INFERNAL1/a [1.1.5 | Sep 2023] NAME snoMe28S-Cm2645 ACC RF00530 DESC Small nucleolar RNA Me28S-Cm2645 STATES 229 NODES 74 CLEN 75 W 98 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 06:43:44 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00530/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 2.602539 CKSUM 697981519 NULL 0.000 0.000 0.000 0.000 GA 48.00 TC 48.30 NC 47.20 EFP7GF -9.5245 0.71861 ECMLC 0.63554 -6.14262 2.69055 1600000 329044 0.003647 ECMGC 0.36780 -17.01746 -2.43945 1600000 85241 0.004693 ECMLI 0.63591 -3.27730 4.85155 1600000 210925 0.005689 ECMGI 0.41301 -11.17657 1.35298 1600000 70709 0.005657 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 98 126 -9.209 -9.148 -0.020 -7.925 -8.205 -8.600 IL 1 1 2 1 6 1 32 100 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 32 99 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 85 c g - - MP 3 2 3 7 4 2 32 98 126 -7.200 -7.407 -0.044 -5.821 -2.329 -2.280 -2.474 1.697 -2.306 -3.300 1.707 -2.696 -2.531 1.388 -3.068 -0.260 1.512 -2.598 -0.258 -0.228 ML 4 2 3 7 4 1 30 98 126 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 4 1 28 97 125 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 6 2 3 7 4 0 27 96 124 -4.568 -4.250 -2.265 -0.520 IL 7 7 5 7 4 1 31 99 127 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 8 8 6 8 3 1 31 98 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 9 8 6 11 3 1 30 96 124 -8.576 -0.016 -6.894 -0.230 -0.042 -1.303 0.824 D 10 8 6 11 3 0 26 95 123 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 29 96 125 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 84 - U - - MR 12 11 3 14 5 1 29 95 123 -7.301 -0.034 -7.117 -7.329 -8.220 -0.488 -0.859 -1.559 1.261 D 13 11 3 14 5 0 24 94 122 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 28 95 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 83 u a - - MP 15 14 3 19 6 2 28 94 122 -9.209 -9.148 -0.110 -3.967 -8.205 -8.600 -1.631 -1.348 -1.829 1.453 -1.820 -2.651 1.396 -1.617 -1.886 1.221 -2.440 -0.091 1.467 -1.320 -0.047 0.012 ML 16 14 3 19 6 1 26 92 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 24 92 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 21 90 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 27 93 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 26 93 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 82 a u - - MP 21 20 6 25 4 2 27 92 120 -6.981 -2.809 -0.271 -5.602 -1.868 -1.915 -2.045 1.562 -1.990 -2.867 1.488 -2.348 -1.278 1.440 -2.652 -0.152 1.434 -2.168 0.059 -0.464 ML 22 20 6 25 4 1 25 91 119 -4.468 -4.650 -0.288 -3.380 -0.436 -0.656 -1.084 1.107 MR 23 20 6 25 4 1 22 90 119 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 21 89 118 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 26 92 120 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 25 91 120 -1.820 -0.571 -4.520 0.000 0.000 0.000 0.000 [ MATL 6 ] 5 - u - - - ML 27 26 6 29 3 1 25 90 118 -8.200 -0.017 -6.854 -0.108 -0.298 -0.804 0.754 D 28 26 6 29 3 0 20 88 116 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 24 91 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - u - - - ML 30 29 3 32 3 1 24 89 117 -8.200 -0.017 -6.854 -0.240 -0.306 -0.938 0.866 D 31 29 3 32 3 0 19 87 115 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 23 90 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - a - - - ML 33 32 3 35 3 1 23 88 116 -8.200 -0.017 -6.854 0.784 -0.779 -0.136 -0.349 D 34 32 3 35 3 0 18 86 114 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 23 89 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 36 35 3 38 3 1 22 87 115 -8.200 -0.017 -6.854 -1.932 -1.852 -2.685 1.725 D 37 35 3 38 3 0 18 85 113 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 22 88 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 39 38 3 41 3 1 21 86 114 -8.200 -0.017 -6.854 -2.076 -3.366 1.815 -2.753 D 40 38 3 41 3 0 17 84 112 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 21 87 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - A - - - ML 42 41 3 44 3 1 20 85 113 -8.200 -0.017 -6.854 1.804 -2.850 -2.435 -2.441 D 43 41 3 44 3 0 16 83 111 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 20 86 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - U - - - ML 45 44 3 47 3 1 20 84 112 -8.200 -0.147 -3.416 -1.932 -1.852 -2.685 1.725 D 46 44 3 47 3 0 16 82 110 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 20 85 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - G - - - ML 48 47 3 50 3 1 20 83 111 -8.072 -0.019 -6.726 -1.809 -3.064 1.771 -2.451 D 49 47 3 50 3 0 15 80 108 -7.120 -2.633 -0.266 IL 50 50 3 50 3 1 19 84 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 51 50 3 53 3 1 19 82 110 -8.072 -0.019 -6.726 1.762 -2.590 -2.200 -2.154 D 52 50 3 53 3 0 14 79 108 -7.120 -2.633 -0.266 IL 53 53 3 53 3 1 19 83 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - a - - - ML 54 53 3 56 3 1 18 81 109 -8.072 -0.019 -6.726 0.832 -0.970 -1.113 0.319 D 55 53 3 56 3 0 14 79 107 -7.120 -2.633 -0.266 IL 56 56 3 56 3 1 18 82 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 57 56 3 59 3 1 17 80 108 -8.072 -0.109 -3.854 1.284 -1.323 -1.336 -0.378 D 58 56 3 59 3 0 14 78 106 -7.120 -1.295 -0.773 IL 59 59 3 59 3 1 17 81 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - a - - - ML 60 59 3 62 3 1 17 79 107 -8.054 -0.019 -6.708 0.635 -0.860 -0.690 0.352 D 61 59 3 62 3 0 13 77 106 -7.207 -0.593 -1.599 IL 62 62 3 62 3 1 16 80 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - c - - - ML 63 62 3 65 3 1 16 78 106 -8.200 -0.017 -6.854 -0.224 0.989 -1.567 -0.284 D 64 62 3 65 3 0 11 76 104 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 15 79 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - u - - - ML 66 65 3 68 3 1 15 77 105 -8.200 -0.017 -6.854 -0.345 -0.078 0.031 0.314 D 67 65 3 68 3 0 10 75 103 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 14 78 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - U - - - ML 69 68 3 71 3 1 14 76 104 -8.200 -0.017 -6.854 -0.684 -1.217 -1.768 1.408 D 70 68 3 71 3 0 9 74 102 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 14 77 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - U - - - ML 72 71 3 74 3 1 13 75 103 -8.200 -0.078 -4.336 -0.148 -1.049 -1.459 1.170 D 73 71 3 74 3 0 9 73 101 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 13 76 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - a - - - ML 75 74 3 77 3 1 13 74 102 -8.140 -0.018 -6.794 0.744 -0.968 -1.139 0.444 D 76 74 3 77 3 0 8 72 100 -6.705 -0.935 -1.097 IL 77 77 3 77 3 1 12 75 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - - - ML 78 77 3 80 3 1 12 73 101 -8.200 -0.017 -6.854 -2.076 -3.366 1.815 -2.753 D 79 77 3 80 3 0 6 71 99 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 11 74 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - A - - - ML 81 80 3 83 3 1 12 72 100 -8.200 -0.017 -6.854 1.804 -2.850 -2.435 -2.441 D 82 80 3 83 3 0 6 70 98 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 10 73 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - - - ML 84 83 3 86 3 1 11 71 99 -8.200 -0.017 -6.854 -1.932 -1.852 -2.685 1.725 D 85 83 3 86 3 0 5 69 97 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 10 72 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - A - - - ML 87 86 3 89 3 1 10 70 98 -8.200 -0.017 -6.854 1.397 -1.809 -0.562 -1.308 D 88 86 3 89 3 0 4 68 96 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 9 71 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 26 - G - - - ML 90 89 3 92 3 1 10 69 97 -8.200 -0.017 -6.854 -2.076 -3.366 1.815 -2.753 D 91 89 3 92 3 0 3 67 95 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 8 70 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 27 - G - - - ML 93 92 3 95 3 1 9 68 96 -8.200 -0.017 -6.854 -2.076 -3.366 1.815 -2.753 D 94 92 3 95 3 0 3 66 94 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 7 69 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - G - - - ML 96 95 3 98 3 1 8 67 95 -8.200 -0.017 -6.854 -1.060 -2.634 1.641 -2.057 D 97 95 3 98 3 0 2 65 93 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 7 68 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - A - - - ML 99 98 3 101 3 1 8 66 94 -8.200 -0.017 -6.854 1.589 -1.920 -1.809 -1.176 D 100 98 3 101 3 0 1 64 92 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 6 67 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - C - - - ML 102 101 3 104 3 1 7 65 93 -8.200 -0.017 -6.854 -2.321 1.749 -3.152 -1.620 D 103 101 3 104 3 0 0 63 91 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 5 66 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - A - - - ML 105 104 3 107 3 1 6 64 92 -8.200 -0.017 -6.854 1.160 -1.239 -0.821 -0.365 D 106 104 3 107 3 0 0 62 90 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 5 65 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 32 - u - - - ML 108 107 3 110 3 1 6 63 91 -8.200 -0.017 -6.854 0.273 -0.965 -1.259 0.897 D 109 107 3 110 3 0 0 61 89 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 4 64 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 33 - C - - - ML 111 110 3 113 3 1 5 62 90 -8.200 -0.017 -6.854 -2.321 1.749 -3.152 -1.620 D 112 110 3 113 3 0 0 60 88 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 3 63 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - U - - - ML 114 113 3 116 3 1 4 61 89 -8.200 -0.017 -6.854 -1.932 -1.852 -2.685 1.725 D 115 113 3 116 3 0 0 59 87 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 3 62 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - G - - - ML 117 116 3 119 3 1 4 60 88 -8.200 -0.017 -6.854 -2.076 -3.366 1.815 -2.753 D 118 116 3 119 3 0 0 58 86 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 2 61 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - A - - - ML 120 119 3 122 3 1 3 59 87 -8.200 -0.017 -6.854 1.804 -2.850 -2.435 -2.441 D 121 119 3 122 3 0 0 57 85 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 2 60 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - U - - - ML 123 122 3 125 3 1 3 58 86 -8.200 -0.017 -6.854 -1.932 -1.852 -2.685 1.725 D 124 122 3 125 3 0 0 56 84 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 59 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - G - - - ML 126 125 3 128 3 1 3 57 85 -8.200 -0.017 -6.854 -0.499 -1.671 1.261 -0.780 D 127 125 3 128 3 0 0 55 83 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 58 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - U - - - ML 129 128 3 131 3 1 2 56 84 -8.200 -0.017 -6.854 -0.582 -0.784 -1.590 1.274 D 130 128 3 131 3 0 0 54 82 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 57 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - C - - - ML 132 131 3 134 3 1 2 55 83 -8.200 -0.017 -6.854 -2.321 1.749 -3.152 -1.620 D 133 131 3 134 3 0 0 53 81 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 56 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 41 - U - - - ML 135 134 3 137 3 1 2 54 82 -8.200 -0.017 -6.854 -1.290 -0.808 -2.035 1.473 D 136 134 3 137 3 0 0 52 80 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 55 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 42 - A - - - ML 138 137 3 140 3 1 1 53 81 -8.200 -0.017 -6.854 1.113 -1.631 0.057 -1.079 D 139 137 3 140 3 0 0 51 79 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 54 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 43 - U - - - ML 141 140 3 143 3 1 1 52 80 -8.200 -0.017 -6.854 -1.932 -1.852 -2.685 1.725 D 142 140 3 143 3 0 0 50 78 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 53 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 44 - G - - - ML 144 143 3 146 3 1 1 51 79 -8.200 -0.017 -6.854 -2.076 -3.366 1.815 -2.753 D 145 143 3 146 3 0 0 49 77 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 52 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 45 - A - - - ML 147 146 3 149 3 1 1 50 78 -8.200 -0.017 -6.854 1.563 -1.466 -1.721 -1.395 D 148 146 3 149 3 0 0 48 76 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 51 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 46 - C - - - ML 150 149 3 152 3 1 1 49 77 -8.200 -0.017 -6.854 -1.319 1.321 -2.168 -0.187 D 151 149 3 152 3 0 0 47 75 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 50 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 47 - U - - - ML 153 152 3 155 3 1 1 48 76 -8.200 -0.017 -6.854 -1.932 -1.852 -2.685 1.725 D 154 152 3 155 3 0 0 46 74 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 49 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 48 - G - - - ML 156 155 3 158 3 1 1 47 75 -8.200 -0.017 -6.854 -2.076 -3.366 1.815 -2.753 D 157 155 3 158 3 0 0 45 73 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 48 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 49 - A - - - ML 159 158 3 161 3 1 1 46 74 -8.200 -0.017 -6.854 1.804 -2.850 -2.435 -2.441 D 160 158 3 161 3 0 0 44 72 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 47 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 50 - U - - - ML 162 161 3 164 3 1 1 45 73 -8.200 -0.017 -6.854 -1.932 -1.852 -2.685 1.725 D 163 161 3 164 3 0 0 43 71 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 46 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 51 - U - - - ML 165 164 3 167 3 1 1 44 72 -8.200 -0.017 -6.854 -0.815 -0.824 -1.721 1.358 D 166 164 3 167 3 0 0 42 70 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 45 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 52 - U - - - ML 168 167 3 170 3 1 1 43 71 -8.200 -0.017 -6.854 -1.142 -0.474 -1.894 1.355 D 169 167 3 170 3 0 0 41 69 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 44 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 53 - A - - - ML 171 170 3 173 3 1 1 42 70 -8.200 -0.017 -6.854 1.804 -2.850 -2.435 -2.441 D 172 170 3 173 3 0 0 40 68 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 43 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - U - - - ML 174 173 3 176 3 1 1 41 69 -8.200 -0.017 -6.854 -1.932 -1.852 -2.685 1.725 D 175 173 3 176 3 0 0 38 66 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 42 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - C - - - ML 177 176 3 179 3 1 1 40 68 -2.989 -0.209 -6.854 -2.321 1.749 -3.152 -1.620 D 178 176 3 179 3 0 0 35 63 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 42 70 -0.939 -1.151 -5.158 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - U - - - ML 180 179 3 182 3 1 1 33 57 -4.979 -0.059 -6.854 0.094 -0.992 -1.335 1.024 D 181 179 3 182 3 0 0 31 55 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 36 60 -1.125 -1.005 -4.531 0.000 0.000 0.000 0.000 [ MATL 58 ] 65 - U - - - ML 183 182 3 185 3 1 1 29 48 -8.200 -0.017 -6.854 -1.007 -0.102 -1.772 1.188 D 184 182 3 185 3 0 0 28 47 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 66 - G - - - ML 186 185 3 188 3 1 1 28 47 -8.200 -0.017 -6.854 -1.381 -2.394 1.613 -1.450 D 187 185 3 188 3 0 0 27 46 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 67 - A - - - ML 189 188 3 191 3 1 1 27 46 -8.200 -0.017 -6.854 1.354 -1.495 -0.980 -0.780 D 190 188 3 191 3 0 0 26 45 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - U - - - ML 192 191 3 194 3 1 1 26 45 -8.200 -0.017 -6.854 -0.879 -1.288 -1.886 1.473 D 193 191 3 194 3 0 0 25 44 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - A - - - ML 195 194 3 197 3 1 1 25 44 -8.200 -0.017 -6.854 1.149 -0.894 -1.259 -0.274 D 196 194 3 197 3 0 0 24 43 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 70 - G - - - ML 198 197 3 200 3 1 1 24 42 -8.200 -0.017 -6.854 -0.650 -1.846 1.370 -0.999 D 199 197 3 200 3 0 0 23 42 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 71 - U - - - ML 201 200 3 203 3 1 1 23 41 -8.200 -0.017 -6.854 -0.848 -1.276 -1.868 1.463 D 202 200 3 203 3 0 0 22 40 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 72 - A - - - ML 204 203 3 206 3 1 1 21 40 -8.200 -0.017 -6.854 1.804 -2.850 -2.435 -2.441 D 205 203 3 206 3 0 0 21 39 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 73 - G - - - ML 207 206 3 209 3 1 1 20 39 -8.200 -0.017 -6.854 -1.119 -1.670 1.528 -1.548 D 208 206 3 209 3 0 0 19 38 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 74 - A - - - ML 210 209 3 212 3 1 1 19 37 -4.412 -0.083 -6.854 1.804 -2.850 -2.435 -2.441 D 211 209 3 212 3 0 0 17 36 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 21 39 -1.604 -0.689 -4.304 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - u - - - ML 213 212 3 215 3 1 1 17 36 -8.200 -0.017 -6.854 0.361 -0.887 -0.909 0.716 D 214 212 3 215 3 0 0 17 36 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 77 - C - - - ML 216 215 3 218 3 1 1 16 35 -8.200 -0.017 -6.854 -2.321 1.749 -3.152 -1.620 D 217 215 3 218 3 0 0 16 34 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 78 - U - - - ML 219 218 3 221 3 1 1 15 33 -8.200 -0.017 -6.854 -1.932 -1.852 -2.685 1.725 D 220 218 3 221 3 0 0 15 33 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 79 - G - - - ML 222 221 3 224 3 1 1 13 31 -8.200 -0.017 -6.854 -2.076 -3.366 1.815 -2.753 D 223 221 3 224 3 0 0 13 32 -6.174 -1.687 -0.566 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 80 - A - - - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.804 -2.850 -2.435 -2.441 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 73 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME snoMe28S-Cm2645 ACC RF00530 DESC Small nucleolar RNA Me28S-Cm2645 LENG 75 MAXL 160 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 06:43:44 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00530/CM NSEQ 20 EFFN 2.778320 CKSUM 697981519 STATS LOCAL MSV -8.9991 0.71861 STATS LOCAL VITERBI -9.2711 0.71861 STATS LOCAL FORWARD -3.8005 0.71861 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.25967 1.78698 1.45718 1.15234 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 0.00000 * 1 1.41937 1.46078 1.46853 1.21802 1 u - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 2 1.55489 1.41102 2.31121 0.80800 2 u - - - 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 3 1.44766 1.55446 1.46763 1.12978 3 u - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 4 1.46451 1.57666 1.38921 1.16196 4 u - - < 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 5 1.46648 1.59382 1.94956 0.85854 5 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 6 1.56160 1.59998 2.04533 0.77879 6 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 7 0.83586 1.93394 1.47820 1.64055 7 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 8 2.79957 2.73167 3.32393 0.17669 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 9 2.90343 3.80752 0.11769 3.38158 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 10 0.12489 3.43967 3.14452 3.16441 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 11 2.79957 2.73167 3.32393 0.17669 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.13434 4.09334 2.21618 1.46634 0.26236 1.09861 0.40547 12 2.71615 3.59619 0.14559 3.17167 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 2.14416 0.12462 13 0.15238 3.25469 2.97725 2.96013 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 2.14416 0.12462 14 0.80022 2.07764 2.17825 1.16377 14 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 2.14416 0.12462 15 0.48292 2.33089 2.34312 1.66185 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.10775 3.99645 2.47974 1.46634 0.26236 0.79957 0.59696 16 0.93951 1.99709 1.87222 1.14047 16 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03797 3.98312 3.98312 1.46634 0.26236 0.24346 1.53207 17 1.55467 0.68161 2.50864 1.60166 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 18 1.64069 1.43488 1.35604 1.17012 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 19 1.88608 2.26672 2.65621 0.39383 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 20 1.49830 2.14249 2.42971 0.56025 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08094 4.09334 2.79574 1.46634 0.26236 1.09861 0.40547 21 0.86238 2.07687 2.19612 1.07502 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03554 4.04793 4.04793 1.46634 0.26236 0.43592 1.04036 22 2.90343 3.80752 0.11769 3.38158 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 23 0.12489 3.43967 3.14452 3.16441 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 24 2.79957 2.73167 3.32393 0.17669 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 25 0.40505 2.68332 1.78052 2.34162 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 26 2.90343 3.80752 0.11769 3.38158 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 27 2.90343 3.80752 0.11769 3.38158 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 28 2.15850 3.27499 0.23517 2.87791 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 29 0.27196 2.76121 2.68752 2.23634 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 30 3.08895 0.15847 3.66368 2.58538 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 31 0.57109 2.26864 1.96835 1.65052 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 32 1.19622 2.07840 2.28269 0.75390 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 33 3.08895 0.15847 3.66368 2.58538 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 34 2.79957 2.73167 3.32393 0.17669 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 35 2.90343 3.80752 0.11769 3.38158 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 36 0.12489 3.43967 3.14452 3.16441 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 37 2.79957 2.73167 3.32393 0.17669 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 38 1.75441 2.57958 0.49590 1.95081 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 39 1.81137 1.94867 2.52309 0.48793 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 40 3.08895 0.15847 3.66368 2.58538 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 41 2.32925 1.96572 2.84651 0.35022 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 42 0.60265 2.55674 1.34039 2.17738 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 43 2.79957 2.73167 3.32393 0.17669 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 44 2.90343 3.80752 0.11769 3.38158 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 45 0.28930 2.42687 2.62467 2.40310 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 46 2.35181 0.45203 2.94487 1.53311 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 47 2.79957 2.73167 3.32393 0.17669 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 48 2.90343 3.80752 0.11769 3.38158 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 49 0.12489 3.43967 3.14452 3.16441 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 50 2.79957 2.73167 3.32393 0.17669 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 51 1.98202 1.97832 2.61903 0.42919 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 52 2.22176 1.72396 2.74448 0.43241 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 53 0.12489 3.43967 3.14452 3.16441 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 54 2.79957 2.73167 3.32393 0.17669 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 55 3.08895 0.15847 3.66368 2.58538 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.18211 1.89841 4.09334 1.14394 0.38355 1.09861 0.40547 56 1.32402 2.09963 2.33864 0.66364 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06627 3.04839 4.09334 1.40655 0.28102 1.09861 0.40547 57 2.12311 1.45618 2.65563 0.54998 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 58 2.39885 3.10507 0.25298 2.43186 66 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 59 0.43561 2.45206 2.08222 1.94940 67 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 60 2.02771 2.31853 2.74161 0.34888 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 61 0.57719 2.01933 2.28657 1.58882 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 62 1.86273 2.70471 0.42115 2.10727 70 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 63 2.00560 2.31016 2.72815 0.35548 71 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 64 0.12489 3.43967 3.14452 3.16441 72 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 65 2.21189 2.57203 0.31009 2.51646 73 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 66 0.12489 3.43967 3.14452 3.16441 74 A - - _ 1.38629 1.38629 1.38629 1.38629 0.08413 2.74875 4.09334 0.45867 1.00001 1.09861 0.40547 67 1.13322 2.01924 2.02770 0.88283 76 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 68 3.08895 0.15847 3.66368 2.58538 77 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 69 2.79957 2.73167 3.32393 0.17669 78 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 70 2.90343 3.80752 0.11769 3.38158 79 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 71 0.12489 3.43967 3.14452 3.16441 80 A - - _ 1.38629 1.38629 1.38629 1.38629 0.35152 1.99784 1.82787 0.23012 1.58201 1.09861 0.40547 72 1.47318 1.57960 1.33150 1.20176 82 u - - > 1.38629 1.38629 1.38629 1.38629 0.03976 3.93777 3.93777 1.46634 0.26236 0.18861 1.76092 73 1.47594 1.59153 1.37722 1.15346 83 u - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 74 1.74341 2.00312 2.50082 0.49734 84 U - - - 1.38629 1.38629 1.38629 1.38629 0.03394 4.09334 4.09334 1.46634 0.26236 1.09861 0.40547 75 1.53718 1.66340 1.29417 1.13509 85 u - - > 1.38629 1.38629 1.38629 1.38629 0.01711 4.07651 * 1.46634 0.26236 0.00000 * //