INFERNAL1/a [1.1.5 | Sep 2023] NAME snoU2-30 ACC RF00493 DESC Small nucleolar RNA U2-30 STATES 214 NODES 61 CLEN 70 W 86 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 03:53:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00493/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 21 EFFN 2.237915 CKSUM 3639084638 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 60.50 NC 59.80 EFP7GF -9.1385 0.71891 ECMLC 0.63789 -5.56214 3.51259 1600000 391884 0.003062 ECMGC 0.42153 -14.48026 -1.15138 1600000 110194 0.003630 ECMLI 0.61560 -3.84162 5.07739 1600000 290864 0.004126 ECMGI 0.42899 -10.05808 2.14542 1600000 75107 0.005326 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 86 106 -6.976 -8.221 -0.075 -4.675 IL 1 1 2 1 4 1 23 88 108 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 25 88 108 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 75 - A - - MR 3 2 3 5 5 1 25 86 106 -7.192 -0.036 -7.008 -7.220 -8.112 1.764 -2.601 -2.210 -2.166 D 4 2 3 5 5 0 19 85 105 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 1 23 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 74 G C - - MP 6 5 3 10 6 2 25 85 105 -9.155 -9.094 -0.020 -7.871 -8.150 -8.546 -4.966 -3.202 -5.090 0.048 -5.548 -4.780 -0.857 -5.346 -4.471 3.688 -4.793 -0.910 -1.236 -4.614 -2.907 -3.963 ML 7 5 3 10 6 1 20 84 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 19 84 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 15 81 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 22 85 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 22 85 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 73 A U - - MP 12 11 6 16 6 2 23 83 103 -9.155 -9.094 -0.020 -7.871 -8.150 -8.546 -3.556 -2.572 -3.650 3.092 -4.290 -5.069 -0.040 -3.813 -3.517 1.353 -4.082 0.999 -0.291 -4.146 -1.933 -2.482 ML 13 11 6 16 6 1 19 82 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 18 82 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 15 80 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 21 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 21 83 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 72 G C - - MP 18 17 6 22 6 2 21 81 101 -9.155 -9.094 -0.020 -7.871 -8.150 -8.546 -4.617 -3.018 -4.693 0.330 -5.381 -4.707 -0.681 -5.046 -4.306 3.593 -4.651 -0.196 -0.981 -4.379 -2.710 -3.580 ML 19 17 6 22 6 1 18 80 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 17 80 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 14 78 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 19 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 19 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 71 C G - - MP 24 23 6 28 4 2 19 79 99 -7.069 -7.276 -0.094 -4.339 -4.238 -4.210 -3.981 -0.429 -2.727 -4.427 3.371 -3.514 -4.014 -0.215 -4.322 -2.209 0.851 -4.312 0.352 -2.856 ML 25 23 6 28 4 1 17 80 100 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 4 1 15 79 99 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 27 23 6 28 4 0 14 78 98 -4.568 -4.250 -2.265 -0.520 IL 28 28 5 28 4 1 19 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 29 29 6 29 3 1 18 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 5 - A - - - ML 30 29 6 32 3 1 18 77 97 -8.036 -0.020 -6.690 1.134 -1.218 -0.607 -0.476 D 31 29 6 32 3 0 13 76 96 -6.531 -1.115 -0.922 IL 32 32 3 32 3 1 17 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - A - - - ML 33 32 3 35 3 1 17 76 96 -8.077 -0.019 -6.731 1.485 -1.284 -1.535 -1.168 D 34 32 3 35 3 0 12 75 95 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 16 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - U - - - ML 36 35 3 38 3 1 16 75 95 -8.077 -0.019 -6.731 -1.697 -1.657 -2.441 1.674 D 37 35 3 38 3 0 11 73 94 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 16 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - G - - - ML 39 38 3 41 3 1 15 74 94 -8.077 -0.019 -6.731 -1.821 -3.077 1.773 -2.464 D 40 38 3 41 3 0 10 72 92 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 15 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 42 41 3 44 3 1 15 73 93 -8.077 -0.019 -6.731 1.764 -2.601 -2.210 -2.166 D 43 41 3 44 3 0 10 71 91 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 14 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - U - - - ML 45 44 3 47 3 1 14 72 92 -8.077 -0.019 -6.731 -1.697 -1.657 -2.441 1.674 D 46 44 3 47 3 0 9 70 90 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 13 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - G - - - ML 48 47 3 50 3 1 13 71 91 -8.077 -0.019 -6.731 -0.955 -1.852 1.406 -0.846 D 49 47 3 50 3 0 8 69 89 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 12 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - A - - - ML 51 50 3 53 3 1 12 70 90 -8.460 -0.017 -6.778 1.214 -1.300 -0.735 -0.570 D 52 50 3 53 3 0 7 68 88 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 11 70 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 70 - A - - MR 54 53 3 56 3 1 11 69 89 -8.460 -0.017 -6.778 1.764 -2.601 -2.210 -2.166 D 55 53 3 56 3 0 6 67 87 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 10 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 69 - G - - MR 57 56 3 59 3 1 11 68 88 -8.460 -0.017 -6.778 -0.571 -2.169 1.470 -1.585 D 58 56 3 59 3 0 5 66 86 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 9 68 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 68 - U - - MR 60 59 3 62 3 1 10 67 87 -8.460 -0.017 -6.778 -1.697 -1.657 -2.441 1.674 D 61 59 3 62 3 0 4 65 85 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 9 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 67 - C - - MR 63 62 3 65 3 1 9 66 86 -8.460 -0.017 -6.778 -2.018 1.691 -2.848 -1.376 D 64 62 3 65 3 0 3 64 84 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 8 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 66 - c - - MR 66 65 3 68 3 1 8 65 85 -8.460 -0.017 -6.778 -0.845 0.780 -1.653 0.494 D 67 65 3 68 3 0 2 63 83 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 7 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 65 - A - - MR 69 68 3 71 3 1 8 64 84 -8.460 -0.017 -6.778 1.764 -2.601 -2.210 -2.166 D 70 68 3 71 3 0 2 62 82 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 6 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 64 - G - - MR 72 71 3 74 3 1 7 63 82 -8.460 -0.017 -6.778 -1.061 -2.524 1.625 -1.934 D 73 71 3 74 3 0 1 61 81 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 6 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 63 - U - - MR 75 74 3 77 3 1 6 62 81 -8.460 -0.017 -6.778 -1.697 -1.657 -2.441 1.674 D 76 74 3 77 3 0 0 60 80 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 5 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 62 - U - - MR 78 77 3 80 3 1 6 61 80 -8.460 -0.017 -6.778 -1.697 -1.657 -2.441 1.674 D 79 77 3 80 3 0 0 59 79 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 4 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 61 - C - - MR 81 80 3 83 3 1 5 60 79 -8.460 -0.017 -6.778 -2.018 1.691 -2.848 -1.376 D 82 80 3 83 3 0 0 58 78 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 4 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 60 - A - - MR 84 83 3 86 3 1 5 59 78 -8.460 -0.017 -6.778 1.764 -2.601 -2.210 -2.166 D 85 83 3 86 3 0 0 57 77 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 3 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 59 - C - - MR 87 86 3 89 3 1 4 58 77 -8.460 -0.017 -6.778 -2.018 1.691 -2.848 -1.376 D 88 86 3 89 3 0 0 56 76 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 2 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 58 - A - - MR 90 89 3 92 3 1 3 57 76 -8.460 -0.017 -6.778 1.764 -2.601 -2.210 -2.166 D 91 89 3 92 3 0 0 55 75 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 2 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 57 - U - - MR 93 92 3 95 3 1 3 56 75 -8.460 -0.017 -6.778 -1.697 -1.657 -2.441 1.674 D 94 92 3 95 3 0 0 54 74 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 56 - C - - MR 96 95 3 98 3 1 2 55 74 -8.460 -0.017 -6.778 -1.545 1.512 -2.380 -0.707 D 97 95 3 98 3 0 0 53 73 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 55 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 55 - U - - MR 99 98 3 101 3 1 2 54 73 -8.460 -0.017 -6.778 -1.275 -1.011 -2.012 1.507 D 100 98 3 101 3 0 0 52 72 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 54 - U - - MR 102 101 3 104 3 1 2 53 72 -8.460 -0.017 -6.778 -0.982 -1.141 -1.418 1.415 D 103 101 3 104 3 0 0 51 71 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 53 - U - - MR 105 104 3 107 3 1 1 52 71 -8.460 -0.017 -6.778 -1.123 -0.711 -1.863 1.409 D 106 104 3 107 3 0 0 50 70 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 52 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 52 - G - - MR 108 107 3 110 3 1 1 51 70 -8.460 -0.017 -6.778 -0.949 -1.843 1.402 -0.833 D 109 107 3 110 3 0 0 49 69 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 51 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 51 - G - - MR 111 110 3 113 3 1 1 50 69 -8.460 -0.017 -6.778 -0.705 -1.924 1.420 -1.163 D 112 110 3 113 3 0 0 48 68 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 50 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 50 - A - - MR 114 113 3 116 3 1 1 49 68 -8.460 -0.017 -6.778 1.291 -1.446 -0.701 -0.811 D 115 113 3 116 3 0 0 47 67 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 49 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 49 - A - - MR 117 116 3 119 3 1 1 48 67 -8.460 -0.017 -6.778 1.764 -2.601 -2.210 -2.166 D 118 116 3 119 3 0 0 46 66 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 48 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 48 - G - - MR 120 119 3 122 3 1 1 47 66 -8.460 -0.017 -6.778 -0.836 -2.359 1.562 -1.773 D 121 119 3 122 3 0 0 45 65 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 47 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 47 - U - - MR 123 122 3 125 3 1 1 46 65 -8.460 -0.017 -6.778 -1.697 -1.657 -2.441 1.674 D 124 122 3 125 3 0 0 44 64 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 46 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 46 - A - - MR 126 125 3 128 3 1 1 45 64 -8.460 -0.017 -6.778 1.068 -0.723 -0.661 -0.588 D 127 125 3 128 3 0 0 43 63 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 45 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 45 - U - - MR 129 128 3 131 3 1 1 44 63 -8.460 -0.017 -6.778 -1.697 -1.657 -2.441 1.674 D 130 128 3 131 3 0 0 42 62 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 44 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 44 - C - - MR 132 131 3 134 3 1 1 43 62 -8.460 -0.081 -4.278 -1.133 1.232 -1.964 -0.091 D 133 131 3 134 3 0 0 41 61 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 43 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 43 - A - - MR 135 134 3 137 3 1 1 42 61 -8.398 -0.018 -6.716 1.540 -1.765 -1.622 -1.081 D 136 134 3 137 3 0 0 40 59 -6.855 -2.033 -0.421 IR 137 137 3 137 3 1 1 42 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 42 - A - - MR 138 137 3 140 3 1 1 41 60 -8.398 -0.018 -6.716 1.392 -1.058 -1.387 -0.963 D 139 137 3 140 3 0 0 39 59 -6.855 -2.033 -0.421 IR 140 140 3 140 3 1 1 41 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 41 - U - - MR 141 140 3 143 3 1 1 40 59 -8.398 -0.046 -5.148 -0.716 -0.640 -1.217 1.214 D 142 140 3 143 3 0 0 38 58 -6.855 -2.033 -0.421 IR 143 143 3 143 3 1 1 40 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 40 - a - - MR 144 143 3 146 5 1 1 39 58 -4.902 -0.078 -6.924 -7.136 -8.028 0.676 -1.417 0.550 -0.828 D 145 143 3 146 5 0 0 37 57 -5.734 -0.509 -3.360 -4.791 -2.786 IR 146 146 3 146 5 1 1 39 59 -2.512 -0.456 -6.023 -4.191 -5.297 0.000 0.000 0.000 0.000 [ MATP 45 ] 13 38 A U - - MP 147 146 3 151 6 2 2 38 57 -9.155 -9.094 -0.020 -7.871 -8.150 -8.546 -3.454 -2.753 -3.501 3.175 -3.837 -4.657 0.242 -3.698 -3.523 1.211 -4.062 -0.026 -0.032 -3.849 -1.610 -1.135 ML 148 146 3 151 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 36 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 37 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 14 37 A U - - MP 153 152 6 157 6 2 2 36 55 -9.155 -9.094 -0.020 -7.871 -8.150 -8.546 -3.544 -1.080 -3.599 3.245 -4.093 -4.852 0.006 -3.794 -3.572 1.263 -4.119 -0.302 -0.251 -4.009 -1.836 -2.529 ML 154 152 6 157 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 34 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 35 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 15 36 A U - - MP 159 158 6 163 6 2 2 34 53 -9.155 -9.094 -0.020 -7.871 -8.150 -8.546 -3.806 -3.028 -3.794 3.379 -4.112 -5.055 0.063 -3.910 -3.819 0.891 -4.357 -0.615 -0.286 -4.259 -1.834 -1.500 ML 160 158 6 163 6 1 1 32 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 32 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 33 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 33 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 16 35 g c - - MP 165 164 6 169 6 2 2 32 51 -9.155 -9.094 -0.020 -7.871 -8.150 -8.546 -2.510 -1.102 -2.613 1.198 -2.843 -3.334 0.874 -3.029 -1.922 2.669 -3.207 0.212 0.671 -1.500 -0.790 -1.758 ML 166 164 6 169 6 1 1 30 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 30 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 31 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 17 34 g c - - MP 171 170 6 175 6 2 2 30 49 -5.932 -9.094 -0.042 -7.871 -8.150 -8.546 -2.196 -0.590 -2.367 1.271 -2.506 -3.047 1.041 -2.727 -1.305 2.340 -2.871 0.379 0.846 -1.874 -0.553 -1.527 ML 172 170 6 175 6 1 1 28 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 26 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 29 49 -2.779 -3.042 -0.636 -4.697 -5.473 -5.134 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 29 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 19 33 U A - - MP 177 176 6 181 6 2 2 27 47 -9.155 -9.094 -0.020 -7.871 -8.150 -8.546 -4.460 -4.291 -4.268 -0.568 -3.154 -4.807 1.179 -3.868 -4.270 -0.351 -4.630 -2.181 3.443 -4.601 -0.824 -3.066 ML 178 176 6 181 6 1 1 27 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 26 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 25 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 27 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 27 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 20 32 U G - - MP 183 182 6 187 4 2 2 25 45 -7.069 -7.276 -0.095 -4.323 -4.327 -4.257 -3.975 -0.569 -2.662 -4.361 1.630 -3.456 -4.018 -0.416 -4.285 -2.251 0.749 -4.389 3.142 -2.877 ML 184 182 6 187 4 1 1 26 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 4 1 1 25 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 186 182 6 187 4 0 0 24 44 -4.568 -4.250 -2.265 -0.520 IL 187 187 5 187 4 1 1 27 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 188 188 6 188 3 1 1 26 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 21 - U - - - ML 189 188 6 191 3 1 1 23 43 -5.416 -0.049 -6.689 -1.618 -1.592 -2.358 1.654 D 190 188 6 191 3 0 0 22 41 -6.537 -1.109 -0.928 IL 191 191 3 191 3 1 1 25 44 -1.509 -0.750 -4.209 0.000 0.000 0.000 0.000 [ MATL 53 ] 23 - U - - - ML 192 191 3 194 3 1 1 22 42 -8.077 -0.019 -6.731 -0.481 -0.766 -1.229 1.182 D 193 191 3 194 3 0 0 20 40 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 24 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 24 - A - - - ML 195 194 3 197 3 1 1 21 40 -8.077 -0.019 -6.731 1.377 -1.247 -1.068 -0.988 D 196 194 3 197 3 0 0 19 39 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 23 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 25 - c - - - ML 198 197 3 200 3 1 1 20 39 -8.077 -0.019 -6.731 -0.670 0.940 -1.063 -0.037 D 199 197 3 200 3 0 0 18 38 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 22 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 26 - U - - - ML 201 200 3 203 3 1 1 19 38 -8.077 -0.019 -6.731 -0.359 -0.911 -0.792 1.078 D 202 200 3 203 3 0 0 17 37 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 21 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 27 - A - - - ML 204 203 3 206 3 1 1 18 37 -4.354 -0.087 -6.731 1.629 -2.128 -1.453 -1.676 D 205 203 3 206 3 0 0 15 35 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 20 39 -1.349 -0.833 -4.437 0.000 0.000 0.000 0.000 [ MATL 58 ] 30 - C - - - ML 207 206 3 209 3 1 1 13 31 -8.077 -0.019 -6.731 -1.542 1.510 -2.376 -0.702 D 208 206 3 209 3 0 0 13 32 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 31 - U - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 -0.678 -1.023 -1.231 1.297 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME snoU2-30 ACC RF00493 DESC Small nucleolar RNA U2-30 LENG 70 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 03:53:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00493/CM NSEQ 21 EFFN 2.704468 CKSUM 3639084638 STATS LOCAL MSV -8.4973 0.71891 STATS LOCAL VITERBI -9.0978 0.71891 STATS LOCAL FORWARD -3.1485 0.71891 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.24353 1.62826 1.56258 1.18493 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 0.00000 * 1 2.68655 3.39990 0.14749 3.33440 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 2 0.51620 2.86255 1.28238 2.67774 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 3 2.48195 3.25553 0.18087 3.13931 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 4 2.95952 0.37142 2.73932 1.64100 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.06926 4.02566 3.01457 1.46634 0.26236 1.09861 0.40547 5 0.56777 2.29555 1.82928 1.76039 5 A - - - 1.38629 1.38629 1.38629 1.38629 0.03755 3.99395 3.99395 1.46634 0.26236 0.54676 0.86470 6 0.31546 2.33779 2.57129 2.32721 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 7 2.76874 2.70596 3.29206 0.18239 7 U - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 8 2.87109 3.77123 0.12205 3.34570 8 G - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 9 0.12928 3.40734 3.11523 3.12869 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 10 2.76874 2.70596 3.29206 0.18239 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 11 2.17850 2.81138 0.35875 2.05481 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 12 0.51070 2.35918 1.92719 1.83339 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 13 0.44016 2.67372 1.67198 2.31066 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 14 0.36772 2.83615 1.71767 2.66561 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 15 0.30706 2.86955 2.02803 2.57608 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 16 1.64989 2.05235 0.67150 1.78051 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 17 1.51409 1.90296 0.80990 1.68221 17 g - - < 1.38629 1.38629 1.38629 1.38629 0.07638 2.88799 4.02566 0.55125 0.85856 1.09861 0.40547 18 3.15389 2.04920 2.93049 0.25476 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 19 3.08295 1.66050 2.89838 0.34387 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.06987 4.02566 3.00307 1.46634 0.26236 1.09861 0.40547 20 2.70829 2.65562 3.22949 0.19417 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06058 3.21039 3.99336 0.75075 0.63868 0.54193 0.87138 21 1.77830 1.97373 2.30464 0.52367 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 22 0.39304 2.30674 2.18958 2.17642 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 23 1.93912 0.67849 2.17267 1.44853 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 24 1.68201 2.08663 1.96363 0.59866 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 25 0.21997 3.01742 2.48820 2.72619 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.08991 2.68625 4.02566 0.87952 0.53611 1.09861 0.40547 26 2.64818 0.28456 3.23501 1.98402 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 27 1.94379 2.18788 2.31333 0.43734 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 28 2.21865 3.07792 0.24095 2.82495 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 29 0.28857 3.11781 1.88604 2.90514 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 30 1.84016 0.92781 1.70079 1.33465 34 c - - > 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 31 2.03885 0.74563 1.85213 1.43346 35 c - - > 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 32 2.99359 2.28930 2.68445 0.24808 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 33 2.88618 1.82068 2.64155 0.34102 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 34 2.75129 1.99777 2.48746 0.33213 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.14898 3.01457 2.41527 0.61603 0.77671 1.09861 0.40547 35 0.89763 2.46251 0.96861 2.05857 40 a - - - 1.38629 1.38629 1.38629 1.38629 0.03921 3.95149 3.95149 1.46634 0.26236 1.16362 0.37448 36 1.97437 1.87569 2.29745 0.49859 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97407 3.97407 1.46634 0.26236 1.76075 0.18864 37 0.37846 2.16530 2.45448 2.16750 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97407 3.97407 1.46634 0.26236 1.76075 0.18864 38 0.27837 2.73138 2.63868 2.24055 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.03832 3.97407 3.97407 1.46634 0.26236 0.42134 1.06760 39 2.30902 0.47649 2.89968 1.49326 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 40 2.76874 2.70596 3.29206 0.18239 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 41 0.61100 1.90551 1.87338 1.86536 46 A - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 42 2.76874 2.70596 3.29206 0.18239 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 43 2.06511 3.19247 0.26002 2.79540 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 44 0.12928 3.40734 3.11523 3.12869 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 45 0.45568 2.47304 1.90019 2.02409 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 46 1.96078 2.84226 0.35635 2.29533 51 G - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 47 2.17339 2.80441 0.36193 2.04535 52 G - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 48 2.29616 1.93069 2.81340 0.36484 53 U - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 49 2.19620 2.28666 2.46278 0.35386 54 U - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 50 2.41645 2.16834 2.93133 0.29697 55 U - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 51 2.65114 0.28338 3.23787 1.98818 56 C - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 52 2.76874 2.70596 3.29206 0.18239 57 U - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 53 0.12928 3.40734 3.11523 3.12869 58 A - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 54 3.04994 0.16464 3.62532 2.55361 59 C - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 55 0.12928 3.40734 3.11523 3.12869 60 A - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 56 3.04994 0.16464 3.62532 2.55361 61 C - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 57 2.76874 2.70596 3.29206 0.18239 62 U - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 58 2.76874 2.70596 3.29206 0.18239 63 U - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 59 2.24398 3.32305 0.21800 2.92253 64 G - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 60 0.12928 3.40734 3.11523 3.12869 65 A - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 61 2.07250 0.79714 2.64506 1.04267 66 c - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 62 3.04994 0.16464 3.62532 2.55361 67 C - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 63 2.76874 2.70596 3.29206 0.18239 68 U - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 64 1.85575 3.04369 0.32123 2.64860 69 G - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 65 0.12928 3.40734 3.11523 3.12869 70 A - - - 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 66 2.12952 2.90097 0.27399 2.72118 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 67 3.35275 0.23688 3.08623 2.03825 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 68 2.89670 1.88385 2.66408 0.32417 73 U - - > 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 69 3.55590 0.17267 3.25388 2.39244 74 C - - > 1.38629 1.38629 1.38629 1.38629 0.03636 4.02566 4.02566 1.46634 0.26236 1.09861 0.40547 70 0.12928 3.40734 3.11523 3.12869 75 A - - : 1.38629 1.38629 1.38629 1.38629 0.01834 4.00765 * 1.46634 0.26236 0.00000 * //