 104 - a - - MR 27 26 3 29 5 1 7 241 477 -8.052 -0.079 -7.867 -4.535 -8.971 0.723 -0.521 -0.395 -0.166 D 28 26 3 29 5 0 3 238 475 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 5 240 477 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 103 U A - - MP 30 29 3 34 6 2 8 240 477 -9.601 -9.540 -0.015 -8.317 -8.597 -8.992 -5.423 -5.430 -5.493 -1.988 -4.899 -6.256 -0.809 -5.454 -2.629 -1.927 -6.004 -3.591 3.826 -5.671 -2.604 -2.698 ML 31 29 3 34 6 1 4 237 474 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 4 237 474 -7.490 -6.219 -2.128 -6.197 -0.532 -4.411 1.043 -0.911 -0.656 -0.370 D 33 29 3 34 6 0 2 231 468 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 4 239 476 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 5 239 475 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 102 G C - - MP 36 35 6 40 6 2 8 238 475 -9.601 -9.540 -0.015 -8.317 -8.597 -8.992 -3.921 -2.723 -3.793 1.504 -4.485 -4.422 0.227 -4.330 -4.131 3.103 -4.436 -0.388 0.395 -3.697 -0.832 -2.753 ML 37 35 6 40 6 1 4 235 472 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 4 235 472 -7.490 -6.219 -0.935 -6.197 -1.331 -4.411 -0.180 -0.493 -0.800 0.874 D 39 35 6 40 6 0 1 230 467 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 4 237 474 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 4 237 473 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 101 U A - - MP 42 41 6 46 6 2 8 236 473 -9.638 -4.528 -0.077 -8.353 -8.633 -9.028 -4.469 -4.392 -4.356 -0.563 -3.264 -4.960 1.146 -3.973 -4.341 0.373 -4.747 -2.297 3.114 -4.624 1.249 -3.192 ML 43 41 6 46 6 1 4 233 470 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 4 233 470 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 1 228 465 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 4 235 472 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 5 235 471 -2.854 -0.347 -6.365 -4.533 -5.638 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 99 U A - - MP 48 47 6 52 6 2 7 234 471 -9.638 -9.577 -0.015 -8.353 -8.633 -9.028 -4.903 -4.459 -4.751 0.742 -3.733 -5.459 0.669 -4.341 -4.673 -0.635 -5.077 -2.092 3.463 -5.192 -1.373 -3.530 ML 49 47 6 52 6 1 4 231 468 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 4 231 468 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 1 227 464 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 4 233 470 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 4 233 469 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 98 U A - - MP 54 53 6 58 6 2 6 232 469 -9.638 -9.577 -0.051 -8.353 -5.190 -9.028 -4.904 -4.782 -4.713 -0.909 -3.510 -5.253 0.912 -4.250 -4.698 0.254 -5.065 -2.632 3.455 -5.021 -0.317 -3.491 ML 55 53 6 58 6 1 4 230 466 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 3 229 466 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 1 226 463 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 4 231 468 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 4 231 468 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 97 g c - - MP 60 59 6 64 6 2 4 230 467 -9.601 -9.541 -0.234 -5.205 -8.597 -3.092 -3.170 -2.771 -3.238 1.868 -3.102 -4.021 1.619 -3.445 -3.342 1.991 -3.827 0.104 1.355 -3.310 -0.841 -2.259 ML 61 59 6 64 6 1 3 228 465 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 3 228 465 -7.488 -6.217 -0.937 -6.196 -1.330 -4.409 -0.179 -0.493 -0.798 0.872 D 63 59 6 64 6 0 1 225 462 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 4 229 466 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 4 229 466 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 96 c g - - MP 66 65 6 70 4 2 5 228 465 -1.650 -3.971 -0.726 -6.291 -2.752 -2.778 -2.886 1.141 -2.462 -3.723 2.308 -0.472 -2.897 1.075 -3.443 -0.967 1.759 -3.036 -0.290 -1.921 ML 67 65 6 70 4 1 2 226 463 -4.174 -4.357 -0.362 -3.086 1.020 -0.887 -0.631 -0.348 MR 68 65 6 70 4 1 2 225 462 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 1 224 461 -6.404 -6.086 -0.747 -1.404 IL 70 70 5 70 4 1 4 229 466 -0.600 -2.579 -2.566 -7.973 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 4 227 464 -0.939 -1.121 -5.756 0.000 0.000 0.000 0.000 [ MATL 17 ] 23 - C - - - ML 72 71 6 74 3 1 3 225 462 -8.950 -0.010 -7.604 -1.342 1.479 -2.726 -0.584 D 73 71 6 74 3 0 0 223 460 -7.120 -0.639 -1.511 IL 74 74 3 74 3 1 2 225 462 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 24 - C - - - ML 75 74 3 77 3 1 2 224 461 -9.021 -0.010 -7.675 -1.522 1.718 -3.426 -1.898 D 76 74 3 77 3 0 0 221 458 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 2 224 461 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 25 - C - - - ML 78 77 3 80 3 1 1 223 460 -9.362 -0.493 -1.796 -4.037 1.921 -4.718 -3.114 D 79 77 3 80 3 0 0 220 457 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 2 226 462 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 90 - a - - MR 81 80 3 83 3 1 3 225 462 -8.882 -0.013 -7.199 0.664 -0.458 -0.805 0.157 D 82 80 3 83 3 0 0 206 443 -8.911 -4.089 -0.091 IR 83 83 3 83 3 1 2 225 461 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 89 - a - - MR 84 83 3 86 3 1 3 224 461 -8.882 -0.013 -7.199 0.699 -0.055 -1.275 0.002 D 85 83 3 86 3 0 0 203 440 -8.911 -4.089 -0.091 IR 86 86 3 86 3 1 1 224 460 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 88 - c - - MR 87 86 3 89 3 1 2 223 460 -8.882 -0.013 -7.199 -0.066 0.913 -1.113 -0.514 D 88 86 3 89 3 0 0 199 436 -8.911 -2.633 -0.257 IR 89 89 3 89 3 1 1 223 459 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 87 - a - - MR 90 89 3 92 3 1 1 222 459 -1.777 -0.589 -4.523 0.563 -0.002 -1.288 0.156 D 91 89 3 92 3 0 0 159 396 -8.755 -0.199 -2.985 IR 92 92 3 92 3 1 2 237 474 -0.112 -3.778 -9.020 0.000 0.000 0.000 0.000 [ MATR 24 ] - 64 - U - - MR 93 92 3 95 3 1 1 45 64 -2.984 -0.203 -7.639 -1.507 -1.424 -1.053 1.482 D 94 92 3 95 3 0 0 44 63 -1.617 -2.120 -1.172 IR 95 95 3 95 3 1 1 45 64 -2.910 -0.254 -5.149 0.000 0.000 0.000 0.000 [ MATR 25 ] - 62 - U - - MR 96 95 3 98 3 1 1 44 63 -9.362 -0.409 -2.029 -1.724 -1.279 -1.608 1.564 D 97 95 3 98 3 0 0 42 61 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 61 - a - - MR 99 98 3 101 5 1 1 43 62 -2.025 -1.261 -7.486 -7.698 -1.615 0.403 -0.211 -0.583 0.198 D 100 98 3 101 5 0 0 41 60 -7.054 -0.183 -4.681 -6.112 -4.106 IR 101 101 3 101 5 1 1 43 62 -1.761 -0.588 -7.288 -5.455 -6.561 0.000 0.000 0.000 0.000 [ MATP 27 ] 26 56 c g - - MP 102 101 3 106 6 2 2 41 60 -9.390 -9.329 -0.017 -8.106 -8.386 -8.781 -3.849 -3.566 -3.822 2.176 -3.040 -4.563 2.732 -3.611 -3.803 0.431 -4.257 -1.386 0.754 -4.076 -0.706 -2.695 ML 103 101 3 106 6 1 1 40 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 40 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 39 58 -11.328 -10.026 -0.301 -6.506 -6.523 -2.598 IL 106 106 5 106 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 27 55 a u - - MP 108 107 6 112 6 2 2 39 58 -9.638 -9.577 -0.015 -8.353 -8.633 -9.028 -0.142 -2.734 -2.950 2.521 -2.829 -3.836 0.892 -3.170 -2.981 0.687 -3.533 -0.910 1.860 -3.128 -0.834 -2.077 ML 109 107 6 112 6 1 1 38 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 38 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 28 54 c g - - MP 114 113 6 118 6 2 2 37 56 -9.638 -9.577 -0.015 -8.353 -8.633 -9.028 -1.208 -3.646 -3.721 0.060 -2.943 -4.487 2.792 -3.545 -3.698 0.202 -4.199 -1.648 2.168 -3.910 -0.222 -2.620 ML 115 113 6 118 6 1 1 36 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 53 g u - - MP 120 119 6 124 6 2 2 35 54 -9.638 -9.577 -0.015 -8.353 -8.633 -9.028 -4.005 -3.200 -4.112 1.425 -4.270 -5.238 0.037 -4.222 -4.011 1.024 -4.541 2.505 1.878 -4.439 -1.927 -2.967 ML 121 119 6 124 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 52 g c - - MP 126 125 6 130 6 2 2 33 52 -3.144 -9.577 -0.188 -8.353 -8.633 -9.028 -1.652 -2.644 -3.442 2.395 -3.907 -4.195 0.239 -3.908 -3.656 2.435 -4.077 0.448 0.367 -3.455 -1.586 -2.493 ML 127 125 6 130 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 33 51 -3.950 -0.784 -1.667 -5.868 -6.644 -6.304 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 32 50 -3.277 -0.250 -6.789 -4.956 -6.062 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 50 u a - - MP 132 131 6 136 6 2 2 31 49 -9.638 -9.577 -0.015 -8.353 -8.633 -9.028 -3.984 -3.876 -3.982 1.591 -3.138 -4.707 1.231 -3.756 -3.963 0.048 -4.432 -1.807 2.930 -4.202 -0.035 -2.863 ML 133 131 6 136 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 49 A U - - MP 138 137 6 142 6 2 2 29 47 -5.459 -9.577 -0.046 -8.353 -8.633 -9.028 -4.698 -3.568 -4.756 3.552 -5.377 -6.421 -0.964 -4.800 -4.557 0.760 -5.129 -0.969 0.010 -5.468 -2.923 -3.504 ML 139 137 6 142 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 28 47 -2.963 -3.226 -0.544 -4.881 -5.657 -5.318 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 48 a u - - MP 144 143 6 148 6 2 2 26 45 -9.638 -9.577 -0.015 -8.353 -8.633 -9.028 -4.371 -3.106 -4.364 2.661 -5.517 -5.455 -0.851 -4.748 -4.392 2.456 -4.853 1.315 -1.066 -4.593 -2.803 -3.204 ML 145 143 6 148 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 36 47 G C - - MP 150 149 6 154 4 2 2 24 43 -8.061 -8.269 -0.024 -6.683 -6.129 -3.880 -6.410 -0.847 -7.162 -5.296 -2.163 -6.794 -5.268 3.818 -1.451 -1.669 -2.487 -5.348 -4.283 -5.322 ML 151 149 6 154 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - C - - - ML 156 155 6 158 3 1 1 22 40 -9.021 -0.010 -7.675 -4.037 1.921 -4.718 -3.114 D 157 155 6 158 3 0 0 21 40 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - C - - - ML 159 158 3 161 3 1 1 21 39 -9.021 -0.010 -7.675 -4.037 1.921 -4.718 -3.114 D 160 158 3 161 3 0 0 20 39 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - - - ML 162 161 3 164 3 1 1 19 38 -9.021 -0.010 -7.675 -4.037 1.921 -4.718 -3.114 D 163 161 3 164 3 0 0 19 38 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - C - - - ML 165 164 3 167 3 1 1 18 37 -9.021 -0.010 -7.675 -4.037 1.921 -4.718 -3.114 D 166 164 3 167 3 0 0 18 37 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - G - - - ML 168 167 3 170 3 1 1 17 35 -9.021 -0.010 -7.675 -3.506 -4.944 1.936 -4.247 D 169 167 3 170 3 0 0 17 35 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - G - - - ML 171 170 3 173 3 1 1 16 34 -9.021 -0.010 -7.675 -2.702 -3.843 1.844 -2.417 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - A - - - ML 174 173 3 176 3 1 1 15 32 -9.021 -0.010 -7.675 1.830 -3.153 -3.061 -2.237 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - A - - - ML 177 176 3 179 3 1 1 13 28 -4.093 -0.414 -2.388 1.935 -4.381 -3.854 -4.096 D 178 176 3 179 3 0 0 11 26 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 14 29 -1.791 -0.585 -4.491 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - A - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 1.015 -1.016 -0.994 -0.026 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME L13_leader ACC RF00555 DESC Ribosomal protein L13 leader LENG 60 MAXL 342 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 08:58:41 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00555/CM NSEQ 26 EFFN 13.612549 CKSUM 554828409 STATS LOCAL MSV -8.1355 0.71919 STATS LOCAL VITERBI -8.7477 0.71919 STATS LOCAL FORWARD -3.7366 0.71919 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.24902 1.45259 1.60057 1.28205 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 0.00000 * 1 2.07213 2.61066 0.32627 2.53852 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 2 4.64925 5.76184 0.01863 5.15908 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 3 3.89270 2.72205 4.40183 0.10357 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 4 0.07584 4.25502 4.28625 3.09917 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.04972 5.17351 3.15020 1.46634 0.26236 1.09861 0.40547 5 4.73302 4.43812 5.30024 0.02594 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.23489 1.87577 2.88058 0.67578 0.71082 0.23462 1.56479 6 4.69432 3.57258 3.28579 0.07757 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.01198 5.12395 5.12395 1.46634 0.26236 2.44545 0.09068 7 1.64937 2.98409 0.45081 2.11919 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01198 5.12395 5.12395 1.46634 0.26236 0.19040 1.75230 8 4.15127 2.73005 2.72409 0.15849 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 9 2.23273 3.15282 3.68610 0.19242 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 10 4.23307 2.79572 2.65622 0.15758 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.06133 5.17351 2.92215 1.46634 0.26236 1.09861 0.40547 11 1.24732 1.62464 1.13821 1.63295 14 g - - < 1.38629 1.38629 1.38629 1.38629 0.27521 5.12416 1.44972 1.46634 0.26236 0.19104 1.74926 12 1.75174 0.87499 1.94721 1.32054 15 c - - < 1.38629 1.38629 1.38629 1.38629 0.43520 1.06240 4.92803 1.22491 0.34783 0.33320 1.26099 13 2.58742 0.26283 3.95872 1.98902 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.01206 5.11676 5.11676 1.46634 0.26236 0.17078 1.85154 14 2.57572 0.11829 4.63456 3.65921 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 15 5.05810 0.02300 5.39990 4.43444 25 C - - - 1.38629 1.38629 1.38629 1.38629 0.38042 5.17351 1.16873 1.46634 0.26236 1.09861 0.40547 16 0.96536 0.68643 3.14116 2.62348 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.01644 4.80953 4.80953 1.46634 0.26236 0.03581 3.34744 17 0.45058 3.44552 3.01760 1.26609 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 18 2.66852 0.65005 3.15103 1.00562 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 19 1.78716 4.21135 0.60990 1.29342 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 20 0.78616 3.14352 0.86441 2.52597 30 a - - < 1.38629 1.38629 1.38629 1.38629 0.25853 1.50440 5.17351 0.05024 3.01596 1.09861 0.40547 21 1.48499 2.67286 3.60626 0.38966 32 U - - < 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 22 0.18044 4.44163 2.40697 2.76096 33 A - - < 1.38629 1.38629 1.38629 1.38629 0.05436 3.05236 5.17351 0.22463 1.60350 1.09861 0.40547 23 0.74662 4.17571 0.71194 3.91288 35 g - - < 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 24 3.96249 4.98887 0.03348 4.94807 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 25 5.05810 0.02300 5.39990 4.43444 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 26 5.05810 0.02300 5.39990 4.43444 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 27 5.05810 0.02300 5.39990 4.43444 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 28 5.05810 0.02300 5.39990 4.43444 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 29 4.64925 5.76184 0.01863 5.15908 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 30 4.10226 4.95095 0.06690 3.19171 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 31 0.07068 4.30383 4.32207 3.18333 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 32 0.01661 5.43538 5.02876 5.19160 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.34198 2.65037 1.51864 0.15335 1.95073 1.09861 0.40547 33 0.57080 2.32870 2.26960 1.45178 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01451 4.93355 4.93355 1.46634 0.26236 0.05044 3.01216 34 4.95963 0.07409 3.26208 3.64642 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 35 4.09485 1.15887 3.95883 0.43014 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 36 2.79046 2.59787 4.21696 0.16319 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 37 0.47046 3.79047 2.11827 1.45903 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.21973 1.65235 5.17351 0.05812 2.87423 1.09861 0.40547 38 2.39421 1.09689 2.94841 0.64927 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 39 1.30356 2.65980 4.00674 0.44585 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 40 1.01632 3.32587 0.58091 3.15254 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 41 1.00620 3.35032 3.26527 0.57780 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.38042 5.17351 1.16873 1.46634 0.26236 1.09861 0.40547 42 2.88185 3.37836 0.65619 0.93894 56 G - - > 1.38629 1.38629 1.38629 1.38629 1.39491 1.09495 0.87325 0.47576 0.97131 0.03581 3.34744 43 1.07442 1.50853 1.83592 1.28085 61 a - - - 1.38629 1.38629 1.38629 1.38629 0.01596 4.83871 4.83871 1.46634 0.26236 0.03830 3.28143 44 3.35895 2.52405 2.62020 0.20788 62 U - - - 1.38629 1.38629 1.38629 1.38629 0.16847 1.90125 5.17351 0.07419 2.63802 1.09861 0.40547 45 3.23894 2.77819 2.12964 0.24876 64 U - - - 1.38629 1.38629 1.38629 1.38629 0.82813 1.33281 1.20598 2.96301 0.05305 1.09861 0.40547 46 0.92551 1.31381 2.64712 1.33174 87 a - - - 1.38629 1.38629 1.38629 1.38629 0.07787 4.82575 2.70459 1.46634 0.26236 4.00468 0.01840 47 1.52254 0.55517 2.37421 2.16477 88 C - - - 1.38629 1.38629 1.38629 1.38629 0.01719 4.76507 4.76507 1.46634 0.26236 4.13027 0.01621 48 0.80937 1.35410 2.64798 1.48771 89 a - - - 1.38629 1.38629 1.38629 1.38629 0.01719 4.76507 4.76507 1.46634 0.26236 2.41564 0.09355 49 0.85048 1.74477 2.06525 1.30446 90 a - - - 1.38629 1.38629 1.38629 1.38629 0.68775 1.35974 1.42476 1.00455 0.45603 0.42854 1.05400 50 1.42612 2.05931 0.92879 1.43889 96 g - - > 1.38629 1.38629 1.38629 1.38629 0.01549 4.86846 4.86846 1.46634 0.26236 0.04132 3.20707 51 1.76104 1.39132 1.55276 1.00042 97 u - - > 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 52 0.21214 2.68927 2.26480 3.94431 98 A - - > 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 53 0.20627 3.94394 2.96792 2.15759 99 A - - > 1.38629 1.38629 1.38629 1.38629 0.09727 2.44157 5.17351 0.12546 2.13787 1.09861 0.40547 54 0.39431 2.75161 1.42817 3.80401 101 A - - > 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 55 2.49350 0.52185 2.43548 1.44222 102 C - - > 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 56 0.08839 4.41524 3.29325 3.34190 103 A - - > 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 57 0.81281 1.77154 1.66220 1.62661 104 a - - : 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 58 0.41093 2.64493 1.74637 2.39087 105 A - - : 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 59 0.69098 2.17435 2.22715 1.28230 106 A - - : 1.38629 1.38629 1.38629 1.38629 0.01139 5.17351 5.17351 1.46634 0.26236 1.09861 0.40547 60 0.36469 2.14066 2.58758 2.18204 107 A - - : 1.38629 1.38629 1.38629 1.38629 0.00571 5.16783 * 1.46634 0.26236 0.00000 * //