INFERNAL1/a [1.1.4 | Dec 2020] NAME RydC ACC RF00505 DESC RydC RNA STATES 196 NODES 59 CLEN 64 W 81 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:43:25 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.143555 CKSUM 748154923 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 45.80 NC 30.90 EFP7GF -10.3784 0.71905 ECMLC 0.54472 -9.28480 1.97791 1600000 554076 0.002166 ECMGC 0.45623 -16.73144 -4.16820 1600000 123395 0.003242 ECMLI 0.54152 -6.73153 3.60296 1600000 323325 0.003711 ECMGI 0.50738 -11.68409 -1.11383 1600000 85361 0.004686 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 100 -7.033 -7.240 -0.050 -5.654 IL 1 1 2 1 4 1 20 85 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 20 81 100 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 4 2 3 5 3 0 14 79 99 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 19 80 99 -8.044 -0.019 -6.698 -1.634 -1.604 -2.375 1.658 D 7 5 3 8 3 0 14 78 98 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 18 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 18 79 98 -8.044 -0.019 -6.698 -1.634 -1.604 -2.375 1.658 D 10 8 3 11 3 0 13 77 97 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 17 81 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 17 78 97 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 13 11 3 14 3 0 12 76 96 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 17 80 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 17 76 96 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 16 14 3 17 3 0 11 75 95 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 16 79 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 16 75 95 -8.044 -0.019 -6.698 -1.750 -2.995 1.759 -2.383 D 19 17 3 20 3 0 10 74 94 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 15 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 15 74 94 -8.044 -0.019 -6.698 1.751 -2.532 -2.148 -2.091 D 22 20 3 23 3 0 10 73 93 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 14 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 14 73 93 -8.044 -0.019 -6.698 -1.634 -1.604 -2.375 1.658 D 25 23 3 26 3 0 9 72 92 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 13 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 13 72 92 -8.044 -0.019 -6.698 -1.750 -2.995 1.759 -2.383 D 28 26 3 29 3 0 8 71 90 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 13 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 12 71 91 -8.044 -0.019 -6.698 -1.634 -1.604 -2.375 1.658 D 31 29 3 32 3 0 8 70 89 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 12 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 11 70 89 -8.429 -0.018 -6.747 1.751 -2.532 -2.148 -2.091 D 34 32 3 35 3 0 7 69 88 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 10 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 66 - u - - MR 36 35 3 38 3 1 11 69 88 -8.429 -0.018 -6.747 -0.417 -0.944 0.148 0.699 D 37 35 3 38 3 0 5 67 87 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 10 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 65 - U - - MR 39 38 3 41 3 1 10 68 87 -8.429 -0.018 -6.747 -1.634 -1.604 -2.375 1.658 D 40 38 3 41 3 0 4 66 86 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 9 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 64 - C - - MR 42 41 3 44 3 1 9 67 86 -8.429 -0.018 -6.747 -1.935 1.673 -2.764 -1.310 D 43 41 3 44 3 0 3 65 85 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 8 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 63 - U - - MR 45 44 3 47 3 1 9 66 85 -8.429 -0.018 -6.747 -1.634 -1.604 -2.375 1.658 D 46 44 3 47 3 0 3 64 84 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 7 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 62 - U - - MR 48 47 3 50 3 1 8 65 84 -8.429 -0.018 -6.747 -1.634 -1.604 -2.375 1.658 D 49 47 3 50 3 0 2 63 83 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 7 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 61 - U - - MR 51 50 3 53 3 1 7 64 83 -8.429 -0.018 -6.747 -1.634 -1.604 -2.375 1.658 D 52 50 3 53 3 0 1 62 82 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 6 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 60 - U - - MR 54 53 3 56 3 1 6 63 82 -8.429 -0.018 -6.747 -1.634 -1.604 -2.375 1.658 D 55 53 3 56 3 0 0 61 81 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 5 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 59 - G - - MR 57 56 3 59 3 1 6 62 81 -8.429 -0.018 -6.747 -0.161 -1.863 1.274 -1.276 D 58 56 3 59 3 0 0 60 80 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 4 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 58 - C - - MR 60 59 3 62 3 1 5 61 80 -8.429 -0.018 -6.747 -1.935 1.673 -2.764 -1.310 D 61 59 3 62 3 0 0 59 79 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 4 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 57 - G - - MR 63 62 3 65 3 1 5 60 79 -8.429 -0.018 -6.747 -1.750 -2.995 1.759 -2.383 D 64 62 3 65 3 0 0 58 78 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 3 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 56 - G - - MR 66 65 3 68 3 1 4 59 78 -8.429 -0.018 -6.747 -1.750 -2.995 1.759 -2.383 D 67 65 3 68 3 0 0 57 77 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 2 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 55 - A - - MR 69 68 3 71 3 1 3 58 77 -8.429 -0.018 -6.747 1.751 -2.532 -2.148 -2.091 D 70 68 3 71 3 0 0 56 76 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 2 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 54 - C - - MR 72 71 3 74 3 1 3 57 76 -8.429 -0.018 -6.747 -1.935 1.673 -2.764 -1.310 D 73 71 3 74 3 0 0 55 75 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 53 - a - - MR 75 74 3 77 3 1 3 56 75 -8.429 -0.018 -6.747 0.868 -1.453 0.338 -0.875 D 76 74 3 77 3 0 0 54 74 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 52 - u - - MR 78 77 3 80 3 1 2 55 74 -8.429 -0.018 -6.747 -0.774 0.321 -1.550 0.868 D 79 77 3 80 3 0 0 53 73 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 51 - g - - MR 81 80 3 83 3 1 2 54 73 -8.429 -0.018 -6.747 0.564 -1.505 0.713 -0.916 D 82 80 3 83 3 0 0 52 72 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 50 - a - - MR 84 83 3 86 3 1 1 53 72 -8.429 -0.018 -6.747 0.868 -1.453 0.338 -0.875 D 85 83 3 86 3 0 0 51 71 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 49 - u - - MR 87 86 3 89 3 1 1 52 71 -8.429 -0.018 -6.747 0.406 -0.872 -1.124 0.739 D 88 86 3 89 3 0 0 50 70 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 48 - U - - MR 90 89 3 92 3 1 1 51 70 -8.429 -0.018 -6.747 -1.634 -1.604 -2.375 1.658 D 91 89 3 92 3 0 0 49 69 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 47 - U - - MR 93 92 3 95 3 1 1 50 69 -8.429 -0.018 -6.747 -1.634 -1.604 -2.375 1.658 D 94 92 3 95 3 0 0 48 68 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 46 - u - - MR 96 95 3 98 3 1 1 49 68 -8.429 -0.018 -6.747 -0.417 -0.944 0.148 0.699 D 97 95 3 98 3 0 0 47 67 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 45 - G - - MR 99 98 3 101 3 1 1 48 67 -8.429 -0.018 -6.747 -1.750 -2.995 1.759 -2.383 D 100 98 3 101 3 0 0 46 66 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 44 - g - - MR 102 101 3 104 5 1 1 47 66 -2.271 -0.369 -6.978 -7.190 -8.082 -0.430 -1.053 0.572 0.366 D 103 101 3 104 5 0 0 45 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 47 66 -3.077 -0.292 -6.588 -4.756 -5.861 0.000 0.000 0.000 0.000 [ MATP 35 ] 12 42 G C - - MP 105 104 3 109 6 2 2 46 65 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -4.901 -3.170 -5.016 0.093 -5.456 -4.755 -0.781 -5.269 -4.430 3.674 -4.756 -0.876 -1.162 -4.572 -2.827 -3.891 ML 106 104 3 109 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 13 41 a u - - MP 111 110 6 115 6 2 2 44 63 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -3.476 -2.509 -3.574 2.990 -4.177 -4.943 0.061 -3.747 -3.448 1.439 -4.007 1.158 -0.192 -4.036 -1.829 -2.413 ML 112 110 6 115 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 14 40 C G - - MP 117 116 6 121 6 2 2 42 61 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -4.726 -4.647 -4.385 -0.863 -3.066 -4.774 3.602 -3.893 -4.441 -0.647 -4.683 -2.596 0.430 -4.783 -0.777 -3.275 ML 118 116 6 121 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 15 39 C G - - MP 123 122 6 127 6 2 2 40 59 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -4.726 -4.647 -4.385 -0.863 -3.066 -4.774 3.602 -3.893 -4.441 -0.647 -4.683 -2.596 0.430 -4.783 -0.777 -3.275 ML 124 122 6 127 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 16 38 C G - - MP 129 128 6 133 6 2 2 38 57 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -4.726 -4.647 -4.385 -0.863 -3.066 -4.774 3.602 -3.893 -4.441 -0.647 -4.683 -2.596 0.430 -4.783 -0.777 -3.275 ML 130 128 6 133 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 17 37 G C - - MP 135 134 6 139 6 2 2 36 55 -9.141 -9.080 -0.021 -7.856 -8.136 -8.531 -4.901 -3.170 -5.016 0.093 -5.456 -4.755 -0.781 -5.269 -4.430 3.674 -4.756 -0.876 -1.162 -4.572 -2.827 -3.891 ML 136 134 6 139 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 18 36 U A - - MP 141 140 6 145 4 2 2 34 53 -1.988 -7.240 -0.471 -5.654 -4.379 -4.209 -4.196 -0.490 -3.099 -4.743 1.233 -3.807 -4.199 -0.263 -4.563 -2.102 3.411 -4.523 -0.770 -3.004 ML 142 140 6 145 4 1 1 32 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 32 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 31 50 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 33 52 -2.780 -3.463 -0.420 -5.948 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 20 - a - - - ML 147 146 6 149 3 1 1 30 49 -8.044 -0.019 -6.698 0.788 0.096 -1.150 -0.409 D 148 146 6 149 3 0 0 29 48 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 21 - U - - - ML 150 149 3 152 3 1 1 29 48 -8.044 -0.019 -6.698 -1.634 -1.604 -2.375 1.658 D 151 149 3 152 3 0 0 28 47 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 22 - u - - - ML 153 152 3 155 3 1 1 28 47 -8.044 -0.019 -6.698 -0.774 0.321 -1.550 0.868 D 154 152 3 155 3 0 0 27 46 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 23 - C - - - ML 156 155 3 158 3 1 1 27 46 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 157 155 3 158 3 0 0 26 45 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 24 - U - - - ML 159 158 3 161 3 1 1 26 45 -8.044 -0.019 -6.698 -1.634 -1.604 -2.375 1.658 D 160 158 3 161 3 0 0 25 44 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 25 - U - - - ML 162 161 3 164 3 1 1 25 43 -8.044 -0.019 -6.698 -1.634 -1.604 -2.375 1.658 D 163 161 3 164 3 0 0 24 43 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 26 - C - - - ML 165 164 3 167 3 1 1 23 42 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 166 164 3 167 3 0 0 22 41 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 27 - G - - - ML 168 167 3 170 3 1 1 22 41 -8.044 -0.019 -6.698 -1.750 -2.995 1.759 -2.383 D 169 167 3 170 3 0 0 21 40 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 28 - C - - - ML 171 170 3 173 3 1 1 21 40 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 172 170 3 173 3 0 0 20 39 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 29 - C - - - ML 174 173 3 176 3 1 1 20 39 -8.044 -0.019 -6.698 -1.935 1.673 -2.764 -1.310 D 175 173 3 176 3 0 0 19 38 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 30 - U - - - ML 177 176 3 179 3 1 1 19 37 -8.044 -0.019 -6.698 -1.634 -1.604 -2.375 1.658 D 178 176 3 179 3 0 0 18 37 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 31 - G - - - ML 180 179 3 182 3 1 1 17 36 -8.044 -0.019 -6.698 -1.750 -2.995 1.759 -2.383 D 181 179 3 182 3 0 0 17 36 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 32 - u - - - ML 183 182 3 185 3 1 1 16 35 -8.044 -0.019 -6.698 -0.774 0.321 -1.550 0.868 D 184 182 3 185 3 0 0 16 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 33 - a - - - ML 186 185 3 188 3 1 1 15 33 -8.044 -0.019 -6.698 0.868 -1.453 0.338 -0.875 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 34 - c - - - ML 189 188 3 191 3 1 1 13 31 -8.044 -0.019 -6.698 -0.789 0.656 -1.585 0.596 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 35 - C - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 -1.935 1.673 -2.764 -1.310 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 58 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME RydC ACC RF00505 DESC RydC RNA LENG 64 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:43:25 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 5 EFFN 2.397461 CKSUM 748154923 STATS LOCAL MSV -8.3706 0.71905 STATS LOCAL VITERBI -8.7643 0.71905 STATS LOCAL FORWARD -3.7338 0.71905 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.76074 1.29417 1.40447 1.17616 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 0.00000 * 1 2.87920 0.19489 3.45543 2.41555 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 2 2.63536 2.59501 3.15379 0.20952 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 3 2.63536 2.59501 3.15379 0.20952 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 4 2.87920 0.19489 3.45543 2.41555 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 5 2.87920 0.19489 3.45543 2.41555 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 6 2.72815 3.60982 0.14360 3.18527 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 7 0.15046 3.26638 2.98781 2.97304 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 8 2.63536 2.59501 3.15379 0.20952 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 9 2.72815 3.60982 0.14360 3.18527 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 10 2.63536 2.59501 3.15379 0.20952 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 11 0.15046 3.26638 2.98781 2.97304 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 12 2.59239 3.25526 0.16794 3.18968 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 13 0.61433 2.68785 1.17047 2.51641 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 14 3.21611 0.23453 2.99803 2.12810 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 15 3.21788 0.23434 2.99888 2.12841 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 16 3.21843 0.23428 2.99915 2.12851 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 17 2.60022 3.26463 0.16620 3.20266 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 18 2.99580 1.92519 2.75160 0.30066 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.33727 1.31919 3.96671 0.13609 2.06172 1.09861 0.40547 19 0.82201 1.30465 2.22617 1.70791 20 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 20 2.63536 2.59501 3.15379 0.20952 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 21 1.97479 1.14636 2.51810 0.77045 22 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 22 2.87920 0.19489 3.45543 2.41555 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 23 2.63536 2.59501 3.15379 0.20952 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 24 2.63536 2.59501 3.15379 0.20952 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 25 2.87920 0.19489 3.45543 2.41555 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 26 2.72815 3.60982 0.14360 3.18527 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 27 2.87920 0.19489 3.45543 2.41555 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 28 2.87920 0.19489 3.45543 2.41555 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 29 2.63536 2.59501 3.15379 0.20952 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 30 2.72815 3.60982 0.14360 3.18527 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 31 1.97479 1.14636 2.51810 0.77045 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 32 0.76799 2.45101 1.13479 2.05293 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 33 1.98678 0.90474 2.54559 0.96814 34 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 34 2.87920 0.19489 3.45543 2.41555 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 35 0.34114 2.93545 1.76203 2.74520 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 36 3.39922 0.19704 3.09870 2.29926 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 37 2.40401 3.16474 0.20274 2.97736 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 38 2.40309 3.16347 0.20300 2.97585 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 39 2.40121 3.16088 0.20354 2.97274 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 40 2.72156 1.75613 2.48531 0.38829 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 41 3.35314 0.20122 3.07792 2.29027 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.33727 1.31919 3.96671 0.13609 2.06172 1.09861 0.40547 42 1.71989 2.15482 0.96364 1.12859 44 g - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 43 2.72815 3.60982 0.14360 3.18527 45 G - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 44 1.70882 2.07558 1.26893 0.88599 46 u - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 45 2.63536 2.59501 3.15379 0.20952 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 46 2.63536 2.59501 3.15379 0.20952 48 U - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 47 1.09918 2.02292 2.19898 0.85880 49 u - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 48 0.76799 2.45101 1.13479 2.05293 50 a - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 49 0.98731 2.48811 0.86807 2.08268 51 g - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 50 1.97479 1.14636 2.51810 0.77045 52 u - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 51 0.76799 2.45101 1.13479 2.05293 53 a - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 52 2.87920 0.19489 3.45543 2.41555 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 53 0.15046 3.26638 2.98781 2.97304 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 54 2.72815 3.60982 0.14360 3.18527 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 55 2.72815 3.60982 0.14360 3.18527 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 56 2.87920 0.19489 3.45543 2.41555 58 C - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 57 1.52105 2.75286 0.47405 2.35076 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 58 2.63536 2.59501 3.15379 0.20952 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 59 2.63536 2.59501 3.15380 0.20952 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 60 2.63536 2.59501 3.15379 0.20952 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 61 2.63536 2.59501 3.15379 0.20952 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 62 2.87920 0.19489 3.45543 2.41555 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 63 2.63536 2.59501 3.15379 0.20952 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96671 3.96671 1.46634 0.26236 1.09861 0.40547 64 1.70882 2.07558 1.26893 0.88599 66 u - - : 1.38629 1.38629 1.38629 1.38629 0.01949 3.94759 * 1.46634 0.26236 0.00000 * //