INFERNAL1/a [1.1.5 | Sep 2023] NAME Rota_CRE ACC RF00501 DESC Rotavirus cis-acting replication element (CRE) STATES 208 NODES 53 CLEN 68 W 85 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 01:38:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00501/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 14 EFFN 1.931152 CKSUM 3397252940 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 55.40 NC 39.20 EFP7GF -9.2539 0.71906 ECMLC 0.64473 -5.62789 3.48534 1600000 427455 0.002807 ECMGC 0.39190 -16.06164 -1.83176 1600000 105676 0.003785 ECMLI 0.63429 -4.05973 4.83371 1600000 338093 0.003549 ECMGI 0.43996 -10.17562 1.70189 1600000 74394 0.005377 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 85 105 -9.108 -9.047 -0.021 -7.824 -8.103 -8.498 IL 1 1 2 1 6 1 27 86 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 27 86 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 68 G C - - MP 3 2 3 7 6 2 27 85 105 -9.108 -9.047 -0.021 -7.824 -8.103 -8.498 -4.747 -3.096 -4.847 0.197 -5.240 -4.696 -0.603 -5.090 -4.331 3.639 -4.668 -0.796 -0.989 -4.471 -2.641 -3.723 ML 4 2 3 7 6 1 24 84 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 23 84 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 20 82 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 25 85 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 25 84 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 67 G C - - MP 9 8 6 13 4 2 25 83 103 -6.949 -7.156 -0.053 -5.570 -4.747 -3.096 -4.847 0.197 -5.240 -4.696 -0.603 -5.090 -4.331 3.639 -4.668 -0.796 -0.989 -4.471 -2.641 -3.723 ML 10 8 6 13 4 1 23 83 103 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 4 1 21 82 103 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 12 8 6 13 4 0 20 81 102 -4.568 -4.250 -2.265 -0.520 IL 13 13 5 13 4 1 24 84 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 14 14 6 14 3 1 24 83 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 15 14 6 17 3 1 23 81 101 -8.355 -0.019 -6.673 1.154 -0.548 -1.181 -0.622 D 16 14 6 17 3 0 19 79 99 -5.620 -0.734 -1.403 IL 17 17 3 17 3 1 23 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 66 - A - - MR 18 17 3 20 3 1 22 80 100 -8.355 -0.019 -6.673 1.719 -2.373 -2.005 -1.916 D 19 17 3 20 3 0 17 78 98 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 22 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 65 - G - - MR 21 20 3 23 5 1 22 79 99 -7.094 -0.039 -6.909 -7.122 -8.013 -1.582 -2.803 1.724 -2.189 D 22 20 3 23 5 0 16 77 97 -5.352 -0.707 -2.978 -4.409 -2.404 IR 23 23 3 23 5 1 20 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 64 a u - - MP 24 23 3 28 6 2 21 78 98 -9.108 -9.047 -0.021 -7.824 -8.103 -8.498 -3.369 -2.435 -3.467 2.879 -4.002 -4.767 0.224 -3.646 -3.356 1.549 -3.907 1.188 -0.037 -3.888 -1.667 -2.320 ML 25 23 3 28 6 1 18 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 3 28 6 1 16 76 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 3 28 6 0 13 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 19 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 19 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 63 U G - - MP 30 29 6 34 4 2 19 76 96 -6.949 -7.156 -0.053 -5.570 -4.094 -4.015 -3.796 -0.349 -2.552 -4.220 1.735 -3.325 -3.836 -0.157 -4.128 -2.016 0.885 -4.179 3.008 -2.707 ML 31 29 6 34 4 1 16 76 96 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 4 1 14 75 96 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 33 29 6 34 4 0 13 74 95 -4.568 -4.250 -2.265 -0.520 IL 34 34 5 34 4 1 18 77 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 35 35 6 35 3 1 18 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - U - - - ML 36 35 6 38 3 1 17 73 93 -8.355 -0.019 -6.673 -1.039 -0.759 -1.773 1.395 D 37 35 6 38 3 0 12 72 92 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 16 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 62 - U - - MR 39 38 3 41 5 1 17 72 92 -7.094 -0.039 -6.909 -7.122 -8.013 -1.487 -1.483 -2.221 1.619 D 40 38 3 41 5 0 10 71 91 -5.352 -0.707 -2.978 -4.409 -2.404 IR 41 41 3 41 5 1 14 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 61 U A - - MP 42 41 3 46 6 2 17 71 91 -9.108 -9.047 -0.021 -7.824 -8.103 -8.498 -4.198 -4.023 -4.036 -0.318 -2.976 -4.599 1.353 -3.672 -4.040 -0.065 -4.413 -1.922 3.332 -4.349 -0.652 -2.864 ML 43 41 3 46 6 1 12 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 3 46 6 1 11 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 3 46 6 0 7 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 13 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 14 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 60 A U - - MP 48 47 6 52 6 2 15 69 89 -9.108 -9.047 -0.021 -7.824 -8.103 -8.498 -3.797 -2.827 -3.815 3.336 -4.156 -5.219 0.144 -3.857 -3.707 1.072 -4.255 -0.302 -0.273 -4.406 -1.797 -2.649 ML 49 47 6 52 6 1 11 68 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 10 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 7 66 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 12 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 12 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 59 A U - - MP 54 53 6 58 4 2 13 67 87 -6.949 -7.156 -0.053 -5.570 -3.797 -2.827 -3.815 3.336 -4.156 -5.219 0.144 -3.857 -3.707 1.072 -4.255 -0.302 -0.273 -4.406 -1.797 -2.649 ML 55 53 6 58 4 1 10 67 88 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 1 8 67 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 0 7 66 86 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 1 12 69 89 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 1 11 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - U - - - ML 60 59 6 62 3 1 12 65 85 -7.965 -0.021 -6.619 -1.487 -1.483 -2.221 1.619 D 61 59 6 62 3 0 6 64 83 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 11 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 11 - U - - - ML 63 62 3 65 3 1 11 64 84 -8.355 -0.019 -6.673 -1.487 -1.483 -2.221 1.619 D 64 62 3 65 3 0 5 63 82 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 9 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 58 - C - - MR 66 65 3 68 5 1 11 63 83 -7.094 -0.039 -6.909 -7.122 -8.013 -1.743 1.625 -2.567 -1.156 D 67 65 3 68 5 0 4 62 81 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 8 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 57 C G - - MP 69 68 3 73 6 2 11 62 82 -9.108 -9.047 -0.021 -7.824 -8.103 -8.498 -4.557 -4.464 -4.246 -0.695 -2.962 -4.657 3.554 -3.773 -4.296 -0.456 -4.556 -2.411 0.552 -4.626 -0.669 -3.135 ML 70 68 3 73 6 1 5 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 5 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 1 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 7 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 7 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 56 G C - - MP 75 74 6 79 6 2 10 60 80 -9.108 -9.047 -0.021 -7.824 -8.103 -8.498 -4.174 -1.364 -4.209 0.584 -4.792 -4.443 -0.253 -4.614 -4.046 3.480 -4.399 -0.519 -0.544 -3.992 -2.229 -3.156 ML 76 74 6 79 6 1 5 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 4 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 1 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 6 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 6 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 55 c g - - MP 81 80 6 85 6 2 8 58 78 -9.108 -9.047 -0.021 -7.824 -8.103 -8.498 -3.751 -3.725 -3.592 -0.021 -2.482 -4.116 2.953 -3.217 -3.614 0.198 -3.979 -1.763 1.131 -3.874 1.418 -2.491 ML 82 80 6 85 6 1 4 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 3 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 1 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 5 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 5 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 54 U A - - MP 87 86 6 91 4 2 6 56 76 -6.949 -7.156 -0.053 -5.570 -4.198 -4.023 -4.036 -0.318 -2.976 -4.599 1.353 -3.672 -4.040 -0.065 -4.413 -1.922 3.332 -4.349 -0.652 -2.864 ML 88 86 6 91 4 1 3 56 76 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 2 56 76 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 55 75 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 5 57 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 4 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - a - - - ML 93 92 6 95 3 1 4 54 73 -8.355 -0.019 -6.673 0.852 -0.938 -1.063 0.256 D 94 92 6 95 3 0 0 52 72 -5.620 -0.734 -1.403 IL 95 95 3 95 3 1 3 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 53 - A - - MR 96 95 3 98 5 1 4 53 72 -7.094 -0.084 -6.909 -4.756 -8.013 1.479 -1.620 -1.504 -0.904 D 97 95 3 98 5 0 0 51 71 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 2 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 52 U A - - MP 99 98 3 103 6 2 4 52 71 -9.087 -9.027 -0.021 -7.803 -8.083 -8.478 -4.089 -3.911 -3.939 -0.214 -2.903 -4.512 1.424 -3.591 -3.944 0.056 -4.323 -1.814 3.278 -4.244 -0.581 -2.779 ML 100 98 3 103 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 51 70 -7.205 -5.934 -1.256 -5.912 -1.046 -4.125 0.771 -0.665 -0.383 -0.159 D 102 98 3 103 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 2 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 2 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 51 C G - - MP 105 104 6 109 4 2 3 50 69 -6.949 -7.156 -0.053 -5.570 -4.557 -4.464 -4.246 -0.695 -2.962 -4.657 3.554 -3.773 -4.296 -0.456 -4.556 -2.411 0.552 -4.626 -0.669 -3.135 ML 106 104 6 109 4 1 1 50 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 49 69 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 48 68 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 51 71 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - g - - - ML 111 110 6 113 3 1 1 47 67 -8.355 -0.019 -6.673 0.060 -1.259 0.863 -0.473 D 112 110 6 113 3 0 0 46 65 -5.620 -0.734 -1.403 IL 113 113 3 113 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 50 - A - - MR 114 113 3 116 5 1 1 46 66 -7.094 -0.039 -6.909 -7.122 -8.013 1.719 -2.373 -2.005 -1.916 D 115 113 3 116 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 49 a u - - MP 117 116 3 121 6 2 2 45 65 -9.108 -9.047 -0.021 -7.824 -8.103 -8.498 -3.355 -2.421 -3.455 2.837 -3.990 -4.747 0.234 -3.637 -3.343 1.565 -3.894 1.281 -0.027 -3.870 -1.656 -2.309 ML 118 116 3 121 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 48 U A - - MP 123 122 6 127 6 2 2 43 63 -9.108 -9.047 -0.021 -7.824 -8.103 -8.498 -4.198 -4.023 -4.036 -0.318 -2.976 -4.599 1.353 -3.672 -4.040 -0.065 -4.413 -1.922 3.332 -4.349 -0.652 -2.864 ML 124 122 6 127 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 42 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 47 U A - - MP 129 128 6 133 6 2 2 41 61 -9.108 -9.047 -0.021 -7.824 -8.103 -8.498 -4.198 -4.023 -4.036 -0.318 -2.976 -4.599 1.353 -3.672 -4.040 -0.065 -4.413 -1.922 3.332 -4.349 -0.652 -2.864 ML 130 128 6 133 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 46 c g - - MP 135 134 6 139 4 2 2 39 59 -6.949 -7.156 -0.053 -5.570 -3.777 -3.778 -3.596 -0.117 -2.472 -4.094 2.534 -3.217 -3.632 0.095 -3.981 -1.864 1.077 -3.892 2.284 -2.518 ML 136 134 6 139 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 39 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 38 58 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 41 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - G - - - ML 141 140 6 143 3 1 1 37 56 -7.965 -0.021 -6.619 0.203 -1.579 1.007 -0.985 D 142 140 6 143 3 0 0 35 55 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - A - - - ML 144 143 3 146 3 1 1 36 55 -7.965 -0.021 -6.619 1.719 -2.373 -2.005 -1.916 D 145 143 3 146 3 0 0 34 54 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - G - - - ML 147 146 3 149 3 1 1 34 54 -7.965 -0.021 -6.619 0.038 -1.668 1.127 -1.074 D 148 146 3 149 3 0 0 33 53 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - a - - - ML 150 149 3 152 3 1 1 33 53 -7.965 -0.021 -6.619 0.817 -1.385 0.357 -0.802 D 151 149 3 152 3 0 0 32 51 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - A - - - ML 153 152 3 155 3 1 1 32 51 -7.965 -0.021 -6.619 1.326 -1.574 -0.567 -1.051 D 154 152 3 155 3 0 0 31 50 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - U - - - ML 156 155 3 158 3 1 1 31 50 -7.965 -0.021 -6.619 -1.487 -1.483 -2.221 1.619 D 157 155 3 158 3 0 0 30 49 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - G - - - ML 159 158 3 161 3 1 1 30 49 -7.965 -0.021 -6.619 -1.582 -2.803 1.724 -2.189 D 160 158 3 161 3 0 0 29 48 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - a - - - ML 162 161 3 164 3 1 1 29 48 -7.965 -0.072 -4.495 0.829 -1.384 0.341 -0.802 D 163 161 3 164 3 0 0 28 47 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - u - - - ML 165 164 3 167 3 1 1 28 47 -7.915 -0.021 -6.569 -0.344 -0.893 0.230 0.586 D 166 164 3 167 3 0 0 27 46 -6.571 -1.070 -0.962 IL 167 167 3 167 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - g - - - ML 168 167 3 170 3 1 1 27 46 -7.965 -0.021 -6.619 -0.382 -0.995 0.512 0.384 D 169 167 3 170 3 0 0 26 45 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 34 - A - - - ML 171 170 3 173 3 1 1 26 45 -7.965 -0.021 -6.619 1.719 -2.373 -2.005 -1.916 D 172 170 3 173 3 0 0 25 44 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 35 - U - - - ML 174 173 3 176 3 1 1 25 43 -7.965 -0.072 -4.495 -1.487 -1.483 -2.221 1.619 D 175 173 3 176 3 0 0 24 43 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 36 - G - - - ML 177 176 3 179 3 1 1 23 42 -7.915 -0.021 -6.569 -0.689 -2.102 1.482 -1.504 D 178 176 3 179 3 0 0 22 41 -6.571 -1.070 -0.962 IL 179 179 3 179 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 37 - a - - - ML 180 179 3 182 3 1 1 22 41 -7.965 -0.021 -6.619 0.695 -1.399 0.518 -0.810 D 181 179 3 182 3 0 0 21 40 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 38 - C - - - ML 183 182 3 185 3 1 1 21 40 -7.965 -0.021 -6.619 -1.743 1.625 -2.567 -1.156 D 184 182 3 185 3 0 0 20 39 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 39 - a - - - ML 186 185 3 188 3 1 1 20 39 -7.965 -0.021 -6.619 0.380 -0.929 0.209 0.026 D 187 185 3 188 3 0 0 19 38 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 40 - a - - - ML 189 188 3 191 3 1 1 19 37 -7.965 -0.021 -6.619 0.587 -0.908 -0.090 0.036 D 190 188 3 191 3 0 0 18 37 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 41 - A - - - ML 192 191 3 194 3 1 1 18 36 -7.965 -0.021 -6.619 1.719 -2.373 -2.005 -1.916 D 193 191 3 194 3 0 0 17 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 42 - G - - - ML 195 194 3 197 3 1 1 16 35 -7.965 -0.021 -6.619 -1.582 -2.803 1.724 -2.189 D 196 194 3 197 3 0 0 16 34 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 43 - c - - - ML 198 197 3 200 3 1 1 15 33 -7.965 -0.021 -6.619 -0.756 0.757 -1.551 0.461 D 199 197 3 200 3 0 0 15 33 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 44 - A - - - ML 201 200 3 203 3 1 1 13 31 -7.965 -0.021 -6.619 1.719 -2.373 -2.005 -1.916 D 202 200 3 203 3 0 0 13 32 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 45 - A - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 1.719 -2.373 -2.005 -1.916 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Rota_CRE ACC RF00501 DESC Rotavirus cis-acting replication element (CRE) LENG 68 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 01:38:13 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00501/CM NSEQ 14 EFFN 2.614746 CKSUM 3397252940 STATS LOCAL MSV -8.5714 0.71906 STATS LOCAL VITERBI -8.9424 0.71906 STATS LOCAL FORWARD -3.3555 0.71906 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.20970 1.73209 1.35470 1.32135 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 0.00000 * 1 2.68914 3.39596 0.14703 3.34444 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 2 2.68037 3.38495 0.14878 3.32915 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 3 0.51954 1.78147 2.34535 1.95898 3 A - - - 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 4 0.60447 2.78460 1.14624 2.60296 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 5 3.05694 1.64007 2.86279 0.35397 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 6 2.31347 2.00835 2.82882 0.34561 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 7 3.11742 2.01353 2.88306 0.26625 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 8 0.29263 2.93128 1.94555 2.85659 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 9 0.29266 2.93115 1.94553 2.85640 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 10 2.73063 2.67422 3.25263 0.18972 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 11 2.73063 2.67422 3.25263 0.18972 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 12 3.32852 0.21041 3.11832 2.21025 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 13 2.17696 3.06100 0.23979 2.93784 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 14 2.75889 0.61976 2.53830 1.14079 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 15 3.11737 2.01352 2.88304 0.26625 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 16 0.75010 2.12450 2.21837 1.20597 16 a - - - 1.38629 1.38629 1.38629 1.38629 0.08045 3.94285 2.84893 1.46634 0.26236 1.09861 0.40547 17 3.02133 1.94218 2.77789 0.29343 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04118 3.90358 3.90358 1.46634 0.26236 0.51270 0.91348 18 3.32387 0.21086 3.11603 2.20942 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 19 1.38338 2.37429 0.71230 1.79773 19 g - - - 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 20 0.63307 2.77553 1.10283 2.59304 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 21 3.11681 2.01348 2.88278 0.26631 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 22 3.11713 2.01351 2.88293 0.26628 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 23 2.85892 0.94758 2.65203 0.72467 23 u - - < 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 24 1.26365 2.65594 0.61201 2.25490 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 25 0.13496 3.36725 3.07894 3.08441 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 26 1.39941 2.72988 0.52629 2.33059 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 27 0.77683 2.50022 1.09057 2.10337 27 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 28 0.40554 2.65526 1.80782 2.31172 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 29 2.73063 2.67422 3.25263 0.18972 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 30 2.83076 3.72586 0.12774 3.30073 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 31 0.76771 2.49993 1.10316 2.10361 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.08045 3.94285 2.84893 1.46634 0.26236 1.09861 0.40547 32 1.70880 2.09482 1.17990 0.94543 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04118 3.90358 3.90358 1.46634 0.26236 0.51270 0.91348 33 1.74639 2.17936 0.96209 1.10748 33 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 34 0.13496 3.36725 3.07894 3.08441 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 35 2.73063 2.67422 3.25263 0.18972 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08045 3.94285 2.84893 1.46634 0.26236 1.09861 0.40547 36 2.02157 3.10571 0.28000 2.70338 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04118 3.90358 3.90358 1.46634 0.26236 0.51270 0.91348 37 0.87074 2.51075 0.97048 2.10991 37 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 38 3.00147 0.17267 3.57742 2.51427 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 39 1.11968 2.10121 1.20074 1.38495 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 40 0.95837 2.08323 1.43170 1.37416 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 41 0.13496 3.36725 3.07894 3.08441 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 42 2.83076 3.72586 0.12774 3.30073 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 43 2.06213 0.78270 2.63387 1.06756 43 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 44 0.13496 3.36725 3.07894 3.08441 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 45 0.13496 3.36725 3.07894 3.08441 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 46 2.03947 2.81134 0.30494 2.62261 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 47 0.30166 3.07149 1.85054 2.86633 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 48 0.30136 3.07317 1.85075 2.86831 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 49 2.81703 1.79628 2.57806 0.35899 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 50 0.13496 3.36725 3.07894 3.08441 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 51 2.44869 3.22853 0.19208 3.02131 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 52 0.34334 2.90916 1.77852 2.70017 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 53 0.29597 2.68862 2.62104 2.15858 53 A - - - 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 54 0.30183 3.07054 1.85042 2.86521 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 55 1.98504 2.70196 0.33502 2.52292 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 56 3.16832 0.25294 2.88676 2.07424 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 57 2.49500 3.29407 0.18000 3.09824 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 58 3.00147 0.17267 3.57742 2.51427 58 C - - - 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 59 3.08533 2.25510 2.74286 0.24203 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 60 3.08874 2.25556 2.74422 0.24165 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 61 0.30084 3.07604 1.85112 2.87170 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 62 2.73063 2.67422 3.25263 0.18972 62 U - - - 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 63 2.19930 3.04551 0.24754 2.79969 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 64 2.82644 1.80862 2.58671 0.35435 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 65 2.83076 3.72586 0.12774 3.30073 65 G - - - 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 66 0.13496 3.36725 3.07894 3.08441 66 A - - - 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 67 3.54341 0.17677 3.22416 2.37172 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.03956 3.94285 3.94285 1.46634 0.26236 1.09861 0.40547 68 3.56647 0.17504 3.23432 2.37590 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.01997 3.92327 * 1.46634 0.26236 0.00000 * //