INFERNAL1/a [1.1.5 | Sep 2023] NAME HIV_FE ACC RF00480 DESC HIV Ribosomal frameshift signal STATES 160 NODES 36 CLEN 52 W 65 ALPH RNA RF no CONS yes MAP yes DATE Mon Aug 12 11:38:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3DNew/RF00480/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 147 EFFN 6.634918 CKSUM 2402782894 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 47.40 NC 44.90 EFP7GF -14.3461 0.71943 ECMLC 0.49848 -8.30486 4.46456 1600000 697590 0.001720 ECMGC 0.52556 -13.04391 -0.14105 1600000 352449 0.001135 ECMLI 0.49367 -6.91209 5.38756 1600000 520246 0.002307 ECMGI 0.48892 -11.19121 1.81491 1600000 231044 0.001731 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 65 84 -8.172 -8.379 -0.040 -5.580 IL 1 1 2 1 4 1 1 70 89 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 3 65 84 -9.112 -0.009 -7.766 -1.651 -2.147 -2.657 1.721 D 4 2 3 5 3 0 0 64 83 -6.483 -1.996 -0.438 IL 5 5 3 5 3 1 1 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 2 64 83 -9.112 -0.014 -6.962 -1.958 -2.402 -3.230 1.785 D 7 5 3 8 3 0 0 63 82 -6.483 -1.996 -0.438 IL 8 8 3 8 3 1 1 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 2 63 82 -9.107 -0.009 -7.761 -3.037 -2.462 -3.790 1.858 D 10 8 3 11 3 0 0 62 81 -6.562 -2.075 -0.411 IL 11 11 3 11 3 1 1 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 1 62 81 -9.107 -0.020 -6.387 -2.324 -2.235 -2.359 1.763 D 13 11 3 14 3 0 0 61 80 -6.562 -2.075 -0.411 IL 14 14 3 14 3 1 1 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 2 61 80 -9.096 -0.009 -7.750 -1.920 -1.991 -2.707 1.736 D 16 14 3 17 3 0 0 60 79 -6.718 -2.231 -0.363 IL 17 17 3 17 3 1 1 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 2 60 79 -9.096 -0.009 -7.750 -2.975 -2.370 -3.727 1.850 D 19 17 3 20 3 0 0 59 78 -6.718 -1.459 -0.674 IL 20 20 3 20 3 1 1 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 5 1 1 59 78 -8.136 -0.058 -5.034 -8.164 -9.056 1.806 -2.399 -2.612 -2.735 D 22 20 3 23 5 0 0 58 76 -5.141 -0.681 -4.402 -2.777 -2.690 IL 23 23 3 23 5 1 1 59 78 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 52 g u - - MP 24 23 3 28 6 2 2 58 77 -9.677 -9.616 -0.014 -8.393 -8.673 -9.068 -1.985 0.087 -3.679 0.846 -3.794 -1.871 0.775 -1.570 -1.426 1.280 -1.042 2.413 -0.182 -2.452 -1.235 -1.666 ML 25 23 3 28 6 1 1 56 75 -6.674 -7.020 -1.734 -0.676 -6.870 -4.399 0.065 -0.817 0.641 -0.274 MR 26 23 3 28 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 3 28 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 1 58 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 51 g u - - MP 30 29 6 34 6 2 2 56 75 -9.677 -9.616 -0.014 -8.393 -8.673 -9.068 -3.074 -0.898 -4.037 0.913 -4.637 -3.162 0.035 -3.679 -1.819 2.099 -1.834 2.607 -0.572 -3.399 -1.969 -2.455 ML 31 29 6 34 6 1 1 54 73 -6.674 -7.020 -1.734 -0.676 -6.870 -4.399 0.933 -0.801 -0.539 -0.270 MR 32 29 6 34 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 1 56 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 50 G C - - MP 36 35 6 40 6 2 2 54 73 -9.677 -9.616 -0.014 -8.393 -8.673 -9.068 -3.235 -0.775 -3.253 0.901 -2.845 -3.965 0.300 -3.755 -1.113 3.063 -2.110 0.070 0.085 -3.241 -1.457 -2.355 ML 37 35 6 40 6 1 1 52 71 -6.674 -7.020 -1.734 -0.676 -6.870 -4.399 0.065 -0.817 0.641 -0.274 MR 38 35 6 40 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 54 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 49 A U - - MP 42 41 6 46 6 2 2 52 71 -9.677 -9.616 -0.014 -8.393 -8.673 -9.068 -4.864 2.435 -5.036 3.071 -6.634 -7.663 -2.220 -5.092 -4.651 -0.138 -5.298 -0.898 -2.314 -6.138 -4.076 -3.676 ML 43 41 6 46 6 1 1 50 69 -6.674 -7.020 -1.734 -0.676 -6.870 -4.399 0.933 -0.801 -0.539 -0.270 MR 44 41 6 46 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 52 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 48 A U - - MP 48 47 6 52 6 2 2 50 69 -9.677 -9.616 -0.023 -6.785 -8.673 -9.068 -4.887 -3.580 -5.057 3.493 -6.837 -7.798 -2.341 -5.121 -4.670 -0.116 -5.320 1.600 -2.383 -6.186 -4.205 -3.689 ML 49 47 6 52 6 1 1 48 67 -6.674 -7.020 -1.734 -0.676 -6.870 -4.399 0.933 -0.801 -0.539 -0.270 MR 50 47 6 52 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 50 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 13 47 A U - - MP 54 53 6 58 6 2 2 48 67 -9.668 -9.608 -0.017 -7.705 -8.664 -9.059 -4.787 -3.514 -4.942 3.383 -6.532 -7.308 -2.068 -5.042 -4.604 0.313 -5.237 1.751 -2.143 -5.905 -3.940 -2.820 ML 55 53 6 58 6 1 1 47 65 -6.798 -7.144 -1.858 -0.606 -6.994 -4.523 0.297 -0.807 0.435 -0.238 MR 56 53 6 58 6 1 1 47 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 48 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 14 46 a u - - MP 60 59 6 64 4 2 2 46 65 -7.960 -9.206 -0.037 -5.659 -1.902 0.295 -2.110 2.086 -2.129 -2.299 1.081 -1.273 -2.149 1.165 -2.677 -0.093 0.945 -2.014 -0.353 -0.862 ML 61 59 6 64 4 1 1 45 64 -3.447 -5.571 -0.859 -1.574 1.055 -0.925 -0.670 -0.383 MR 62 59 6 64 4 1 1 45 64 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 0 43 62 -12.737 -14.007 -2.036 -0.404 IL 64 64 5 64 4 1 1 45 64 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 45 - A - - MR 66 65 6 68 3 1 1 44 63 -9.448 -0.017 -6.597 1.942 -4.527 -3.994 -4.245 D 67 65 6 68 3 0 0 43 61 -6.679 -1.128 -0.909 IR 68 68 3 68 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 44 - A - - MR 69 68 3 71 3 1 1 43 62 -9.457 -0.009 -7.775 1.849 -2.774 -2.941 -3.042 D 70 68 3 71 3 0 0 41 60 -6.530 -1.327 -0.760 IR 71 71 3 71 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 43 - G - - MR 72 71 3 74 5 1 1 42 61 -8.152 -0.019 -7.967 -8.180 -9.071 -0.012 -1.534 1.233 -1.678 D 73 71 3 74 5 0 0 41 59 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 42 u g - - MP 75 74 3 79 6 2 2 41 60 -9.702 -9.641 -0.014 -8.418 -8.698 -9.093 -3.162 -3.277 -3.084 0.005 -2.804 -4.034 1.297 -3.330 -3.305 0.050 -1.541 -1.643 1.144 -2.462 2.893 -1.822 ML 76 74 3 79 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 41 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 41 c g - - MP 81 80 6 85 6 2 2 39 58 -9.702 -9.641 -0.014 -8.418 -8.698 -9.093 -2.516 -2.665 -1.847 0.499 -0.890 -3.512 2.384 -2.871 -2.720 0.457 -1.788 -1.123 1.195 -2.831 1.590 -1.838 ML 82 80 6 85 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 40 u a - - MP 87 86 6 91 6 2 2 37 56 -9.702 -9.641 -0.014 -8.418 -8.698 -9.093 -2.586 -2.808 -2.827 0.336 -1.821 -3.668 1.074 -3.040 -2.869 0.292 -3.430 -1.279 2.986 -0.893 -0.001 -1.430 ML 88 86 6 91 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 39 G C - - MP 93 92 6 97 6 2 2 35 54 -9.702 -9.641 -0.014 -8.418 -8.698 -9.093 -4.877 -1.948 -4.806 0.131 -5.796 -4.881 -0.913 -5.434 -2.922 3.640 -5.036 -0.992 -1.186 -2.358 -2.934 -3.776 ML 94 92 6 97 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 38 G C - - MP 99 98 6 103 6 2 2 33 52 -9.702 -9.641 -0.014 -8.418 -8.698 -9.093 -6.409 -4.020 -6.830 -1.040 -7.763 -5.461 -2.624 -7.137 -5.392 3.843 -5.655 -0.666 -2.912 -5.598 -4.788 -5.689 ML 100 98 6 103 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 37 C G - - MP 105 104 6 109 6 2 2 31 50 -9.702 -9.641 -0.014 -8.418 -8.698 -9.093 -5.842 -5.965 -5.295 -2.090 -3.734 -5.530 3.727 -4.627 -5.372 -1.982 -5.539 -4.067 0.038 -5.762 -0.211 -4.166 ML 106 104 6 109 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 36 C G - - MP 111 110 6 115 6 2 2 29 48 -9.702 -9.641 -0.014 -8.418 -8.698 -9.093 -7.958 -8.038 -7.027 -4.280 -4.669 -3.575 3.951 -7.100 -7.693 -4.154 -7.000 -6.150 -2.775 -8.009 -3.499 -6.525 ML 112 110 6 115 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 35 U A - - MP 117 116 6 121 6 2 2 27 46 -9.702 -9.641 -0.014 -8.418 -8.698 -9.093 -6.382 -3.006 -6.294 -2.618 -4.995 -6.895 -0.938 -5.969 -6.246 -2.453 -6.703 -4.337 3.869 -6.499 -2.378 -4.501 ML 118 116 6 121 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 34 u a - - MP 123 122 6 127 6 2 2 25 44 -9.702 -9.641 -0.014 -8.418 -8.698 -9.093 -3.600 -3.617 -3.663 -0.016 -2.614 -4.428 1.569 -3.550 -3.658 0.291 -4.162 -1.713 2.360 -2.515 2.128 -2.618 ML 124 122 6 127 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 33 C G - - MP 129 128 6 133 6 2 2 23 42 -9.702 -9.641 -0.014 -8.418 -8.698 -9.093 -5.527 -5.520 -5.320 -1.739 -1.864 -5.800 3.751 -5.039 -5.411 -1.597 -2.711 -3.510 -0.196 -5.681 -1.697 -4.279 ML 130 128 6 133 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 25 32 C G - - MP 135 134 6 139 4 2 2 21 40 -8.172 -8.379 -0.023 -6.793 -7.009 -7.034 -6.477 -3.275 -2.794 -6.682 3.913 -6.408 -6.853 -3.141 -3.844 -5.073 -2.020 -7.135 -2.724 -5.713 ML 136 134 6 139 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 26 - c - - - ML 141 140 6 143 3 1 1 18 36 -9.128 -0.009 -7.782 0.279 0.744 -1.715 -0.308 D 142 140 6 143 3 0 0 18 36 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 27 - A - - - ML 144 143 3 146 3 1 1 17 35 -9.128 -0.009 -7.782 1.100 -1.179 -0.296 -0.736 D 145 143 3 146 3 0 0 17 35 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 28 - C - - - ML 147 146 3 149 3 1 1 15 34 -9.128 -0.009 -7.782 -2.724 1.797 -3.052 -1.988 D 148 146 3 149 3 0 0 16 34 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - A - - - ML 150 149 3 152 3 1 1 14 32 -9.128 -0.009 -7.782 1.771 -2.629 -2.092 -2.385 D 151 149 3 152 3 0 0 15 33 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - A - - - ML 153 152 3 155 3 1 1 12 31 -9.128 -0.009 -7.782 1.581 -2.195 -0.996 -1.792 D 154 152 3 155 3 0 0 13 32 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - G - - - ML 156 155 3 158 2 1 1 1 1 * 0.000 -0.402 -1.852 1.376 -1.433 D 157 155 3 158 2 0 0 0 0 * 0.000 IL 158 158 3 158 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 35 ] - - - - - - E 159 158 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME HIV_FE ACC RF00480 DESC HIV Ribosomal frameshift signal LENG 52 MAXL 121 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Aug 12 11:38:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 147 EFFN 9.972565 CKSUM 2402782894 STATS LOCAL MSV -7.2877 0.71943 STATS LOCAL VITERBI -8.1914 0.71943 STATS LOCAL FORWARD -3.8934 0.71943 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42030 1.53262 1.34676 1.26477 1.38629 1.38629 1.38629 1.38629 0.03022 4.71400 3.87281 1.46634 0.26236 0.00000 * 1 2.69150 3.18688 3.47857 0.15074 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.01832 4.70210 4.70210 1.46634 0.26236 1.46305 0.26335 2 2.90791 3.37087 3.97122 0.11406 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02191 4.70210 4.37412 1.46634 0.26236 1.46305 0.26335 3 3.86246 3.32424 4.38204 0.07205 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.01838 4.69857 4.69857 1.46634 0.26236 1.54911 0.23881 4 3.34228 3.23353 3.13731 0.12576 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.02610 4.69857 4.09522 1.46634 0.26236 1.54911 0.23881 5 2.93992 3.01037 3.50589 0.14175 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.01853 4.69100 4.69100 1.46634 0.26236 1.71119 0.19925 6 3.81622 3.24599 4.33399 0.07694 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.01853 4.69100 4.69100 1.46634 0.26236 0.91530 0.51148 7 0.10630 3.15824 3.45647 3.61905 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.01832 4.70210 4.70210 1.46634 0.26236 0.62186 0.76991 8 1.61962 1.97457 0.55045 2.44743 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 9 1.87613 2.86607 0.30408 2.95472 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 10 1.88681 2.65435 0.35598 2.55596 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 11 0.09826 4.46535 2.72478 4.10293 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 12 0.30090 4.53647 1.45535 4.14634 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 13 0.37278 4.41228 1.28320 3.82107 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 14 0.85124 1.77312 1.58273 1.62000 14 a - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 15 3.12979 2.05588 2.62198 0.28020 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 16 2.35897 0.87168 2.20741 0.97486 16 c - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 17 2.40475 1.88480 2.31412 0.41703 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 18 2.77116 3.78869 0.13087 3.28463 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 19 3.66973 4.75223 0.04429 4.68759 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 20 4.30757 0.14675 4.19686 2.22583 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 21 5.49059 0.02040 5.52179 4.41675 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 22 4.17058 3.78386 4.83933 0.04719 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 23 2.95490 1.76375 2.57282 0.35640 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 24 4.03247 0.14130 3.36437 2.53250 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 25 5.00333 0.04363 4.37436 3.75572 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 26 1.18610 0.79440 2.80622 1.70207 26 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 27 0.56905 2.30524 1.58778 2.04156 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 28 3.60525 0.10432 3.64309 3.08543 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 29 0.13069 3.39147 2.98190 3.26617 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 30 0.24586 3.14239 2.12376 2.89660 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 31 1.72347 2.81909 0.37689 2.57831 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 32 3.66347 5.07975 0.04031 4.87412 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 33 2.47667 4.01547 0.13252 3.81422 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 34 1.00167 2.59703 0.70703 2.73137 34 g - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 35 0.05676 4.20180 3.48299 4.65668 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 36 4.59509 4.73119 0.02344 5.46056 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 37 2.84515 4.33720 0.09237 4.07240 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 38 4.78308 0.08208 4.63508 2.80132 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 39 3.57451 0.12965 3.61965 2.70639 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 40 0.58919 2.09357 1.59428 2.12930 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 41 1.73587 2.54347 0.43974 2.29309 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 42 2.06188 3.01483 0.26909 2.81916 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.01810 4.71400 4.71400 1.46634 0.26236 1.09861 0.40547 43 1.42036 2.54397 0.47062 2.89673 43 G - - - 1.38629 1.38629 1.38629 1.38629 0.02424 4.71400 4.20137 1.46634 0.26236 1.09861 0.40547 44 0.07990 3.45490 3.73735 3.84518 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.03169 4.70798 3.80919 1.46634 0.26236 0.78747 0.60696 45 0.02444 5.03440 4.64539 4.82492 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.04839 4.70085 3.26612 1.46634 0.26236 1.49439 0.25410 46 1.91914 1.37945 1.71219 0.86493 46 u - - > 1.38629 1.38629 1.38629 1.38629 0.01890 4.67135 4.67135 1.46634 0.26236 1.74992 0.19090 47 4.30184 2.82542 4.27927 0.09067 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.01884 4.67444 4.67444 1.46634 0.26236 1.23690 0.34289 48 4.35553 3.14040 4.34339 0.07160 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.01864 4.68489 4.68489 1.46634 0.26236 1.82431 0.17594 49 4.34208 0.91177 4.29988 0.55931 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.01864 4.68489 4.68489 1.46634 0.26236 1.82431 0.17594 50 2.35452 0.45157 2.38120 1.73731 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.01864 4.68489 4.68489 1.46634 0.26236 1.82431 0.17594 51 2.93187 1.23347 2.56882 0.54680 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.01864 4.68489 4.68489 1.46634 0.26236 1.82431 0.17594 52 2.54511 1.43211 1.87699 0.63548 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.00936 4.67562 * 1.46634 0.26236 0.00000 * //