INFERNAL1/a [1.1.4 | Dec 2020] NAME ctRNA_p42d ACC RF00489 DESC ctRNA STATES 142 NODES 36 CLEN 46 W 61 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:42:18 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 4.409180 CKSUM 420918927 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 50.90 NC 49.70 EFP7GF -13.5119 0.71965 ECMLC 0.67577 -5.14436 3.79608 1600000 504713 0.002378 ECMGC 0.45331 -16.61231 -2.78246 1600000 211234 0.001894 ECMLI 0.67674 -3.71757 4.73289 1600000 365440 0.003284 ECMGI 0.49232 -12.49997 -0.42156 1600000 152948 0.002615 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 61 80 -7.717 -7.924 -0.031 -6.338 IL 1 1 2 1 4 1 7 66 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 7 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 7 61 80 -8.690 -0.012 -7.344 1.902 -3.802 -3.308 -3.486 D 4 2 3 5 3 0 3 60 79 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 6 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 6 60 79 -8.690 -0.100 -3.958 -2.990 -4.377 1.907 -3.730 D 7 5 3 8 3 0 3 59 78 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 6 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 7 59 78 -8.604 -0.013 -7.258 1.564 -2.358 -0.770 -1.936 D 10 8 3 11 3 0 2 58 76 -7.093 -2.606 -0.272 IL 11 11 3 11 3 1 5 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 6 58 76 -8.960 -0.012 -7.278 1.458 -2.233 -0.421 -1.775 D 13 11 3 14 3 0 2 57 75 -6.245 -0.431 -2.028 IL 14 14 3 14 3 1 4 59 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 49 - C - - MR 15 14 3 17 3 1 5 57 75 -9.043 -0.012 -7.361 -2.324 1.652 -3.205 -0.867 D 16 14 3 17 3 0 0 56 74 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 4 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 48 - G - - MR 18 17 3 20 3 1 5 56 74 -9.043 -0.012 -7.361 -2.990 -4.377 1.907 -3.730 D 19 17 3 20 3 0 0 55 73 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 3 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 47 - U - - MR 21 20 3 23 3 1 4 55 73 -9.043 -0.012 -7.361 -2.854 -2.629 -3.631 1.856 D 22 20 3 23 3 0 0 54 72 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 3 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 46 - U - - MR 24 23 3 26 3 1 4 54 72 -9.043 -0.012 -7.361 -2.854 -2.629 -3.631 1.856 D 25 23 3 26 3 0 0 53 71 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 2 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 45 - U - - MR 27 26 3 29 3 1 4 53 71 -9.043 -0.012 -7.361 -2.854 -2.629 -3.631 1.856 D 28 26 3 29 3 0 0 51 70 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 2 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 44 - U - - MR 30 29 3 32 3 1 3 52 70 -9.043 -0.012 -7.361 -2.854 -2.629 -3.631 1.856 D 31 29 3 32 3 0 0 50 69 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 1 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 43 - C - - MR 33 32 3 35 3 1 3 51 69 -9.043 -0.012 -7.361 -3.433 1.881 -4.199 -2.556 D 34 32 3 35 3 0 0 49 68 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 42 - U - - MR 36 35 3 38 3 1 2 50 68 -9.043 -0.012 -7.361 -2.854 -2.629 -3.631 1.856 D 37 35 3 38 3 0 0 48 67 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 1 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 41 - U - - MR 39 38 3 41 3 1 1 49 67 -9.043 -0.095 -4.013 -2.854 -2.629 -3.631 1.856 D 40 38 3 41 3 0 0 47 66 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 1 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 40 - U - - MR 42 41 3 44 3 1 2 48 66 -8.960 -0.012 -7.278 -2.697 -2.495 -3.471 1.839 D 43 41 3 44 3 0 0 46 65 -7.197 -2.375 -0.321 IR 44 44 3 44 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 39 - U - - MR 45 44 3 47 5 1 1 47 65 -7.665 -0.026 -7.481 -7.693 -8.585 -2.697 -2.495 -3.471 1.839 D 46 44 3 47 5 0 0 46 64 -5.858 -0.460 -3.485 -4.915 -2.910 IR 47 47 3 47 5 1 1 48 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 5 38 a u - - MP 48 47 3 52 6 2 2 46 64 -9.451 -9.390 -0.067 -8.167 -8.446 -4.791 -4.093 -2.903 -4.148 2.408 -5.171 -5.393 -0.675 -4.436 -4.073 2.117 -4.578 2.138 -0.885 -4.499 -2.597 -2.964 ML 49 47 3 52 6 1 1 45 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 1 45 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 43 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 46 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 46 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 6 37 G C - - MP 54 53 6 58 6 2 2 44 62 -9.401 -9.340 -0.017 -8.117 -8.397 -8.792 -4.843 -3.205 -4.884 0.192 -5.910 -5.007 -1.073 -5.311 -4.574 3.520 -4.916 0.968 -1.336 -4.619 -3.100 -3.758 ML 55 53 6 58 6 1 1 43 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 43 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 41 60 -9.839 -8.537 -1.085 -5.016 -5.034 -1.109 IL 58 58 5 58 6 1 1 44 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 44 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 7 36 G C - - MP 60 59 6 64 6 2 2 42 60 -9.451 -9.390 -0.017 -8.167 -8.446 -8.841 -6.115 -3.774 -6.500 -0.786 -7.114 -5.200 -2.142 -6.732 -5.121 3.846 -5.385 -1.556 -2.504 -5.334 -4.280 -5.358 ML 61 59 6 64 6 1 1 41 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 41 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 42 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 42 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 8 35 C G - - MP 66 65 6 70 6 2 2 40 58 -9.451 -9.390 -0.017 -8.167 -8.446 -8.841 -5.010 -5.058 -4.612 -1.194 -3.173 -4.952 3.476 -4.011 -4.652 -1.054 -4.903 -3.077 0.339 -5.008 1.046 -3.462 ML 67 65 6 70 6 1 1 39 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 39 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 40 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 40 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 9 34 U G - - MP 72 71 6 76 6 2 2 38 56 -9.451 -9.390 -0.017 -8.167 -8.446 -8.841 -5.026 -5.106 -4.611 -1.348 -3.184 -4.930 1.128 -4.025 -4.668 -1.240 -4.905 -3.220 1.943 -5.024 3.096 -3.502 ML 73 71 6 76 6 1 1 37 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 37 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 38 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 38 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 10 33 U G - - MP 78 77 6 82 6 2 2 36 54 -9.451 -9.390 -0.017 -8.167 -8.446 -8.841 -5.204 -5.306 -4.713 -1.543 -3.218 -4.981 1.088 -4.080 -4.780 -1.453 -4.983 -3.444 1.446 -5.162 3.305 -3.604 ML 79 77 6 82 6 1 1 35 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 35 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 36 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 11 32 C G - - MP 84 83 6 88 6 2 2 34 52 -9.451 -9.390 -0.017 -8.167 -8.446 -8.841 -6.161 -6.203 -5.553 -2.373 -4.012 -5.751 3.848 -4.994 -5.710 -2.283 -5.741 -4.235 -0.724 -6.118 -1.814 -4.515 ML 85 83 6 88 6 1 1 33 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 33 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 34 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 34 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 12 31 C G - - MP 90 89 6 94 4 2 2 32 50 -7.717 -2.233 -0.377 -6.338 -6.161 -6.203 -5.553 -2.373 -4.012 -5.751 3.848 -4.994 -5.710 -2.283 -5.741 -4.235 -0.724 -6.118 -1.814 -4.515 ML 91 89 6 94 4 1 1 32 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 31 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 30 48 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 33 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 31 49 -2.263 -0.397 -4.963 0.000 0.000 0.000 0.000 [ MATL 24 ] 13 - A - - - ML 96 95 6 98 3 1 1 29 48 -8.690 -0.012 -7.344 1.043 -2.174 0.483 -1.645 D 97 95 6 98 3 0 0 28 47 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 14 - C - - - ML 99 98 3 101 3 1 1 28 47 -9.043 -0.146 -3.403 -1.870 1.446 -2.778 -0.223 D 100 98 3 101 3 0 0 27 46 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 29 - u - - MR 102 101 3 104 5 1 1 27 46 -7.617 -0.027 -7.433 -7.645 -8.536 -0.723 0.497 -0.930 0.544 D 103 101 3 104 5 0 0 26 45 -6.088 -0.382 -3.714 -5.145 -3.140 IR 104 104 3 104 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 15 28 G U - - MP 105 104 3 109 6 2 2 26 45 -9.451 -9.390 -0.073 -8.167 -4.618 -8.841 -4.437 -3.080 -4.651 1.635 -6.296 -6.911 -1.763 -4.677 -4.208 0.313 -4.800 3.396 -1.889 -5.683 -3.661 -3.262 ML 106 104 3 109 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 16 27 A U - - MP 111 110 6 115 6 2 2 24 43 -9.395 -9.334 -0.017 -8.111 -8.391 -8.786 -4.186 -2.991 -4.326 3.144 -5.540 -6.292 -1.174 -4.450 -4.046 0.701 -4.656 2.004 -1.327 -5.111 -3.052 -3.040 ML 112 110 6 115 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 23 41 -7.624 -6.353 -0.823 -6.332 -1.465 -4.545 -0.295 -0.562 -0.927 0.987 D 114 110 6 115 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 17 26 C G - - MP 117 116 6 121 6 2 2 22 41 -9.451 -9.390 -0.017 -8.167 -8.446 -8.841 -6.161 -6.203 -5.553 -2.373 -4.012 -5.751 3.848 -4.994 -5.710 -2.283 -5.741 -4.235 -0.724 -6.118 -1.814 -4.515 ML 118 116 6 121 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 18 25 G C - - MP 123 122 6 127 4 2 2 20 39 -7.717 -2.262 -0.369 -6.338 -4.928 -3.276 -4.937 0.039 -5.682 -4.801 -0.929 -5.454 -4.671 3.613 -4.943 -1.018 -1.233 -0.362 -2.948 -3.903 ML 124 122 6 127 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 20 38 -1.489 -1.901 -1.411 0.000 0.000 0.000 0.000 [ MATL 31 ] 19 - G - - - ML 129 128 6 131 3 1 1 16 34 -8.376 -0.015 -7.030 -2.426 -3.757 1.859 -3.138 D 130 128 6 131 3 0 0 15 33 -8.171 -0.274 -2.562 IL 131 131 3 131 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 20 - C - - - ML 132 131 3 134 3 1 1 14 33 -8.690 -0.012 -7.344 -2.139 1.583 -3.036 -0.608 D 133 131 3 134 3 0 0 15 33 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 21 - a - - - ML 135 134 3 137 3 1 1 13 31 -8.690 -0.012 -7.344 0.609 -1.350 0.322 -0.266 D 136 134 3 137 3 0 0 13 32 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 22 - A - - - ML 138 137 3 140 2 1 1 1 1 * 0.000 1.577 -2.042 -2.075 -0.900 D 139 137 3 140 2 0 0 0 0 * 0.000 IL 140 140 3 140 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 35 ] - - - - - - E 141 140 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME ctRNA_p42d ACC RF00489 DESC ctRNA LENG 46 MAXL 117 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:42:18 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 10 EFFN 5.385742 CKSUM 420918927 STATS LOCAL MSV -7.0874 0.71965 STATS LOCAL VITERBI -8.0054 0.71965 STATS LOCAL FORWARD -3.6299 0.71965 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.85552 1.40910 1.20815 1.20226 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 0.00000 * 1 0.05197 4.27919 3.92094 4.07638 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 2 3.69022 4.67408 0.05048 4.20470 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.08874 4.43733 2.61602 1.46634 0.26236 1.09861 0.40547 3 0.27222 3.20437 1.93194 2.94002 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.02552 4.37411 4.37411 1.46634 0.26236 2.10168 0.13039 4 0.34367 3.12045 1.67338 2.82869 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.02552 4.37411 4.37411 1.46634 0.26236 0.28038 1.40854 5 1.02124 3.30795 0.58410 3.08670 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.09468 4.43733 2.54456 1.46634 0.26236 1.09861 0.40547 6 2.61725 3.53031 0.14655 3.38076 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.02567 4.36832 4.36832 1.46634 0.26236 0.26337 1.46299 7 3.27077 4.20892 0.07099 4.15467 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 8 3.53777 0.31391 3.37570 1.57917 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 9 3.64198 2.05938 3.50734 0.20298 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 10 3.73555 2.08317 3.61612 0.19271 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 11 4.28411 0.07935 4.19578 3.04841 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 12 4.28623 0.07927 4.19706 3.04885 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 13 0.63246 3.09570 1.02317 2.74851 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 14 2.86837 0.34730 3.51355 1.57588 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 15 1.60551 3.95596 0.28293 3.63074 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.10315 4.43733 2.45131 1.46634 0.26236 1.09861 0.40547 16 0.52407 3.68407 1.05231 3.39206 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.02589 4.36007 4.36007 1.46634 0.26236 0.24254 1.53541 17 4.26700 0.07996 4.18540 3.04486 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 18 2.77474 3.51324 0.19552 2.46006 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.26060 4.43733 1.52516 1.46634 0.26236 1.09861 0.40547 19 3.30913 4.25674 0.07548 3.81745 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03024 4.20696 4.20696 1.46634 0.26236 0.10320 2.32222 20 3.07293 0.25551 3.70171 1.86746 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 21 0.94957 2.40850 1.13572 1.59973 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 22 0.26068 2.95051 2.98955 2.06476 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.26060 1.52516 4.43733 0.48373 0.95836 1.09861 0.40547 23 3.55031 0.16164 3.31417 2.47490 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 24 3.23328 4.20319 0.07696 3.92741 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 25 3.40169 2.37929 3.37968 0.17434 27 U - - > 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 26 3.84880 2.63191 3.76649 0.12373 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.12857 4.43733 2.21805 1.46634 0.26236 1.09861 0.40547 27 1.97680 1.00142 2.05809 1.00394 29 c - - - 1.38629 1.38629 1.38629 1.38629 0.29950 1.40358 4.33530 0.10340 2.32042 0.19670 1.72283 28 3.32090 4.35157 0.06808 4.08583 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 29 3.32044 4.35078 0.06813 4.08498 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 30 1.73225 3.76605 0.26189 3.49401 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 31 1.37778 3.66044 0.37263 3.40457 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 32 2.55462 3.53148 0.15522 3.30247 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 33 4.29082 0.08579 4.08666 2.96174 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.09468 4.43733 2.54456 1.46634 0.26236 1.09861 0.40547 34 3.60750 0.29753 3.36239 1.63180 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.02567 4.36832 4.36832 1.46634 0.26236 0.26337 1.46299 35 3.33010 1.31766 3.11610 0.42753 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.08874 4.43733 2.61602 1.46634 0.26236 1.09861 0.40547 36 3.50794 3.33176 4.04898 0.08679 39 U - - : 1.38629 1.38629 1.38629 1.38629 0.02552 4.37411 4.37411 1.46634 0.26236 2.10168 0.13039 37 3.50794 3.33176 4.04898 0.08679 40 U - - : 1.38629 1.38629 1.38629 1.38629 0.02552 4.37411 4.37411 1.46634 0.26236 0.28038 1.40854 38 3.61656 3.42627 4.15944 0.07796 41 U - - : 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 39 3.61656 3.42627 4.15944 0.07796 42 U - - : 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 40 4.03973 0.06343 4.53473 3.40732 43 C - - : 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 41 3.61656 3.42627 4.15944 0.07796 44 U - - : 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 42 3.61656 3.42627 4.15944 0.07796 45 U - - : 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 43 3.61656 3.42627 4.15944 0.07796 46 U - - : 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 44 3.61656 3.42627 4.15944 0.07796 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 45 3.69022 4.67408 0.05048 4.20470 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.02394 4.43733 4.43733 1.46634 0.26236 1.09861 0.40547 46 3.21279 0.20933 3.82436 2.06520 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.01204 4.42543 * 1.46634 0.26236 0.00000 * //