INFERNAL1/a [1.1.5 | Sep 2023] NAME IRES_APC ACC RF00462 DESC APC internal ribosome entry site (IRES) STATES 163 NODES 44 CLEN 53 W 68 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 21:08:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00462/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 3.108398 CKSUM 3462096560 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 52.90 NC 45.80 EFP7GF -11.1364 0.71927 ECMLC 0.65329 -5.36182 3.55620 1600000 406819 0.002950 ECMGC 0.39648 -18.41219 -2.80631 1600000 194636 0.002055 ECMLI 0.63265 -4.03843 4.69583 1600000 301276 0.003983 ECMGI 0.42928 -13.89983 -0.39491 1600000 131774 0.003036 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 68 87 -7.365 -7.572 -0.040 -5.986 IL 1 1 2 1 4 1 13 72 92 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 13 68 88 -8.723 -0.014 -7.040 1.844 -3.161 -2.717 -2.784 D 4 2 3 5 3 0 7 67 86 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 11 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 53 - A - - MR 6 5 3 8 5 1 13 67 87 -7.440 -0.031 -7.255 -7.467 -8.359 1.844 -3.161 -2.717 -2.784 D 7 5 3 8 5 0 5 66 85 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 9 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 52 G C - - MP 9 8 3 13 6 2 14 66 86 -9.281 -9.220 -0.019 -7.997 -8.277 -8.672 -5.500 -3.464 -5.713 -0.330 -6.288 -4.976 -1.464 -5.979 -4.787 3.777 -5.078 -1.203 -1.833 -4.954 -3.550 -4.578 ML 10 8 3 13 6 1 7 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 6 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 2 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 8 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 9 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 51 c g - - MP 15 14 6 19 6 2 13 64 84 -9.281 -9.220 -0.019 -7.997 -8.277 -8.672 -3.588 -3.676 -3.536 -0.162 0.602 -4.144 2.446 -3.316 -3.568 -0.080 -3.989 -1.902 0.899 -3.784 2.092 -2.528 ML 16 14 6 19 6 1 6 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 6 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 2 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 8 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 8 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 50 C G - - MP 21 20 6 25 6 2 12 62 82 -9.281 -9.220 -0.019 -7.997 -8.277 -8.672 -5.419 -5.398 -4.954 -1.575 -3.509 -5.250 3.750 -4.407 -5.047 -1.430 -5.199 -3.372 -0.101 -5.427 -1.251 -3.862 ML 22 20 6 25 6 1 6 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 5 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 1 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 7 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 7 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 49 u a - - MP 27 26 6 31 6 2 10 60 80 -9.281 -9.220 -0.019 -7.997 -8.277 -8.672 -3.079 -3.112 -3.156 0.249 -2.644 -3.907 1.381 -3.179 -3.193 0.430 -3.692 -1.361 2.937 0.027 -0.499 -2.211 ML 28 26 6 31 6 1 5 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 4 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 1 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 7 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 7 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 48 u a - - MP 33 32 6 37 6 2 9 58 78 -9.281 -9.220 -0.019 -7.997 -8.277 -8.672 -2.268 -2.423 -2.417 0.702 0.682 -3.228 1.550 -2.603 -0.068 0.666 -3.010 -0.913 2.139 -2.576 -0.172 -1.590 ML 34 32 6 37 6 1 4 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 3 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 1 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 6 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 6 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 47 C G - - MP 39 38 6 43 4 2 7 56 75 -7.365 -7.572 -0.040 -5.986 -5.419 -5.398 -4.954 -1.575 -3.509 -5.250 3.750 -4.407 -5.047 -1.430 -5.199 -3.372 -0.101 -5.427 -1.251 -3.862 ML 40 38 6 43 4 1 3 57 76 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 2 56 76 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 0 55 75 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 5 58 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 5 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - C - - - ML 45 44 6 47 3 1 6 54 73 -8.355 -0.016 -7.009 -0.514 1.305 -2.024 -0.776 D 46 44 6 47 3 0 0 52 72 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 4 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - U - - - ML 48 47 3 50 3 1 5 53 72 -8.355 -0.016 -7.009 -1.108 0.099 -1.891 1.134 D 49 47 3 50 3 0 0 51 71 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 3 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - u - - - ML 51 50 3 53 3 1 4 52 71 -8.355 -0.016 -7.009 -1.048 0.622 -1.867 0.768 D 52 50 3 53 3 0 0 50 70 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 3 54 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - U - - - ML 54 53 3 56 3 1 4 51 70 -8.723 -0.014 -7.040 -2.229 -2.100 -2.992 1.777 D 55 53 3 56 3 0 0 49 68 -5.620 -0.734 -1.403 IL 56 56 3 56 3 1 2 51 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 46 - A - - MR 57 56 3 59 3 1 3 50 69 -8.723 -0.014 -7.040 1.844 -3.161 -2.717 -2.784 D 58 56 3 59 3 0 0 48 67 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 50 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 45 - C - - MR 60 59 3 62 3 1 3 49 68 -8.723 -0.014 -7.040 -0.421 1.261 -1.963 -0.737 D 61 59 3 62 3 0 0 47 66 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 49 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 44 - C - - MR 63 62 3 65 3 1 2 48 67 -8.723 -0.014 -7.040 -2.694 1.805 -3.516 -1.925 D 64 62 3 65 3 0 0 46 65 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 48 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 43 - A - - MR 66 65 3 68 3 1 2 47 66 -8.723 -0.014 -7.040 1.844 -3.161 -2.717 -2.784 D 67 65 3 68 3 0 0 45 64 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 47 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 42 - G - - MR 69 68 3 71 3 1 2 46 65 -8.723 -0.014 -7.040 -2.384 -3.711 1.854 -3.093 D 70 68 3 71 3 0 0 44 63 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 46 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 41 - U - - MR 72 71 3 74 5 1 1 45 64 -7.440 -0.031 -7.255 -7.467 -8.359 -2.229 -2.100 -2.992 1.777 D 73 71 3 74 5 0 0 43 62 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 40 u a - - MP 75 74 3 79 6 2 2 43 63 -9.281 -9.220 -0.019 -7.997 -8.277 -8.672 0.579 -2.328 -2.441 1.294 -2.259 -3.289 1.457 -2.657 -2.483 0.999 -3.035 -0.654 2.069 -2.595 -0.273 -1.591 ML 76 74 3 79 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 39 A U - - MP 81 80 6 85 4 2 2 41 61 -7.251 -8.497 -0.061 -4.950 -3.559 0.696 -3.678 3.132 -4.277 -5.014 -0.239 -3.884 -3.561 1.171 -4.127 -0.223 -0.455 -4.120 -2.038 -2.559 ML 82 80 6 85 4 1 1 41 60 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 41 60 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 39 58 -12.737 -14.007 -2.036 -0.404 IL 85 85 5 85 4 1 1 41 60 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 1 41 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 38 - A - - MR 87 86 6 89 5 1 1 39 59 -7.440 -0.031 -7.255 -7.467 -8.359 1.844 -3.161 -2.717 -2.784 D 88 86 6 89 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 89 89 3 89 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 14 37 C G - - MP 90 89 3 94 6 2 2 38 58 -9.281 -9.220 -0.019 -7.997 -8.277 -8.672 -5.419 -5.398 -4.954 -1.575 -3.509 -5.250 3.750 -4.407 -5.047 -1.430 -5.199 -3.372 -0.101 -5.427 -1.251 -3.862 ML 91 89 3 94 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 15 36 u a - - MP 96 95 6 100 6 2 2 36 56 -9.281 -9.220 -0.019 -7.997 -8.277 -8.672 -3.575 -3.307 -3.586 1.306 -2.882 -4.378 1.462 -3.417 -3.555 0.609 -4.035 -1.134 2.842 -3.839 -0.563 -2.470 ML 97 95 6 100 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 16 35 G C - - MP 102 101 6 106 4 2 2 34 54 -7.365 -7.572 -0.040 -5.986 -5.500 -3.464 -5.713 -0.330 -6.288 -4.976 -1.464 -5.979 -4.787 3.777 -5.078 -1.203 -1.833 -4.954 -3.550 -4.578 ML 103 101 6 106 4 1 1 35 55 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 4 1 1 35 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 105 101 6 106 4 0 0 34 53 -4.568 -4.250 -2.265 -0.520 IL 106 106 5 106 4 1 1 37 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 17 - A - - - ML 108 107 6 110 3 1 1 32 51 -8.355 -0.016 -7.009 1.844 -3.161 -2.717 -2.784 D 109 107 6 110 3 0 0 31 50 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 18 - A - - - ML 111 110 3 113 3 1 1 31 50 -8.355 -0.016 -7.009 1.844 -3.161 -2.717 -2.784 D 112 110 3 113 3 0 0 30 49 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 19 - A - - - ML 114 113 3 116 3 1 1 30 49 -8.355 -0.016 -7.009 1.844 -3.161 -2.717 -2.784 D 115 113 3 116 3 0 0 29 48 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 20 - A - - - ML 117 116 3 119 3 1 1 29 48 -8.355 -0.016 -7.009 1.844 -3.161 -2.717 -2.784 D 118 116 3 119 3 0 0 28 47 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 21 - U - - - ML 120 119 3 122 3 1 1 28 47 -8.355 -0.016 -7.009 -2.229 -2.100 -2.992 1.777 D 121 119 3 122 3 0 0 27 46 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 22 - U - - - ML 123 122 3 125 3 1 1 27 45 -8.355 -0.016 -7.009 -2.229 -2.100 -2.992 1.777 D 124 122 3 125 3 0 0 26 45 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 23 - U - - - ML 126 125 3 128 3 1 1 25 44 -8.355 -0.016 -7.009 -2.229 -2.100 -2.992 1.777 D 127 125 3 128 3 0 0 24 43 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 24 - U - - - ML 129 128 3 131 3 1 1 24 43 -8.355 -0.016 -7.009 -1.108 0.099 -1.891 1.134 D 130 128 3 131 3 0 0 23 42 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 25 - U - - - ML 132 131 3 134 3 1 1 23 42 -8.355 -0.016 -7.009 -2.229 -2.100 -2.992 1.777 D 133 131 3 134 3 0 0 22 41 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 26 - C - - - ML 135 134 3 137 3 1 1 22 41 -8.355 -0.016 -7.009 -2.694 1.805 -3.516 -1.925 D 136 134 3 137 3 0 0 21 40 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 27 - C - - - ML 138 137 3 140 3 1 1 21 40 -8.355 -0.016 -7.009 -2.694 1.805 -3.516 -1.925 D 139 137 3 140 3 0 0 20 39 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - U - - - ML 141 140 3 143 3 1 1 20 38 -8.355 -0.016 -7.009 -0.358 -1.223 -1.691 1.311 D 142 140 3 143 3 0 0 19 38 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - U - - - ML 144 143 3 146 3 1 1 18 37 -8.355 -0.016 -7.009 -2.229 -2.100 -2.992 1.777 D 145 143 3 146 3 0 0 18 37 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - a - - - ML 147 146 3 149 3 1 1 17 36 -8.355 -0.016 -7.009 0.772 -1.780 0.650 -1.211 D 148 146 3 149 3 0 0 17 35 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - C - - - ML 150 149 3 152 3 1 1 16 34 -8.355 -0.016 -7.009 -2.694 1.805 -3.516 -1.925 D 151 149 3 152 3 0 0 16 34 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - A - - - ML 153 152 3 155 3 1 1 14 33 -8.355 -0.016 -7.009 1.844 -3.161 -2.717 -2.784 D 154 152 3 155 3 0 0 15 33 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - A - - - ML 156 155 3 158 3 1 1 13 31 -8.355 -0.016 -7.009 1.071 -1.775 0.238 -1.225 D 157 155 3 158 3 0 0 13 32 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - A - - - ML 159 158 3 161 2 1 1 1 1 * 0.000 1.844 -3.161 -2.717 -2.784 D 160 158 3 161 2 0 0 0 0 * 0.000 IL 161 161 3 161 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 162 161 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME IRES_APC ACC RF00462 DESC APC internal ribosome entry site (IRES) LENG 53 MAXL 130 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 21:08:04 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00462/CM NSEQ 6 EFFN 3.922852 CKSUM 3462096560 STATS LOCAL MSV -7.3627 0.71927 STATS LOCAL VITERBI -8.1984 0.71927 STATS LOCAL FORWARD -3.7429 0.71927 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.18150 1.38113 1.69029 1.35704 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 0.00000 * 1 0.07917 3.87155 3.53955 3.63951 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 2 3.01124 3.86883 0.09669 3.81429 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 3 2.89041 0.76375 2.73137 0.88334 3 c - - < 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 4 3.87735 0.12238 3.72299 2.65474 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 5 2.53804 1.78118 2.33888 0.42144 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 6 2.14175 1.16963 1.64778 0.96866 6 u - - < 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 7 3.86680 0.12295 3.71714 2.65271 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 8 1.81949 0.41119 3.00091 2.07712 8 C - - - 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 9 2.31443 1.29846 2.86690 0.55975 9 U - - - 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 10 2.26385 0.90650 2.84765 0.83440 10 u - - - 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 11 3.21767 3.08307 3.75315 0.11576 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 12 1.23969 1.68209 1.79704 1.02512 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 13 0.30362 3.13387 1.80691 2.91607 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 14 3.83997 0.12442 3.70215 2.64747 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 15 1.74585 1.79093 2.17886 0.60600 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 16 2.99978 3.85202 0.09827 3.79151 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 17 0.07917 3.87155 3.53955 3.63951 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 18 0.07917 3.87155 3.53955 3.63951 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 19 0.07917 3.87155 3.53955 3.63951 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 20 0.07917 3.87155 3.53955 3.63951 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 21 3.21767 3.08307 3.75315 0.11576 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 22 3.21767 3.08307 3.75315 0.11576 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 23 3.21767 3.08307 3.75315 0.11576 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 24 2.31443 1.29846 2.86690 0.55975 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 25 3.21767 3.08307 3.75315 0.11576 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 26 3.59730 0.09706 4.14537 3.01052 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 27 3.59730 0.09706 4.14537 3.01052 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 28 1.68393 2.37133 2.71120 0.42382 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 29 3.21767 3.08307 3.75315 0.11576 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 30 0.82078 2.79627 0.89302 2.41403 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 31 3.59730 0.09706 4.14537 3.01052 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 32 0.07917 3.87155 3.53955 3.63951 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 33 0.60339 2.79693 1.19077 2.42974 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 34 0.07917 3.87155 3.53955 3.63951 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 35 3.96468 0.11789 3.71006 2.69181 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 36 0.66794 2.38987 1.62737 1.61369 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 37 2.94144 3.89372 0.10431 3.65375 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 38 0.07917 3.87155 3.53955 3.63951 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 39 3.13138 1.46125 2.92617 0.39929 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 40 0.86970 1.97784 1.49597 1.52086 40 a - - > 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 41 3.21767 3.08307 3.75315 0.11576 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 42 3.31987 4.26851 0.07462 3.82863 42 G - - - 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 43 0.07917 3.87155 3.53955 3.63951 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 44 3.59730 0.09706 4.14537 3.01052 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 45 1.74525 0.44072 2.95099 2.04377 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 46 0.07917 3.87155 3.53955 3.63951 46 A - - - 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 47 2.93378 3.88116 0.10545 3.63985 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 48 0.66190 2.22243 1.44794 1.96091 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 49 0.60721 1.84642 1.61078 2.32691 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 50 2.93946 3.89047 0.10460 3.65015 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 51 1.53023 2.89595 0.41697 2.67041 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 52 4.00535 0.11594 3.73005 2.69915 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03176 4.15861 4.15861 1.46634 0.26236 1.09861 0.40547 53 0.07917 3.87155 3.53955 3.63951 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.01600 4.14286 * 1.46634 0.26236 0.00000 * //