INFERNAL1/a [1.1.5 | Sep 2023] NAME snoCD11 ACC RF00538 DESC Small nucleolar RNA CD11 STATES 229 NODES 71 CLEN 75 W 93 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 18:11:00 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00538/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 2.618408 CKSUM 3973081462 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 60.00 NC 59.10 EFP7GF -8.8556 0.71870 ECMLC 0.60436 -5.66592 3.30529 1600000 271549 0.004419 ECMGC 0.41473 -16.01565 -3.15560 1600000 82865 0.004827 ECMLI 0.61217 -2.88228 5.33325 1600000 183389 0.006543 ECMGI 0.41682 -11.77848 0.10968 1600000 56768 0.007046 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 93 113 -7.103 -8.348 -0.095 -4.220 IL 1 1 2 1 4 1 33 94 114 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 34 94 115 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 85 - u - - MR 3 2 3 5 3 3 34 93 113 -8.556 -0.016 -6.874 0.209 -0.411 -0.916 0.643 D 4 2 3 5 3 0 29 91 111 -6.611 -1.788 -0.514 IR 5 5 3 5 3 1 33 93 114 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 84 - u - - MR 6 5 3 8 3 3 33 92 112 -8.556 -0.016 -6.874 0.084 -0.139 -1.165 0.666 D 7 5 3 8 3 0 28 90 110 -6.611 -1.788 -0.514 IR 8 8 3 8 3 1 33 92 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 83 - a - - MR 9 8 3 11 3 2 33 91 111 -8.556 -0.016 -6.874 0.336 -0.229 -0.547 0.263 D 10 8 3 11 3 0 27 89 109 -6.611 -1.213 -0.841 IR 11 11 3 11 3 1 32 91 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 82 - a - - MR 12 11 3 14 5 2 32 90 110 -7.306 -0.064 -5.170 -7.333 -8.225 0.244 0.085 -0.776 0.228 D 13 11 3 14 5 0 26 88 109 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 30 90 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 81 u a - - MP 15 14 3 19 6 3 31 89 109 -9.196 -9.135 -0.020 -7.912 -8.192 -8.587 -1.671 -2.170 -2.258 1.389 -2.090 -3.097 1.665 -2.494 -2.309 1.179 -2.864 -0.358 1.921 -2.393 0.042 -0.879 ML 16 14 3 19 6 1 28 87 108 -6.451 -6.797 -1.057 -1.206 -6.647 -4.176 0.722 -0.628 -0.339 -0.131 MR 17 14 3 19 6 1 27 87 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 23 85 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 29 88 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 29 88 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 80 u a - - MP 21 20 6 25 6 3 29 87 107 -9.211 -9.151 -0.020 -7.927 -8.207 -8.602 -1.285 -1.467 -1.880 1.343 -1.858 -2.709 1.456 -1.804 -1.941 1.323 -2.497 -0.019 1.605 -2.009 -0.062 -0.350 ML 22 20 6 25 6 1 27 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 25 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 23 84 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 28 86 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 28 86 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 79 u a - - MP 27 26 6 31 4 2 27 85 105 -7.206 -7.413 -0.075 -4.729 -1.743 -1.899 -1.930 1.394 -1.867 -2.774 1.497 -2.240 -1.277 1.078 -2.556 -0.275 1.806 -1.620 0.268 -0.889 ML 28 26 6 31 4 1 26 85 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 24 84 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 22 83 104 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 27 86 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 26 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 4 - u - - - ML 33 32 6 35 3 1 26 82 102 -8.178 -0.018 -6.832 0.395 -0.295 -0.873 0.404 D 34 32 6 35 3 0 22 81 101 -6.445 -1.958 -0.452 IL 35 35 3 35 3 1 26 84 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 5 - u - - - ML 36 35 3 38 3 1 25 81 101 -8.178 -0.018 -6.832 0.167 -0.540 -0.131 0.352 D 37 35 3 38 3 0 21 80 100 -6.445 -1.223 -0.836 IL 38 38 3 38 3 1 25 83 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 6 - u - - - ML 39 38 3 41 3 1 24 80 100 -8.205 -0.017 -6.859 0.266 -0.374 -0.943 0.590 D 40 38 3 41 3 0 20 79 99 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 24 82 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 7 - u - - - ML 42 41 3 44 3 1 23 79 99 -8.205 -0.017 -6.859 -0.117 0.352 -1.273 0.472 D 43 41 3 44 3 0 20 78 98 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 23 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 8 - u - - - ML 45 44 3 47 3 1 22 78 98 -8.205 -0.017 -6.859 0.077 -0.273 -0.989 0.691 D 46 44 3 47 3 0 19 77 97 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 22 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 9 - u - - - ML 48 47 3 50 3 1 21 77 97 -8.205 -0.325 -2.333 0.345 -0.249 -0.696 0.346 D 49 47 3 50 3 0 18 76 96 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 22 79 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - a - - - ML 51 50 3 53 3 1 22 76 96 -5.169 -0.057 -6.555 0.435 0.059 -0.989 0.140 D 52 50 3 53 3 0 18 74 94 -7.795 -3.308 -0.161 IL 53 53 3 53 3 1 22 78 98 -1.393 -0.816 -4.286 0.000 0.000 0.000 0.000 [ MATL 15 ] 13 - a - - - ML 54 53 3 56 3 1 21 75 95 -7.901 -0.022 -6.555 0.856 -0.726 -0.249 -0.427 D 55 53 3 56 3 0 17 74 93 -7.795 -0.366 -2.186 IL 56 56 3 56 3 1 20 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - U - - - ML 57 56 3 59 3 1 20 74 93 -8.205 -0.017 -6.859 -0.680 -1.219 -1.770 1.408 D 58 56 3 59 3 0 15 73 92 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 19 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - G - - - ML 60 59 3 62 3 1 19 73 92 -8.205 -0.017 -6.859 -0.499 -1.188 1.243 -1.041 D 61 59 3 62 3 0 14 72 91 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 19 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - A - - - ML 63 62 3 65 3 1 19 72 91 -8.205 -0.017 -6.859 1.583 -1.542 -1.759 -1.453 D 64 62 3 65 3 0 13 71 90 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 18 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - U - - - ML 66 65 3 68 3 1 18 71 90 -8.205 -0.017 -6.859 -0.800 -1.106 -0.789 1.253 D 67 65 3 68 3 0 13 69 89 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 17 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - G - - - ML 69 68 3 71 3 1 17 70 89 -8.205 -0.017 -6.859 -2.086 -3.378 1.816 -2.765 D 70 68 3 71 3 0 12 68 88 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 16 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - A - - - ML 72 71 3 74 3 1 16 69 88 -8.205 -0.017 -6.859 1.610 -1.980 -1.854 -1.258 D 73 71 3 74 3 0 11 67 87 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 15 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - a - - - ML 75 74 3 77 3 1 15 68 87 -8.205 -0.017 -6.859 0.839 -1.030 -1.184 0.357 D 76 74 3 77 3 0 10 66 86 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 15 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - U - - - ML 78 77 3 80 3 1 14 67 86 -8.205 -0.017 -6.859 -1.245 -0.699 -1.991 1.439 D 79 77 3 80 3 0 10 65 85 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 14 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - G - - - ML 81 80 3 83 3 1 14 66 85 -8.205 -0.017 -6.859 -1.426 -2.454 1.631 -1.525 D 82 80 3 83 3 0 9 64 84 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 13 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - A - - - ML 84 83 3 86 3 1 13 65 84 -5.436 -0.046 -6.859 1.806 -2.860 -2.444 -2.452 D 85 83 3 86 3 0 8 63 82 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 12 66 85 -1.518 -0.744 -4.218 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - U - - - ML 87 86 3 89 3 1 12 63 82 -8.205 -0.017 -6.859 -0.516 -1.163 -1.673 1.345 D 88 86 3 89 3 0 8 62 81 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 11 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 26 - U - - - ML 90 89 3 92 3 1 11 62 81 -5.228 -0.052 -6.859 -0.767 -0.905 -0.908 1.230 D 91 89 3 92 3 0 7 61 79 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 11 64 83 -1.531 -0.735 -4.231 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - u - - - ML 93 92 3 95 3 1 10 61 80 -5.489 -0.045 -6.859 -0.512 -0.813 -0.250 0.917 D 94 92 3 95 3 0 6 59 78 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 10 63 82 -1.515 -0.746 -4.215 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - a - - - ML 96 95 3 98 3 1 9 60 78 -8.205 -0.017 -6.859 0.959 -0.867 -0.541 -0.286 D 97 95 3 98 3 0 5 58 77 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 9 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - G - - - ML 99 98 3 101 3 1 8 59 77 -4.090 -0.101 -6.859 -0.630 -2.332 1.516 -1.760 D 100 98 3 101 3 0 5 57 75 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 8 60 78 -1.646 -0.664 -4.346 0.000 0.000 0.000 0.000 [ MATL 31 ] 33 - C - - - ML 102 101 3 104 3 1 7 57 76 -8.205 -0.017 -6.859 -2.333 1.751 -3.164 -1.630 D 103 101 3 104 3 0 4 56 75 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 7 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - a - - - ML 105 104 3 107 3 1 6 56 74 -8.581 -0.195 -3.011 0.995 -1.342 -0.046 -0.634 D 106 104 3 107 3 0 3 55 73 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 7 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 78 - a - - MR 108 107 3 110 3 1 7 55 74 -2.003 -0.432 -6.721 0.633 -0.262 -1.011 0.163 D 109 107 3 110 3 0 2 52 71 -7.479 -0.539 -1.709 IR 110 110 3 110 3 1 6 55 74 -1.671 -0.596 -5.358 0.000 0.000 0.000 0.000 [ MATR 34 ] - 74 - A - - MR 111 110 3 113 3 1 6 53 71 -8.581 -0.016 -6.899 1.806 -2.860 -2.444 -2.452 D 112 110 3 113 3 0 0 51 70 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 5 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 73 - G - - MR 114 113 3 116 3 1 5 52 70 -8.581 -0.016 -6.899 -2.086 -3.378 1.816 -2.765 D 115 113 3 116 3 0 0 50 69 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 4 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 72 - U - - MR 117 116 3 119 3 1 5 51 69 -8.581 -0.016 -6.899 -1.942 -1.860 -2.695 1.727 D 118 116 3 119 3 0 0 49 68 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 3 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 71 - C - - MR 120 119 3 122 3 1 4 50 68 -8.581 -0.016 -6.899 -2.333 1.751 -3.164 -1.630 D 121 119 3 122 3 0 0 48 67 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 2 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 70 - a - - MR 123 122 3 125 3 1 4 49 67 -8.581 -0.016 -6.899 0.897 -0.649 -0.457 -0.374 D 124 122 3 125 3 0 0 47 66 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 2 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 69 - g - - MR 126 125 3 128 3 1 3 48 66 -8.581 -0.016 -6.899 -0.018 -1.110 0.622 0.015 D 127 125 3 128 3 0 0 46 65 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 68 - A - - MR 129 128 3 131 3 1 3 47 65 -8.581 -0.016 -6.899 1.806 -2.860 -2.444 -2.452 D 130 128 3 131 3 0 0 45 64 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 67 - A - - MR 132 131 3 134 3 1 2 46 64 -8.581 -0.016 -6.899 1.806 -2.860 -2.444 -2.452 D 133 131 3 134 3 0 0 44 63 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 66 - C - - MR 135 134 3 137 3 1 2 45 63 -8.581 -0.016 -6.899 -2.333 1.751 -3.164 -1.630 D 136 134 3 137 3 0 0 43 62 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 65 - C - - MR 138 137 3 140 3 1 2 44 62 -8.581 -0.016 -6.899 -2.333 1.751 -3.164 -1.630 D 139 137 3 140 3 0 0 42 61 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 64 - C - - MR 141 140 3 143 3 1 1 43 61 -8.581 -0.016 -6.899 -2.333 1.751 -3.164 -1.630 D 142 140 3 143 3 0 0 41 60 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 63 - A - - MR 144 143 3 146 3 1 1 42 60 -8.581 -0.016 -6.899 1.806 -2.860 -2.444 -2.452 D 145 143 3 146 3 0 0 40 59 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 62 - C - - MR 147 146 3 149 3 1 1 41 59 -8.581 -0.016 -6.899 -1.419 1.496 -1.775 -0.960 D 148 146 3 149 3 0 0 39 58 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 61 - U - - MR 150 149 3 152 3 1 1 40 58 -8.581 -0.016 -6.899 -1.942 -1.860 -2.695 1.727 D 151 149 3 152 3 0 0 38 57 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 60 - A - - MR 153 152 3 155 3 1 1 39 57 -8.581 -0.016 -6.899 1.625 -2.181 -1.334 -1.741 D 154 152 3 155 3 0 0 37 56 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 59 - C - - MR 156 155 3 158 3 1 1 38 56 -8.581 -0.016 -6.899 -2.333 1.751 -3.164 -1.630 D 157 155 3 158 3 0 0 36 55 -6.390 -1.568 -0.620 IR 158 158 3 158 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 58 - U - - MR 159 158 3 161 3 1 1 37 55 -8.581 -0.016 -6.899 -1.942 -1.860 -2.695 1.727 D 160 158 3 161 3 0 0 35 54 -6.390 -1.568 -0.620 IR 161 161 3 161 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 57 - U - - MR 162 161 3 164 3 1 1 36 54 -8.581 -0.016 -6.899 -1.942 -1.860 -2.695 1.727 D 163 161 3 164 3 0 0 34 53 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 52 ] - 56 - A - - MR 165 164 3 167 3 1 1 35 53 -8.581 -0.016 -6.899 1.806 -2.860 -2.444 -2.452 D 166 164 3 167 3 0 0 33 52 -6.390 -1.568 -0.620 IR 167 167 3 167 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 53 ] - 55 - U - - MR 168 167 3 170 3 1 1 34 52 -8.581 -0.016 -6.899 -1.052 -1.361 -1.998 1.525 D 169 167 3 170 3 0 0 32 51 -6.390 -1.568 -0.620 IR 170 170 3 170 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 54 ] - 54 - A - - MR 171 170 3 173 3 1 1 32 51 -8.581 -0.016 -6.899 1.806 -2.860 -2.444 -2.452 D 172 170 3 173 3 0 0 31 50 -6.390 -1.568 -0.620 IR 173 173 3 173 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 55 ] - 53 - U - - MR 174 173 3 176 3 1 1 31 50 -8.581 -0.016 -6.899 -0.801 -0.956 -1.745 1.385 D 175 173 3 176 3 0 0 30 49 -6.390 -1.568 -0.620 IR 176 176 3 176 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 56 ] - 52 - C - - MR 177 176 3 179 3 1 1 30 49 -8.581 -0.016 -6.899 -2.333 1.751 -3.164 -1.630 D 178 176 3 179 3 0 0 29 48 -6.390 -1.568 -0.620 IR 179 179 3 179 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 57 ] - 51 - A - - MR 180 179 3 182 3 1 1 29 48 -8.581 -0.016 -6.899 1.806 -2.860 -2.444 -2.452 D 181 179 3 182 3 0 0 28 46 -6.390 -1.568 -0.620 IR 182 182 3 182 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 58 ] - 50 - G - - MR 183 182 3 185 3 1 1 28 47 -8.581 -0.016 -6.899 -2.086 -3.378 1.816 -2.765 D 184 182 3 185 3 0 0 27 45 -6.390 -1.568 -0.620 IR 185 185 3 185 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 59 ] - 49 - A - - MR 186 185 3 188 3 1 1 27 46 -8.581 -0.016 -6.899 1.658 -2.134 -1.961 -1.473 D 187 185 3 188 3 0 0 26 44 -6.390 -1.568 -0.620 IR 188 188 3 188 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 60 ] - 48 - A - - MR 189 188 3 191 3 1 1 26 45 -8.581 -0.016 -6.899 1.806 -2.860 -2.444 -2.452 D 190 188 3 191 3 0 0 25 43 -6.390 -1.568 -0.620 IR 191 191 3 191 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 61 ] - 47 - G - - MR 192 191 3 194 3 1 1 25 44 -8.581 -0.016 -6.899 -1.137 -2.695 1.660 -2.117 D 193 191 3 194 3 0 0 24 42 -6.390 -1.568 -0.620 IR 194 194 3 194 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 62 ] - 46 - U - - MR 195 194 3 197 3 1 1 24 43 -8.581 -0.016 -6.899 -1.942 -1.860 -2.695 1.727 D 196 194 3 197 3 0 0 23 42 -6.390 -1.568 -0.620 IR 197 197 3 197 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 63 ] - 45 - U - - MR 198 197 3 200 5 1 1 23 42 -4.014 -0.118 -7.121 -7.333 -8.225 -1.942 -1.860 -2.695 1.727 D 199 197 3 200 5 0 0 22 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 200 200 3 200 5 1 1 24 42 -2.648 -0.408 -6.159 -4.327 -5.433 0.000 0.000 0.000 0.000 [ MATP 64 ] 35 43 G C - - MP 201 200 3 205 6 2 2 22 41 -9.211 -9.151 -0.020 -7.927 -8.207 -8.602 -5.214 -3.323 -5.373 -0.124 -5.895 -4.873 -1.141 -5.638 -4.622 3.733 -4.928 -1.044 -1.515 -4.774 -3.206 -4.243 ML 202 200 3 205 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 203 200 3 205 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 204 200 3 205 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 205 205 5 205 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 206 206 6 206 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 65 ] 36 42 A U - - MP 207 206 6 211 6 2 2 20 39 -9.211 -9.151 -0.020 -7.927 -8.207 -8.602 -4.244 -3.168 -4.220 3.560 -4.797 -5.912 -0.466 -4.231 -4.103 0.588 -4.673 -0.578 -0.881 -5.017 -2.405 -3.034 ML 208 206 6 211 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 209 206 6 211 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 210 206 6 211 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 211 211 5 211 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 212 212 6 212 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 66 ] 37 41 A U - - MP 213 212 6 217 4 2 2 18 37 -7.206 -7.413 -0.044 -5.827 -4.244 -3.168 -4.220 3.560 -4.797 -5.912 -0.466 -4.231 -4.103 0.588 -4.673 -0.578 -0.881 -5.017 -2.405 -3.034 ML 214 212 6 217 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 215 212 6 217 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 216 212 6 217 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 217 217 5 217 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 218 218 6 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 38 - G - - - ML 219 218 6 221 3 1 1 15 33 -8.205 -0.017 -6.859 -2.086 -3.378 1.816 -2.765 D 220 218 6 221 3 0 0 15 33 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 39 - A - - - ML 222 221 3 224 3 1 1 13 31 -8.205 -0.017 -6.859 1.806 -2.860 -2.444 -2.452 D 223 221 3 224 3 0 0 13 32 -6.174 -1.687 -0.566 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 40 - G - - - ML 225 224 3 227 2 1 1 1 1 * 0.000 -2.086 -3.378 1.816 -2.765 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 70 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME snoCD11 ACC RF00538 DESC Small nucleolar RNA CD11 LENG 75 MAXL 158 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 18:11:00 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00538/CM NSEQ 26 EFFN 2.948486 CKSUM 3973081462 STATS LOCAL MSV -8.6476 0.71870 STATS LOCAL VITERBI -9.1321 0.71870 STATS LOCAL FORWARD -4.0753 0.71870 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15294 1.60601 1.58472 1.27798 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 0.00000 * 1 1.51712 1.48616 1.58194 1.05313 1 u - - < 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 2 1.48274 1.54195 1.41985 1.14800 2 u - - < 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 3 1.51834 1.55080 1.52865 1.04408 3 u - - < 1.38629 1.38629 1.38629 1.38629 0.05506 4.10472 3.29475 1.46634 0.26236 1.09861 0.40547 4 1.10573 1.59145 2.00866 1.10494 4 u - - - 1.38629 1.38629 1.38629 1.38629 0.03426 4.08392 4.08392 1.46634 0.26236 1.44641 0.26842 5 1.27293 1.76979 1.46898 1.14112 5 u - - - 1.38629 1.38629 1.38629 1.38629 0.03426 4.08392 4.08392 1.46634 0.26236 0.63645 0.75326 6 1.19775 1.65031 2.05944 0.97125 6 u - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 7 1.48075 1.12033 2.30964 1.05824 7 u - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 8 1.33509 1.57694 2.09198 0.89939 8 u - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 9 1.14314 1.55752 1.87833 1.14671 9 a - - - 1.38629 1.38629 1.38629 1.38629 0.27447 4.10472 1.49820 1.46634 0.26236 1.09861 0.40547 10 1.07747 1.33151 2.10013 1.29819 10 a - - - 1.38629 1.38629 1.38629 1.38629 0.07034 3.05511 3.87274 1.01183 0.45186 2.74418 0.06646 11 0.77680 1.90166 1.55756 1.71392 13 a - - - 1.38629 1.38629 1.38629 1.38629 0.04249 3.87274 3.87274 1.46634 0.26236 0.13766 2.05103 12 1.90473 2.30027 2.69484 0.38075 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 13 1.77978 2.23951 0.49107 2.18173 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 14 0.26488 2.50289 2.69151 2.48802 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 15 2.00640 2.21306 1.95281 0.48729 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 16 2.97510 3.88765 0.10864 3.46051 18 G - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 17 0.24733 2.84302 2.76109 2.32644 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 18 0.78674 2.14087 2.24838 1.13460 20 a - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 19 2.33630 1.89986 2.85607 0.36207 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 20 2.47830 3.19835 0.22977 2.51870 22 G - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 21 0.11562 3.51192 3.21011 3.24422 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.05602 3.27057 4.10472 0.71836 0.66856 1.09861 0.40547 22 1.78105 2.25746 2.62094 0.42436 25 U - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 23 1.97779 2.05697 2.03738 0.50515 26 U - - - 1.38629 1.38629 1.38629 1.38629 0.06015 3.17281 4.10472 0.66004 0.72739 1.09861 0.40547 24 1.78109 1.98098 1.55357 0.72956 28 u - - - 1.38629 1.38629 1.38629 1.38629 0.05506 3.29475 4.10472 0.73350 0.65436 1.09861 0.40547 25 0.70383 2.00718 1.77280 1.60402 30 a - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 26 1.86745 3.10191 0.30911 2.71178 31 G - - - 1.38629 1.38629 1.38629 1.38629 0.09798 2.56606 4.10472 0.38504 1.14077 1.09861 0.40547 27 3.17583 0.14562 3.74844 2.65646 33 C - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 28 0.67881 2.36535 1.41113 1.86436 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 29 2.75798 3.50666 0.13400 3.44225 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 30 0.24568 3.11408 2.07871 3.02996 36 A - - < 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 31 0.24558 3.11468 2.07884 3.03077 37 A - - < 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 32 2.97510 3.88765 0.10864 3.46051 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 33 0.11562 3.51192 3.21011 3.24422 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 34 2.97510 3.88765 0.10864 3.46051 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 35 3.25086 2.40453 2.92298 0.20190 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 36 3.24934 2.40430 2.92234 0.20204 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 37 3.62444 0.15998 3.34649 2.45378 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.10655 2.47009 4.10472 0.35281 1.21306 1.09861 0.40547 38 2.86877 2.78945 3.39532 0.16458 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 39 2.86877 2.78945 3.39532 0.16458 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 40 2.24615 3.37154 0.21212 2.97608 47 G - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 41 0.11562 3.51192 3.21011 3.24422 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 42 0.21480 2.95767 2.84194 2.48840 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 43 2.97510 3.88765 0.10864 3.46051 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 44 0.11562 3.51192 3.21011 3.24422 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 45 3.17583 0.14562 3.74844 2.65646 52 C - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 46 1.99602 2.09637 2.67156 0.39738 53 U - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 47 0.11562 3.51192 3.21011 3.24422 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 48 2.18498 2.40684 2.86522 0.30050 55 U - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 49 0.11562 3.51192 3.21011 3.24422 56 A - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 50 2.86877 2.78945 3.39532 0.16458 57 U - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 51 2.86877 2.78945 3.39532 0.16458 58 U - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 52 3.17583 0.14562 3.74844 2.65646 59 C - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 53 0.23809 2.99383 2.35630 2.70307 60 A - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 54 2.86877 2.78945 3.39532 0.16458 61 U - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 55 2.49468 0.30960 2.69423 2.15296 62 C - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 56 0.11562 3.51192 3.21011 3.24422 63 A - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 57 3.17583 0.14562 3.74844 2.65646 64 C - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 58 3.17583 0.14562 3.74844 2.65646 65 C - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 59 3.17583 0.14562 3.74844 2.65646 66 C - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 60 0.11562 3.51192 3.21011 3.24422 67 A - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 61 0.11562 3.51192 3.21011 3.24422 68 A - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 62 1.41383 2.19391 0.92911 1.38467 69 g - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 63 0.74772 1.84469 1.71089 1.67251 70 a - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 64 3.17583 0.14562 3.74844 2.65646 71 C - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 65 2.86877 2.78945 3.39532 0.16458 72 U - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 66 2.97510 3.88765 0.10864 3.46051 73 G - - - 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 67 0.11562 3.51192 3.21011 3.24422 74 A - - - 1.38629 1.38629 1.38629 1.38629 0.54177 1.31586 1.89684 0.50226 0.92928 1.09861 0.40547 68 0.93462 1.56586 2.11609 1.28066 78 a - - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96137 3.96137 1.46634 0.26236 0.19874 1.71347 69 1.25516 1.74459 1.28916 1.32896 79 a - - > 1.38629 1.38629 1.38629 1.38629 0.03355 4.10472 4.10472 1.46634 0.26236 1.09861 0.40547 70 1.37537 1.60594 1.36042 1.23787 80 u - - > 1.38629 1.38629 1.38629 1.38629 0.05997 4.10472 3.17688 1.46634 0.26236 1.09861 0.40547 71 1.24001 1.77532 1.26924 1.34652 81 a - - > 1.38629 1.38629 1.38629 1.38629 0.03443 4.07917 4.07917 1.46634 0.26236 0.58267 0.81736 72 1.21655 1.31476 1.93751 1.23393 82 a - - : 1.38629 1.38629 1.38629 1.38629 0.05401 4.10472 3.32189 1.46634 0.26236 1.09861 0.40547 73 1.15010 1.54249 1.77023 1.20647 83 a - - : 1.38629 1.38629 1.38629 1.38629 0.03423 4.08493 4.08493 1.46634 0.26236 1.43214 0.27286 74 1.33119 1.47800 2.22559 0.91694 84 u - - : 1.38629 1.38629 1.38629 1.38629 0.03423 4.08493 4.08493 1.46634 0.26236 1.43214 0.27286 75 1.23904 1.67817 2.03848 0.93294 85 u - - : 1.38629 1.38629 1.38629 1.38629 0.01726 4.06796 * 1.46634 0.26236 0.00000 * //