INFERNAL1/a [1.1.4 | Dec 2020] NAME snoMe28S-Cm2645 ACC RF00530 DESC Small nucleolar RNA Me28S-Cm2645 STATES 229 NODES 74 CLEN 75 W 99 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:44:44 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 2.583008 CKSUM 697981519 NULL 0.000 0.000 0.000 0.000 GA 48.00 TC 48.60 NC 46.70 EFP7GF -9.4205 0.71866 ECMLC 0.62673 -6.27094 2.68699 1600000 329146 0.003646 ECMGC 0.36695 -16.93946 -2.33682 1600000 84954 0.004708 ECMLI 0.62600 -3.39711 4.85872 1600000 210712 0.005695 ECMGI 0.40849 -11.23556 1.43137 1600000 70668 0.005660 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 99 129 -9.206 -9.145 -0.020 -7.922 -8.202 -8.597 IL 1 1 2 1 6 1 32 101 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 32 101 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 85 a u - - MP 3 2 3 7 4 2 32 99 129 -7.194 -7.401 -0.045 -5.815 -2.347 -2.290 -2.490 1.728 -2.320 -3.315 1.691 -2.709 -2.547 1.400 -3.084 -0.283 1.525 -2.613 -0.264 -0.318 ML 4 2 3 7 4 1 30 99 129 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 4 1 28 98 128 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 6 2 3 7 4 0 27 97 127 -4.568 -4.250 -2.265 -0.520 IL 7 7 5 7 4 1 31 100 130 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 8 8 6 8 3 1 31 99 129 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 9 8 6 11 3 1 30 97 127 -8.570 -0.016 -6.888 -0.236 -0.079 -1.305 0.847 D 10 8 6 11 3 0 26 96 126 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 29 98 128 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 84 - U - - MR 12 11 3 14 5 1 29 96 126 -7.296 -0.034 -7.111 -7.323 -8.215 -0.496 -0.875 -1.564 1.267 D 13 11 3 14 5 0 24 95 125 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 28 97 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 83 u a - - MP 15 14 3 19 6 2 28 95 125 -9.206 -9.145 -0.118 -3.852 -8.202 -8.597 -1.638 -1.279 -1.836 1.425 -1.831 -2.654 1.387 -1.672 -1.892 1.294 -2.444 -0.069 1.456 -1.270 -0.056 -0.069 ML 16 14 3 19 6 1 26 94 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 24 94 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 21 91 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 27 95 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 26 95 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 82 a u - - MP 21 20 6 25 4 2 27 93 123 -6.952 -2.709 -0.290 -5.573 -1.864 -1.914 -2.042 1.525 -1.982 -2.863 1.502 -2.343 -1.246 1.448 -2.649 -0.166 1.448 -2.165 0.098 -0.519 ML 22 20 6 25 4 1 25 92 122 -4.516 -4.698 -0.278 -3.428 -0.482 -0.688 -1.135 1.143 MR 23 20 6 25 4 1 22 92 121 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 21 91 120 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 26 93 123 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 25 93 122 -1.837 -0.563 -4.537 0.000 0.000 0.000 0.000 [ MATL 6 ] 5 - u - - - ML 27 26 6 29 3 1 25 91 121 -8.194 -0.018 -6.848 -0.072 -0.354 -0.626 0.694 D 28 26 6 29 3 0 20 89 119 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 24 92 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - u - - - ML 30 29 3 32 3 1 24 90 120 -8.194 -0.018 -6.848 -0.233 -0.359 -0.922 0.881 D 31 29 3 32 3 0 19 88 118 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 24 91 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - a - - - ML 33 32 3 35 3 1 23 89 119 -8.194 -0.018 -6.848 0.855 -0.823 -0.212 -0.392 D 34 32 3 35 3 0 18 87 117 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 23 90 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 36 35 3 38 3 1 22 88 118 -8.194 -0.018 -6.848 -1.920 -1.842 -2.672 1.722 D 37 35 3 38 3 0 18 86 116 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 22 89 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 39 38 3 41 3 1 21 87 117 -8.194 -0.018 -6.848 -2.063 -3.352 1.813 -2.738 D 40 38 3 41 3 0 17 85 115 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 21 88 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - A - - - ML 42 41 3 44 3 1 20 86 116 -8.194 -0.018 -6.848 1.802 -2.837 -2.423 -2.427 D 43 41 3 44 3 0 16 84 114 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 20 87 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - U - - - ML 45 44 3 47 3 1 20 85 115 -8.194 -0.144 -3.451 -1.920 -1.842 -2.672 1.722 D 46 44 3 47 3 0 16 83 113 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 20 86 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - G - - - ML 48 47 3 50 3 1 20 84 114 -8.069 -0.019 -6.723 -1.803 -3.057 1.770 -2.445 D 49 47 3 50 3 0 15 82 111 -7.098 -2.611 -0.271 IL 50 50 3 50 3 1 19 85 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 51 50 3 53 3 1 19 83 113 -8.069 -0.019 -6.723 1.761 -2.584 -2.195 -2.148 D 52 50 3 53 3 0 14 81 110 -7.098 -2.611 -0.271 IL 53 53 3 53 3 1 19 84 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - a - - - ML 54 53 3 56 3 1 18 82 112 -8.069 -0.019 -6.723 0.903 -1.002 -1.127 0.230 D 55 53 3 56 3 0 14 80 110 -7.098 -2.611 -0.271 IL 56 56 3 56 3 1 18 83 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 57 56 3 59 3 1 17 81 111 -8.069 -0.099 -3.992 1.131 -1.160 -1.223 -0.099 D 58 56 3 59 3 0 14 80 109 -7.098 -1.236 -0.815 IL 59 59 3 59 3 1 17 82 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - a - - - ML 60 59 3 62 3 1 17 80 110 -8.064 -0.019 -6.718 0.707 -0.889 -0.667 0.260 D 61 59 3 62 3 0 13 79 109 -7.125 -0.636 -1.517 IL 62 62 3 62 3 1 16 81 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - c - - - ML 63 62 3 65 3 1 16 79 109 -8.194 -0.018 -6.848 -0.072 0.896 -1.483 -0.268 D 64 62 3 65 3 0 11 77 107 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 15 80 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - u - - - ML 66 65 3 68 3 1 15 78 108 -8.194 -0.018 -6.848 -0.350 -0.008 -0.078 0.349 D 67 65 3 68 3 0 10 76 106 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 14 79 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - U - - - ML 69 68 3 71 3 1 14 77 107 -8.194 -0.018 -6.848 -0.661 -1.204 -1.750 1.399 D 70 68 3 71 3 0 9 75 105 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 14 78 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - U - - - ML 72 71 3 74 3 1 13 76 106 -8.194 -0.085 -4.214 -0.214 -1.063 -1.491 1.204 D 73 71 3 74 3 0 9 74 104 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 13 77 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - a - - - ML 75 74 3 77 3 1 13 75 105 -8.127 -0.018 -6.781 0.789 -0.977 -1.136 0.388 D 76 74 3 77 3 0 8 74 103 -6.750 -0.896 -1.141 IL 77 77 3 77 3 1 12 76 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - - - ML 78 77 3 80 3 1 12 74 104 -8.194 -0.018 -6.848 -2.063 -3.352 1.813 -2.738 D 79 77 3 80 3 0 6 72 102 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 11 75 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - A - - - ML 81 80 3 83 3 1 12 73 103 -8.194 -0.018 -6.848 1.802 -2.837 -2.423 -2.427 D 82 80 3 83 3 0 6 71 101 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 10 74 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - U - - - ML 84 83 3 86 3 1 11 72 102 -8.194 -0.018 -6.848 -1.920 -1.842 -2.672 1.722 D 85 83 3 86 3 0 5 70 100 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 10 73 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - A - - - ML 87 86 3 89 3 1 10 71 101 -8.194 -0.018 -6.848 1.429 -1.839 -0.656 -1.347 D 88 86 3 89 3 0 4 69 99 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 9 72 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 26 - G - - - ML 90 89 3 92 3 1 10 70 100 -8.194 -0.018 -6.848 -2.063 -3.352 1.813 -2.738 D 91 89 3 92 3 0 3 68 98 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 8 71 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 27 - G - - - ML 93 92 3 95 3 1 9 69 99 -8.194 -0.018 -6.848 -2.063 -3.352 1.813 -2.738 D 94 92 3 95 3 0 3 67 97 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 7 70 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - G - - - ML 96 95 3 98 3 1 8 68 98 -8.194 -0.018 -6.848 -1.126 -2.677 1.656 -2.098 D 97 95 3 98 3 0 2 66 96 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 7 69 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - A - - - ML 99 98 3 101 3 1 8 67 97 -8.194 -0.018 -6.848 1.607 -1.970 -1.841 -1.251 D 100 98 3 101 3 0 1 65 95 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 6 68 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - C - - - ML 102 101 3 104 3 1 7 66 96 -8.194 -0.018 -6.848 -2.305 1.747 -3.136 -1.607 D 103 101 3 104 3 0 0 64 94 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 5 67 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - A - - - ML 105 104 3 107 3 1 6 65 95 -8.194 -0.018 -6.848 1.210 -1.288 -0.883 -0.445 D 106 104 3 107 3 0 0 63 93 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 5 66 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 32 - u - - - ML 108 107 3 110 3 1 6 64 94 -8.194 -0.018 -6.848 0.358 -0.954 -1.225 0.827 D 109 107 3 110 3 0 0 62 92 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 4 65 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 33 - C - - - ML 111 110 3 113 3 1 5 63 93 -8.194 -0.018 -6.848 -2.305 1.747 -3.136 -1.607 D 112 110 3 113 3 0 0 61 91 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 3 64 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - U - - - ML 114 113 3 116 3 1 4 62 92 -8.194 -0.018 -6.848 -1.920 -1.842 -2.672 1.722 D 115 113 3 116 3 0 0 60 90 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 3 63 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - G - - - ML 117 116 3 119 3 1 4 61 91 -8.194 -0.018 -6.848 -2.063 -3.352 1.813 -2.738 D 118 116 3 119 3 0 0 59 89 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 2 62 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - A - - - ML 120 119 3 122 3 1 3 60 90 -8.194 -0.018 -6.848 1.802 -2.837 -2.423 -2.427 D 121 119 3 122 3 0 0 58 88 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 2 61 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - U - - - ML 123 122 3 125 3 1 3 59 89 -8.194 -0.018 -6.848 -1.920 -1.842 -2.672 1.722 D 124 122 3 125 3 0 0 57 87 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 60 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - G - - - ML 126 125 3 128 3 1 3 58 88 -8.194 -0.018 -6.848 -0.569 -1.745 1.311 -0.873 D 127 125 3 128 3 0 0 56 86 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 59 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - U - - - ML 129 128 3 131 3 1 2 57 87 -8.194 -0.018 -6.848 -0.637 -0.828 -1.625 1.304 D 130 128 3 131 3 0 0 55 85 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 58 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - C - - - ML 132 131 3 134 3 1 2 56 86 -8.194 -0.018 -6.848 -2.305 1.747 -3.136 -1.607 D 133 131 3 134 3 0 0 54 84 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 57 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 41 - U - - - ML 135 134 3 137 3 1 2 55 85 -8.194 -0.018 -6.848 -1.307 -0.856 -2.051 1.487 D 136 134 3 137 3 0 0 53 83 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 56 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 42 - A - - - ML 138 137 3 140 3 1 1 54 84 -8.194 -0.018 -6.848 1.171 -1.646 -0.054 -1.102 D 139 137 3 140 3 0 0 52 82 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 55 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 43 - U - - - ML 141 140 3 143 3 1 1 53 83 -8.194 -0.018 -6.848 -1.920 -1.842 -2.672 1.722 D 142 140 3 143 3 0 0 51 81 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 54 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 44 - G - - - ML 144 143 3 146 3 1 1 52 82 -8.194 -0.018 -6.848 -2.063 -3.352 1.813 -2.738 D 145 143 3 146 3 0 0 50 80 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 53 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 45 - A - - - ML 147 146 3 149 3 1 1 51 81 -8.194 -0.018 -6.848 1.580 -1.538 -1.747 -1.441 D 148 146 3 149 3 0 0 49 79 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 52 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 46 - C - - - ML 150 149 3 152 3 1 1 50 80 -8.194 -0.018 -6.848 -1.316 1.322 -2.164 -0.193 D 151 149 3 152 3 0 0 48 78 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 51 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 47 - U - - - ML 153 152 3 155 3 1 1 49 79 -8.194 -0.018 -6.848 -1.920 -1.842 -2.672 1.722 D 154 152 3 155 3 0 0 47 77 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 50 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 48 - G - - - ML 156 155 3 158 3 1 1 48 78 -8.194 -0.018 -6.848 -2.063 -3.352 1.813 -2.738 D 157 155 3 158 3 0 0 46 76 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 49 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 49 - A - - - ML 159 158 3 161 3 1 1 47 77 -8.194 -0.018 -6.848 1.802 -2.837 -2.423 -2.427 D 160 158 3 161 3 0 0 45 75 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 48 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 50 - U - - - ML 162 161 3 164 3 1 1 46 76 -8.194 -0.018 -6.848 -1.920 -1.842 -2.672 1.722 D 163 161 3 164 3 0 0 44 74 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 47 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 51 - U - - - ML 165 164 3 167 3 1 1 45 75 -8.194 -0.018 -6.848 -0.837 -0.810 -1.727 1.360 D 166 164 3 167 3 0 0 43 73 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 46 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 52 - U - - - ML 168 167 3 170 3 1 1 44 74 -8.194 -0.018 -6.848 -1.167 -0.548 -1.916 1.382 D 169 167 3 170 3 0 0 42 72 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 45 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 53 - A - - - ML 171 170 3 173 3 1 1 43 73 -8.194 -0.018 -6.848 1.802 -2.837 -2.423 -2.427 D 172 170 3 173 3 0 0 41 71 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 44 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - U - - - ML 174 173 3 176 3 1 1 42 72 -8.194 -0.018 -6.848 -1.920 -1.842 -2.672 1.722 D 175 173 3 176 3 0 0 40 69 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 43 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - C - - - ML 177 176 3 179 3 1 1 41 71 -2.849 -0.230 -6.848 -2.305 1.747 -3.136 -1.607 D 178 176 3 179 3 0 0 37 66 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 43 73 -0.898 -1.194 -5.253 0.000 0.000 0.000 0.000 [ MATL 57 ] 60 - U - - - ML 180 179 3 182 3 1 1 36 63 -4.214 -0.093 -6.848 0.041 -0.999 -1.356 1.057 D 181 179 3 182 3 0 0 33 60 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 39 66 -0.990 -1.121 -4.774 0.000 0.000 0.000 0.000 [ MATL 58 ] 65 - U - - - ML 183 182 3 185 3 1 1 29 48 -8.194 -0.018 -6.848 -1.031 -0.195 -1.792 1.232 D 184 182 3 185 3 0 0 28 47 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 66 - G - - - ML 186 185 3 188 3 1 1 28 47 -8.194 -0.018 -6.848 -1.326 -2.321 1.590 -1.360 D 187 185 3 188 3 0 0 27 46 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 67 - A - - - ML 189 188 3 191 3 1 1 27 46 -8.194 -0.018 -6.848 1.321 -1.445 -0.937 -0.709 D 190 188 3 191 3 0 0 26 45 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - U - - - ML 192 191 3 194 3 1 1 26 45 -8.194 -0.018 -6.848 -0.824 -1.262 -1.848 1.454 D 193 191 3 194 3 0 0 25 44 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - A - - - ML 195 194 3 197 3 1 1 25 44 -8.194 -0.018 -6.848 1.138 -0.911 -1.249 -0.240 D 196 194 3 197 3 0 0 24 43 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 70 - G - - - ML 198 197 3 200 3 1 1 24 42 -8.194 -0.018 -6.848 -0.585 -1.786 1.334 -0.935 D 199 197 3 200 3 0 0 23 42 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 71 - U - - - ML 201 200 3 203 3 1 1 23 41 -8.194 -0.018 -6.848 -0.819 -1.261 -1.845 1.453 D 202 200 3 203 3 0 0 22 40 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 72 - A - - - ML 204 203 3 206 3 1 1 21 40 -8.194 -0.018 -6.848 1.802 -2.837 -2.423 -2.427 D 205 203 3 206 3 0 0 21 39 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 73 - G - - - ML 207 206 3 209 3 1 1 20 39 -8.194 -0.018 -6.848 -1.092 -1.626 1.514 -1.511 D 208 206 3 209 3 0 0 19 38 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 74 - A - - - ML 210 209 3 212 3 1 1 19 37 -4.350 -0.086 -6.848 1.802 -2.837 -2.423 -2.427 D 211 209 3 212 3 0 0 17 36 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 21 39 -1.611 -0.685 -4.311 0.000 0.000 0.000 0.000 [ MATL 68 ] 76 - u - - - ML 213 212 3 215 3 1 1 17 36 -8.194 -0.018 -6.848 0.338 -0.873 -0.747 0.673 D 214 212 3 215 3 0 0 17 36 -6.174 -1.687 -0.566 IL 215 215 3 215 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 77 - C - - - ML 216 215 3 218 3 1 1 16 35 -8.194 -0.018 -6.848 -2.305 1.747 -3.136 -1.607 D 217 215 3 218 3 0 0 16 34 -6.174 -1.687 -0.566 IL 218 218 3 218 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 78 - U - - - ML 219 218 3 221 3 1 1 15 33 -8.194 -0.018 -6.848 -1.920 -1.842 -2.672 1.722 D 220 218 3 221 3 0 0 15 33 -6.174 -1.687 -0.566 IL 221 221 3 221 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 79 - G - - - ML 222 221 3 224 3 1 1 13 31 -8.194 -0.018 -6.848 -2.063 -3.352 1.813 -2.738 D 223 221 3 224 3 0 0 13 32 -6.174 -1.687 -0.566 IL 224 224 3 224 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 80 - A - - - ML 225 224 3 227 2 1 1 1 1 * 0.000 1.802 -2.837 -2.423 -2.427 D 226 224 3 227 2 0 0 0 0 * 0.000 IL 227 227 3 227 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 73 ] - - - - - - E 228 227 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME snoMe28S-Cm2645 ACC RF00530 DESC Small nucleolar RNA Me28S-Cm2645 LENG 75 MAXL 160 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:44:45 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 20 EFFN 2.758789 CKSUM 697981519 STATS LOCAL MSV -9.0013 0.71866 STATS LOCAL VITERBI -9.2949 0.71866 STATS LOCAL FORWARD -3.7996 0.71866 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.25559 1.79113 1.45792 1.15328 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 0.00000 * 1 1.40212 1.47188 1.46733 1.22454 1 u - - < 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 2 1.55935 1.43704 2.31285 0.79160 2 u - - - 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 3 1.45752 1.56337 1.43156 1.14313 3 u - - < 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 4 1.48718 1.57115 1.38990 1.14859 4 u - - < 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 5 1.44050 1.63377 1.82201 0.90067 5 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 6 1.55622 1.63832 2.03405 0.76796 6 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 7 0.78518 1.96527 1.53272 1.67187 7 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 8 2.79146 2.72491 3.31555 0.17817 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 9 2.89495 3.79801 0.11882 3.37219 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 10 0.12602 3.43118 3.13682 3.15503 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 11 2.79146 2.72491 3.31555 0.17817 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.13183 4.09170 2.23680 1.46634 0.26236 1.09861 0.40547 12 2.71258 3.59214 0.14619 3.16762 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03742 3.99730 3.99730 1.46634 0.26236 2.12717 0.12690 13 0.15295 3.25121 2.97412 2.95630 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03742 3.99730 3.99730 1.46634 0.26236 2.12717 0.12690 14 0.75000 2.10068 2.18885 1.22685 14 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03742 3.99730 3.99730 1.46634 0.26236 2.12717 0.12690 15 0.58970 2.21365 2.25990 1.46168 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.10013 3.99730 2.56503 1.46634 0.26236 0.74772 0.64140 16 0.88895 2.01752 1.85590 1.20525 16 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03757 3.99333 3.99333 1.46634 0.26236 0.26446 1.45938 17 1.44470 0.74706 2.44823 1.58974 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 18 1.64443 1.38556 1.43315 1.14527 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 19 1.86994 2.25793 2.64338 0.40021 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 20 1.54589 2.15310 2.45339 0.53657 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08624 4.09170 2.71932 1.46634 0.26236 1.09861 0.40547 21 0.83024 2.08327 2.19437 1.11442 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03578 4.04124 4.04124 1.46634 0.26236 0.41012 1.08936 22 2.89495 3.79801 0.11882 3.37219 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 23 0.12602 3.43118 3.13682 3.15503 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 24 2.79146 2.72491 3.31555 0.17817 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 25 0.38263 2.70558 1.84794 2.36932 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 26 2.89495 3.79801 0.11882 3.37219 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 27 2.89495 3.79801 0.11882 3.37219 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 28 2.20689 3.30650 0.22473 2.90799 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 29 0.25954 2.79732 2.71148 2.29087 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 30 3.07871 0.16007 3.65363 2.57703 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 31 0.53542 2.30395 2.01273 1.70878 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 32 1.13546 2.07012 2.25829 0.80290 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 33 3.07871 0.16007 3.65363 2.57703 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 34 2.79146 2.72491 3.31555 0.17817 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 35 2.89495 3.79801 0.11882 3.37219 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 36 0.12602 3.43118 3.13682 3.15503 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 37 2.79146 2.72491 3.31555 0.17817 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 38 1.80494 2.63241 0.46109 2.01728 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 39 1.85208 1.98093 2.54930 0.46679 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 40 3.07871 0.16007 3.65363 2.57703 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 41 2.34189 2.00094 2.85849 0.34067 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 42 0.56228 2.56747 1.41933 2.19384 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 43 2.79146 2.72491 3.31555 0.17817 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 44 2.89495 3.79801 0.11882 3.37219 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 45 0.27761 2.47884 2.64398 2.43625 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 46 2.35025 0.45099 2.94282 1.53740 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 47 2.79146 2.72491 3.31555 0.17817 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 48 2.89495 3.79801 0.11882 3.37219 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 49 0.12602 3.43118 3.13682 3.15503 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 50 2.79146 2.72491 3.31555 0.17817 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 51 1.99788 1.96806 2.62332 0.42757 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 52 2.23991 1.77772 2.76096 0.41358 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 53 0.12602 3.43118 3.13682 3.15503 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 54 2.79146 2.72491 3.31555 0.17817 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 55 3.07871 0.16007 3.65363 2.57703 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.19940 1.80748 4.09170 1.17011 0.37154 1.09861 0.40547 56 1.36173 2.10498 2.35434 0.64060 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.09249 2.63617 4.09170 1.39908 0.28346 1.09861 0.40547 57 2.14100 1.52331 2.67047 0.51877 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 58 2.35953 3.05325 0.26843 2.36711 66 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 59 0.45815 2.41635 2.05188 1.89839 67 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 60 1.98813 2.30056 2.71442 0.36154 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 61 0.58459 2.03157 2.27943 1.56449 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 62 1.81643 2.66161 0.44570 2.06211 70 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 63 1.98476 2.29931 2.71238 0.36258 71 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 64 0.12602 3.43118 3.13682 3.15503 72 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 65 2.19255 2.54098 0.31916 2.49105 73 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 66 0.12602 3.43118 3.13682 3.15503 74 A - - _ 1.38629 1.38629 1.38629 1.38629 0.08675 2.71226 4.09170 0.44456 1.02473 1.09861 0.40547 67 1.14907 2.00888 1.91137 0.91366 76 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 68 3.07871 0.16007 3.65363 2.57703 77 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 69 2.79146 2.72491 3.31555 0.17817 78 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 70 2.89495 3.79801 0.11882 3.37219 79 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 71 0.12602 3.43118 3.13682 3.15503 80 A - - _ 1.38629 1.38629 1.38629 1.38629 0.38144 1.94605 1.74708 0.21951 1.62409 1.09861 0.40547 72 1.46244 1.57456 1.31797 1.22570 82 u - - > 1.38629 1.38629 1.38629 1.38629 0.04048 3.92024 3.92024 1.46634 0.26236 0.17544 1.82692 73 1.48269 1.54446 1.38291 1.17539 83 u - - > 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 74 1.74907 2.01565 2.50474 0.49244 84 U - - - 1.38629 1.38629 1.38629 1.38629 0.03399 4.09170 4.09170 1.46634 0.26236 1.09861 0.40547 75 1.53082 1.65774 1.30416 1.13422 85 u - - > 1.38629 1.38629 1.38629 1.38629 0.01714 4.07485 * 1.46634 0.26236 0.00000 * //