INFERNAL1/a [1.1.5 | Sep 2023] NAME RydC ACC RF00505 DESC RydC RNA STATES 196 NODES 58 CLEN 64 W 80 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 13:03:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3Dupdates/RF00505/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 2.165039 CKSUM 3498142329 NULL 0.000 0.000 0.000 0.000 GA 48.00 TC 48.90 NC 39.30 EFP7GF -10.4567 0.71900 ECMLC 0.57675 -8.51778 2.21203 1600000 584514 0.002053 ECMGC 0.47840 -16.28702 -4.31673 1600000 122775 0.003258 ECMLI 0.56781 -6.11385 3.76293 1600000 327170 0.003668 ECMGI 0.50159 -12.05734 -1.34754 1600000 86110 0.004645 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 80 100 -7.041 -7.248 -0.198 -3.129 IL 1 1 2 1 4 1 20 84 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 84 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 19 81 100 -7.918 -0.021 -6.572 -1.629 1.593 -2.449 -1.066 D 4 2 3 5 3 0 14 79 99 -7.074 -0.665 -1.466 IL 5 5 3 5 3 1 18 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 18 79 99 -8.051 -0.019 -6.705 -1.648 -1.616 -2.390 1.662 D 7 5 3 8 3 0 12 78 98 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 17 78 98 -8.051 -0.019 -6.705 -1.648 -1.616 -2.390 1.662 D 10 8 3 11 3 0 12 77 97 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 16 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 16 77 97 -8.051 -0.019 -6.705 -1.954 1.677 -2.783 -1.325 D 13 11 3 14 3 0 11 76 96 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 15 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 15 76 96 -8.051 -0.019 -6.705 -1.954 1.677 -2.783 -1.325 D 16 14 3 17 3 0 10 75 95 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 15 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 15 75 95 -8.051 -0.019 -6.705 -1.766 -3.014 1.763 -2.402 D 19 17 3 20 3 0 9 74 93 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 14 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 14 74 94 -8.051 -0.019 -6.705 1.754 -2.548 -2.162 -2.108 D 22 20 3 23 3 0 9 73 92 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 13 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 13 73 93 -8.051 -0.019 -6.705 -1.648 -1.616 -2.390 1.662 D 25 23 3 26 3 0 8 72 91 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 12 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 12 72 91 -8.051 -0.019 -6.705 -1.766 -3.014 1.763 -2.402 D 28 26 3 29 3 0 7 71 90 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 11 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 11 71 90 -8.436 -0.018 -6.754 -1.648 -1.616 -2.390 1.662 D 31 29 3 32 3 0 6 70 89 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 10 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 66 - u - - MR 33 32 3 35 3 1 10 70 89 -8.436 -0.018 -6.754 -0.413 -0.985 0.347 0.557 D 34 32 3 35 3 0 5 68 88 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 9 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 65 - U - - MR 36 35 3 38 3 1 10 69 88 -8.436 -0.018 -6.754 -1.648 -1.616 -2.390 1.662 D 37 35 3 38 3 0 4 67 87 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 9 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 64 - C - - MR 39 38 3 41 3 1 9 68 87 -8.436 -0.018 -6.754 -1.954 1.677 -2.783 -1.325 D 40 38 3 41 3 0 3 66 86 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 8 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 63 - U - - MR 42 41 3 44 3 1 8 67 86 -8.436 -0.018 -6.754 -1.648 -1.616 -2.390 1.662 D 43 41 3 44 3 0 2 65 85 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 7 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 62 - U - - MR 45 44 3 47 3 1 7 66 85 -8.436 -0.018 -6.754 -1.648 -1.616 -2.390 1.662 D 46 44 3 47 3 0 1 64 84 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 6 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 61 - U - - MR 48 47 3 50 3 1 7 65 84 -8.436 -0.018 -6.754 -1.648 -1.616 -2.390 1.662 D 49 47 3 50 3 0 1 63 83 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 5 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 60 - U - - MR 51 50 3 53 3 1 6 64 83 -8.436 -0.018 -6.754 -1.648 -1.616 -2.390 1.662 D 52 50 3 53 3 0 0 62 82 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 5 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 59 - G - - MR 54 53 3 56 3 1 5 63 82 -8.436 -0.018 -6.754 -0.269 -1.940 1.332 -1.353 D 55 53 3 56 3 0 0 61 81 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 4 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 58 - C - - MR 57 56 3 59 3 1 5 62 81 -8.436 -0.018 -6.754 -1.954 1.677 -2.783 -1.325 D 58 56 3 59 3 0 0 60 80 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 3 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 57 - G - - MR 60 59 3 62 3 1 4 61 80 -8.436 -0.018 -6.754 -1.766 -3.014 1.763 -2.402 D 61 59 3 62 3 0 0 59 79 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 3 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 56 - G - - MR 63 62 3 65 3 1 4 60 79 -8.436 -0.018 -6.754 -1.766 -3.014 1.763 -2.402 D 64 62 3 65 3 0 0 58 78 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 2 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 55 - A - - MR 66 65 3 68 3 1 3 59 78 -8.436 -0.018 -6.754 1.754 -2.548 -2.162 -2.108 D 67 65 3 68 3 0 0 57 77 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 2 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 54 - C - - MR 69 68 3 71 3 1 3 58 77 -8.436 -0.018 -6.754 -1.954 1.677 -2.783 -1.325 D 70 68 3 71 3 0 0 56 76 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 53 - a - - MR 72 71 3 74 3 1 2 57 76 -8.436 -0.018 -6.754 0.739 -1.472 0.516 -0.887 D 73 71 3 74 3 0 0 55 75 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 52 - u - - MR 75 74 3 77 3 1 2 56 75 -8.436 -0.018 -6.754 -0.776 0.481 -1.562 0.750 D 76 74 3 77 3 0 0 54 74 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 51 - a - - MR 78 77 3 80 3 1 2 55 74 -8.436 -0.018 -6.754 0.712 -1.476 0.549 -0.891 D 79 77 3 80 3 0 0 53 73 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 50 - a - - MR 81 80 3 83 3 1 1 54 73 -8.436 -0.018 -6.754 0.739 -1.472 0.516 -0.887 D 82 80 3 83 3 0 0 52 72 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 49 - u - - MR 84 83 3 86 3 1 1 53 72 -8.436 -0.018 -6.754 0.553 -0.886 -1.099 0.609 D 85 83 3 86 3 0 0 51 71 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 48 - U - - MR 87 86 3 89 3 1 1 52 71 -8.436 -0.018 -6.754 -1.648 -1.616 -2.390 1.662 D 88 86 3 89 3 0 0 50 70 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 47 - U - - MR 90 89 3 92 3 1 1 51 70 -8.436 -0.018 -6.754 -1.648 -1.616 -2.390 1.662 D 91 89 3 92 3 0 0 49 69 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 46 - u - - MR 93 92 3 95 3 1 1 50 69 -8.436 -0.018 -6.754 -0.413 -0.985 0.347 0.557 D 94 92 3 95 3 0 0 48 68 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 45 - G - - MR 96 95 3 98 5 1 1 49 68 -7.170 -0.037 -6.985 -7.197 -8.089 -1.766 -3.014 1.763 -2.402 D 97 95 3 98 5 0 0 48 67 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 11 44 a u - - MP 99 98 3 103 6 2 2 48 67 -9.144 -3.124 -0.196 -7.860 -8.139 -8.534 -2.715 -2.348 1.431 2.234 -2.898 -3.820 0.893 -3.067 -2.847 1.340 -3.392 -0.229 0.593 -3.085 -0.845 -1.902 ML 100 98 3 103 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 47 66 -3.165 -0.273 -6.676 -4.844 -5.950 0.000 0.000 0.000 0.000 [ MATP 34 ] 12 42 G C - - MP 105 104 6 109 6 2 2 46 65 -9.144 -9.083 -0.021 -7.860 -8.139 -8.534 -4.916 -3.177 -5.033 0.083 -5.477 -4.761 -0.799 -5.287 -4.440 3.677 -4.764 -0.883 -1.179 -4.581 -2.846 -3.907 ML 106 104 6 109 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 13 41 A U - - MP 111 110 6 115 6 2 2 44 63 -9.144 -9.083 -0.021 -7.860 -8.139 -8.534 -3.508 -2.536 -3.603 3.042 -4.216 -4.991 0.027 -3.771 -3.476 1.404 -4.037 1.053 -0.226 -4.079 -1.865 -2.440 ML 112 110 6 115 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 14 40 C G - - MP 117 116 6 121 6 2 2 42 61 -9.144 -9.083 -0.021 -7.860 -8.139 -8.534 -4.742 -4.665 -4.399 -0.880 -3.076 -4.786 3.606 -3.905 -4.456 -0.666 -4.695 -2.615 0.418 -4.798 -0.788 -3.289 ML 118 116 6 121 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 15 39 C G - - MP 123 122 6 127 6 2 2 40 59 -9.144 -9.083 -0.021 -7.860 -8.139 -8.534 -4.742 -4.665 -4.399 -0.880 -3.076 -4.786 3.606 -3.905 -4.456 -0.666 -4.695 -2.615 0.418 -4.798 -0.788 -3.289 ML 124 122 6 127 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 16 38 C G - - MP 129 128 6 133 6 2 2 38 57 -9.144 -9.083 -0.021 -7.860 -8.139 -8.534 -4.742 -4.665 -4.399 -0.880 -3.076 -4.786 3.606 -3.905 -4.456 -0.666 -4.695 -2.615 0.418 -4.798 -0.788 -3.289 ML 130 128 6 133 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 17 37 G C - - MP 135 134 6 139 6 2 2 36 55 -9.144 -9.083 -0.021 -7.860 -8.139 -8.534 -4.916 -3.177 -5.033 0.083 -5.477 -4.761 -0.799 -5.287 -4.440 3.677 -4.764 -0.883 -1.179 -4.581 -2.846 -3.907 ML 136 134 6 139 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 18 36 U A - - MP 141 140 6 145 4 2 2 34 53 -1.776 -7.248 -0.553 -5.663 -4.398 -4.227 -4.213 -0.508 -3.111 -4.757 1.221 -3.821 -4.215 -0.283 -4.578 -2.120 3.418 -4.541 -0.782 -3.018 ML 142 140 6 145 4 1 1 32 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 32 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 31 50 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 33 52 -2.905 -3.588 -0.380 -6.074 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 20 - a - - - ML 147 146 6 149 3 1 1 30 49 -8.051 -0.019 -6.705 0.656 0.270 -1.168 -0.371 D 148 146 6 149 3 0 0 29 48 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 21 - U - - - ML 150 149 3 152 3 1 1 29 48 -8.051 -0.019 -6.705 -1.648 -1.616 -2.390 1.662 D 151 149 3 152 3 0 0 28 47 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 22 - u - - - ML 153 152 3 155 3 1 1 28 47 -8.051 -0.019 -6.705 -0.776 0.481 -1.562 0.750 D 154 152 3 155 3 0 0 27 46 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 23 - C - - - ML 156 155 3 158 3 1 1 27 46 -8.051 -0.019 -6.705 -1.954 1.677 -2.783 -1.325 D 157 155 3 158 3 0 0 26 45 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 24 - U - - - ML 159 158 3 161 3 1 1 26 45 -8.051 -0.019 -6.705 -1.648 -1.616 -2.390 1.662 D 160 158 3 161 3 0 0 25 44 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 25 - U - - - ML 162 161 3 164 3 1 1 25 43 -8.051 -0.019 -6.705 -1.648 -1.616 -2.390 1.662 D 163 161 3 164 3 0 0 24 43 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 26 - C - - - ML 165 164 3 167 3 1 1 23 42 -8.051 -0.019 -6.705 -1.954 1.677 -2.783 -1.325 D 166 164 3 167 3 0 0 22 41 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 27 - G - - - ML 168 167 3 170 3 1 1 22 41 -8.051 -0.019 -6.705 -1.766 -3.014 1.763 -2.402 D 169 167 3 170 3 0 0 21 40 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 28 - C - - - ML 171 170 3 173 3 1 1 21 40 -8.051 -0.019 -6.705 -1.954 1.677 -2.783 -1.325 D 172 170 3 173 3 0 0 20 39 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 29 - C - - - ML 174 173 3 176 3 1 1 20 39 -8.051 -0.019 -6.705 -1.954 1.677 -2.783 -1.325 D 175 173 3 176 3 0 0 19 38 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 30 - U - - - ML 177 176 3 179 3 1 1 19 37 -8.051 -0.019 -6.705 -1.648 -1.616 -2.390 1.662 D 178 176 3 179 3 0 0 18 37 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 31 - G - - - ML 180 179 3 182 3 1 1 17 36 -8.051 -0.019 -6.705 -1.766 -3.014 1.763 -2.402 D 181 179 3 182 3 0 0 17 36 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 32 - u - - - ML 183 182 3 185 3 1 1 16 35 -8.051 -0.019 -6.705 -0.776 0.481 -1.562 0.750 D 184 182 3 185 3 0 0 16 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 33 - a - - - ML 186 185 3 188 3 1 1 15 33 -8.051 -0.019 -6.705 0.739 -1.472 0.516 -0.887 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 34 - u - - - ML 189 188 3 191 3 1 1 13 31 -8.051 -0.019 -6.705 -0.778 0.510 -1.565 0.726 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 35 - C - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 -1.954 1.677 -2.783 -1.325 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 57 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RydC ACC RF00505 DESC RydC RNA LENG 64 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 13:03:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3Dupdates/RF00505/CM NSEQ 6 EFFN 2.475586 CKSUM 3498142329 STATS LOCAL MSV -8.4256 0.71900 STATS LOCAL VITERBI -8.7245 0.71900 STATS LOCAL FORWARD -3.6661 0.71900 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.80611 1.28469 1.38474 1.17577 1.38629 1.38629 1.38629 1.38629 0.14350 3.96856 2.16472 1.46634 0.26236 0.00000 * 1 2.68181 0.23779 3.25527 2.25740 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.04271 3.86776 3.86776 1.46634 0.26236 0.28468 1.39537 2 2.67010 2.62387 3.18988 0.20205 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 3 2.67010 2.62387 3.18988 0.20205 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 4 2.92395 0.18641 3.50027 2.45160 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 5 2.92395 0.18641 3.50027 2.45160 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 6 2.76586 3.65257 0.13752 3.22788 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 7 0.14458 3.30327 3.02111 3.01376 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 8 2.67010 2.62387 3.18988 0.20205 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 9 2.76586 3.65257 0.13752 3.22788 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 10 2.67010 2.62387 3.18988 0.20205 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 11 0.63845 2.10138 1.55172 1.98255 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 12 2.62154 3.29898 0.16129 3.23545 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 13 0.57057 2.74140 1.22559 2.56742 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 14 3.25681 0.22545 3.04174 2.15778 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 15 3.25716 0.22542 3.04191 2.15784 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 16 3.25697 0.22543 3.04182 2.15781 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 17 2.62415 3.30216 0.16073 3.23985 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 18 3.03800 1.95675 2.79831 0.28790 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.39466 1.18029 3.96856 0.11881 2.18902 1.09861 0.40547 19 0.91466 1.17485 2.24805 1.68808 20 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 20 2.67010 2.62387 3.18988 0.20205 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 21 1.98754 1.02621 2.53967 0.85399 22 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 22 2.92395 0.18641 3.50027 2.45160 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 23 2.67010 2.62387 3.18988 0.20205 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 24 2.67010 2.62387 3.18988 0.20205 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 25 2.92395 0.18641 3.50027 2.45160 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 26 2.76586 3.65257 0.13752 3.22788 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 27 2.92395 0.18641 3.50027 2.45160 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 28 2.92395 0.18641 3.50027 2.45160 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 29 2.67010 2.62387 3.18988 0.20205 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 30 2.76586 3.65257 0.13752 3.22788 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 31 1.98754 1.02621 2.53967 0.85399 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 32 0.85816 2.47639 1.00404 2.07454 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 33 1.98859 1.00491 2.54213 0.87147 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 34 2.92395 0.18641 3.50027 2.45160 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 35 0.32658 2.98300 1.79357 2.78700 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 36 3.43561 0.19070 3.13731 2.32261 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 37 2.43426 3.20799 0.19487 3.01674 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 38 2.43393 3.20754 0.19496 3.01620 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 39 2.43310 3.20638 0.19519 3.01482 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 40 2.77613 1.79902 2.53942 0.36622 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 41 3.41339 0.19262 3.12728 2.31833 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.39466 1.18029 3.96856 0.11881 2.18902 1.09861 0.40547 42 2.21403 1.78095 1.09087 0.95104 44 u - - > 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 43 2.76586 3.65257 0.13752 3.22788 45 G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 44 1.71343 2.11209 1.12104 0.98663 46 u - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 45 2.67010 2.62387 3.18988 0.20205 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 46 2.67010 2.62387 3.18988 0.20205 48 U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 47 0.99104 2.03850 2.18748 0.95091 49 u - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 48 0.85816 2.47639 1.00404 2.07454 50 a - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 49 0.87745 2.47961 0.98058 2.07714 51 a - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 50 1.98754 1.02621 2.53967 0.85399 52 u - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 51 0.85816 2.47639 1.00404 2.07454 53 a - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 52 2.92395 0.18641 3.50027 2.45160 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 53 0.14458 3.30327 3.02111 3.01376 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 54 2.76586 3.65257 0.13752 3.22788 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 55 2.76586 3.65257 0.13752 3.22788 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 56 2.92395 0.18641 3.50027 2.45160 58 C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 57 1.60660 2.82547 0.42815 2.42544 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 58 2.67010 2.62387 3.18988 0.20205 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 59 2.67010 2.62387 3.18988 0.20205 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 60 2.67010 2.62387 3.18988 0.20205 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 61 2.67010 2.62387 3.18988 0.20205 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 62 2.92395 0.18641 3.50027 2.45160 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 63 2.67010 2.62387 3.18988 0.20205 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.03853 3.96856 3.96856 1.46634 0.26236 1.09861 0.40547 64 1.71343 2.11209 1.12104 0.98663 66 u - - : 1.38629 1.38629 1.38629 1.38629 0.01945 3.94948 * 1.46634 0.26236 0.00000 * //