INFERNAL1/a [1.1.5 | Sep 2023] NAME p27_CRE ACC RF00454 DESC p27 cis-regulatory element STATES 186 NODES 51 CLEN 59 W 75 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 13:46:27 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00454/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 12 EFFN 1.954102 CKSUM 2914299683 NULL 0.000 0.000 0.000 0.000 GA 42.00 TC 42.80 NC 41.20 EFP7GF -8.7450 0.71935 ECMLC 0.66014 -6.66187 2.71883 1600000 586913 0.002045 ECMGC 0.35247 -18.61450 -3.17302 1600000 92416 0.004328 ECMLI 0.62485 -5.24226 3.94981 1600000 374635 0.003203 ECMGI 0.41883 -12.32341 -0.02406 1600000 69062 0.005792 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 75 95 -6.958 -7.165 -0.117 -3.989 IL 1 1 2 1 4 1 25 79 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 24 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 2 24 75 95 -7.916 -0.021 -6.570 -1.625 1.591 -2.445 -1.062 D 4 2 3 5 3 0 19 73 93 -6.622 -2.135 -0.392 IL 5 5 3 5 3 1 24 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 2 23 74 94 -7.916 -0.021 -6.570 -1.625 1.591 -2.445 -1.062 D 7 5 3 8 3 0 19 73 92 -6.622 -1.016 -1.013 IL 8 8 3 8 3 1 23 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 23 73 93 -7.974 -0.020 -6.628 1.723 -2.391 -2.021 -1.935 D 10 8 3 11 3 0 18 71 91 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 22 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 22 72 92 -7.974 -0.020 -6.628 -1.764 1.630 -2.589 -1.173 D 13 11 3 14 3 0 17 70 90 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 21 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 21 71 90 -7.974 -0.020 -6.628 -1.764 1.630 -2.589 -1.173 D 16 14 3 17 3 0 17 69 89 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 21 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 20 70 89 -7.974 -0.020 -6.628 -1.503 -1.496 -2.238 1.623 D 19 17 3 20 3 0 16 68 88 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 20 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 19 69 88 -7.974 -0.020 -6.628 -1.503 -1.496 -2.238 1.623 D 22 20 3 23 3 0 15 67 87 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 19 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 19 68 87 -8.363 -0.019 -6.681 1.723 -2.391 -2.021 -1.935 D 25 23 3 26 3 0 15 66 86 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 18 68 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 60 - G - - MR 27 26 3 29 3 1 18 67 86 -8.363 -0.019 -6.681 -1.601 -2.824 1.728 -2.211 D 28 26 3 29 3 0 14 65 85 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 17 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 59 - U - - MR 30 29 3 32 3 1 17 66 85 -8.363 -0.019 -6.681 -1.503 -1.496 -2.238 1.623 D 31 29 3 32 3 0 13 64 84 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 16 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 58 - A - - MR 33 32 3 35 3 1 16 65 84 -8.363 -0.019 -6.681 1.723 -2.391 -2.021 -1.935 D 34 32 3 35 3 0 12 63 83 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 16 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 57 - A - - MR 36 35 3 38 3 1 15 64 83 -8.363 -0.019 -6.681 1.723 -2.391 -2.021 -1.935 D 37 35 3 38 3 0 12 62 82 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 15 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 56 - C - - MR 39 38 3 41 3 1 14 63 82 -8.363 -0.019 -6.681 -1.764 1.630 -2.589 -1.173 D 40 38 3 41 3 0 11 61 81 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 14 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 55 - C - - MR 42 41 3 44 3 1 13 62 81 -8.363 -0.019 -6.681 -1.764 1.630 -2.589 -1.173 D 43 41 3 44 3 0 11 60 80 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 13 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 54 - A - - MR 45 44 3 47 3 1 12 61 80 -8.363 -0.019 -6.681 1.723 -2.391 -2.021 -1.935 D 46 44 3 47 3 0 10 59 79 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 12 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 53 - g - - MR 48 47 3 50 2 1 11 60 79 -8.368 -0.004 0.475 -1.467 0.768 -0.874 D 49 47 3 50 2 0 10 59 78 -4.432 -0.068 IR 50 50 3 50 2 1 11 60 80 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 17 ] - - - - - - B 51 50 3 52 111 0 10 59 78 [ BEGL 18 ] - - - - - - S 52 51 1 53 4 0 0 33 52 -0.044 -6.839 -6.246 -6.886 [ MATP 19 ] 9 28 A U - - MP 53 52 1 57 6 2 2 33 52 -9.111 -9.051 -0.021 -7.827 -8.107 -8.502 -3.812 -2.838 -3.829 3.345 -4.178 -5.242 0.123 -3.870 -3.720 1.056 -4.269 -0.311 -0.294 -4.426 -1.817 -2.662 ML 54 52 1 57 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 1 57 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 1 57 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 10 27 G C - - MP 59 58 6 63 6 2 2 31 50 -3.686 -9.051 -0.137 -7.827 -8.107 -8.502 -4.764 -3.105 -4.865 0.185 -5.264 -4.703 -0.623 -5.110 -4.342 3.644 -4.678 -0.804 -1.008 -4.482 -2.661 -3.742 ML 60 58 6 63 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 31 50 -3.384 -3.647 -0.386 -5.302 -6.078 -5.739 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 12 26 G C - - MP 65 64 6 69 6 2 2 29 48 -9.111 -9.051 -0.021 -7.827 -8.107 -8.502 -3.579 -2.588 -3.612 0.786 -3.982 -1.721 0.262 -4.053 -3.655 3.264 -4.027 0.009 -0.013 -3.463 -1.619 -2.661 ML 66 64 6 69 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 13 25 C G - - MP 71 70 6 75 4 2 2 27 46 -6.958 -7.165 -0.384 -2.192 -4.576 -4.484 -4.261 -0.714 -2.973 -4.670 3.559 -3.786 -4.311 -0.477 -4.570 -2.432 0.538 -4.643 -0.680 -3.150 ML 72 70 6 75 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 27 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 26 46 -4.568 -4.250 -2.265 -0.520 IL 75 75 5 75 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 14 - C - - - ML 77 76 6 79 3 1 1 25 43 -8.091 -0.022 -6.409 -1.083 1.385 -1.874 -0.634 D 78 76 6 79 3 0 0 23 42 -6.650 -0.313 -2.433 IL 79 79 3 79 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 24 - A - - MR 80 79 3 82 3 1 1 24 42 -8.363 -0.090 -4.126 1.723 -2.391 -2.021 -1.935 D 81 79 3 82 3 0 0 22 41 -6.390 -1.568 -0.620 IR 82 82 3 82 3 1 1 24 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 23 - C - - MR 83 82 3 85 5 1 1 23 41 -7.036 -0.041 -6.852 -7.064 -7.955 -1.582 1.578 -2.400 -1.029 D 84 82 3 85 5 0 0 21 40 -5.643 -0.549 -3.269 -4.700 -2.695 IR 85 85 3 85 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 15 22 G C - - MP 86 85 3 90 6 2 2 22 40 -9.111 -9.051 -0.021 -7.827 -8.107 -8.502 -4.001 -2.832 -4.046 0.478 -4.337 -1.554 -0.014 -4.447 -3.938 3.450 -4.283 -0.668 -0.335 -3.788 -1.936 -3.081 ML 87 85 3 90 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 3 90 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 3 90 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 16 21 C G - - MP 92 91 6 96 4 2 2 20 38 -6.958 -7.165 -0.053 -5.579 -3.899 -3.868 -1.582 -0.354 -3.143 -4.540 3.484 -3.802 -3.941 -0.107 -4.345 -1.989 0.419 -4.118 -0.970 -2.907 ML 93 91 6 96 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 95 91 6 96 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 96 96 5 96 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 97 97 6 97 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 17 - G - - - ML 98 97 6 100 3 1 1 16 35 -7.974 -0.097 -4.036 -1.601 -2.824 1.728 -2.211 D 99 97 6 100 3 0 0 16 34 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 18 - C - - - ML 101 100 3 103 3 1 1 15 33 -7.898 -0.022 -6.553 -1.582 1.578 -2.400 -1.029 D 102 100 3 103 3 0 0 14 33 -6.733 -0.911 -1.125 IL 103 103 3 103 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 19 - U - - - ML 104 103 3 106 3 1 1 13 31 -7.974 -0.020 -6.628 -1.503 -1.496 -2.238 1.623 D 105 103 3 106 3 0 0 13 32 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 20 - C - - - ML 107 106 3 109 2 1 1 1 1 * 0.000 -1.237 1.370 -2.061 -0.414 D 108 106 3 109 2 0 0 0 0 * 0.000 IL 109 109 3 109 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 110 109 3 -1 0 0 0 0 0 [ BEGR 33 ] - - - - - - S 111 51 1 112 3 0 0 38 57 -7.974 -0.097 -4.036 IL 112 112 2 112 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - C - - - ML 113 112 2 115 3 1 1 38 57 -7.898 -0.022 -6.553 -0.784 1.169 -1.156 -0.470 D 114 112 2 115 3 0 0 37 56 -6.733 -2.246 -0.359 IL 115 115 3 115 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - G - - - ML 116 115 3 118 5 1 1 37 56 -7.036 -0.041 -6.852 -7.064 -7.955 -1.440 -2.637 1.689 -2.023 D 117 115 3 118 5 0 0 36 55 -5.300 -1.144 -4.561 -1.553 -2.849 IL 118 118 3 118 5 1 1 38 57 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 31 52 G C - - MP 119 118 3 123 6 2 2 36 55 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -3.643 -2.654 -3.702 0.752 -3.955 -4.181 0.314 -4.020 -1.316 3.294 -4.054 -0.429 -0.002 -3.635 -1.601 -2.695 ML 120 118 3 123 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 3 123 6 1 1 35 54 -7.301 -6.030 -1.132 -6.009 -1.142 -4.222 0.874 -0.749 -0.480 -0.226 D 122 118 3 123 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 32 51 c g - - MP 125 124 6 129 6 2 2 34 53 -9.111 -9.051 -0.050 -5.394 -8.107 -8.502 -2.852 -2.865 -2.930 0.513 -2.362 -3.658 2.793 -2.918 -2.952 0.677 -1.125 -1.103 1.227 -3.107 0.554 -1.974 ML 126 124 6 129 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 33 50 g c - - MP 131 130 6 135 6 2 2 32 51 -9.083 -9.022 -0.021 -7.799 -8.079 -8.474 -3.104 -2.346 -3.148 1.066 -3.447 -3.777 0.659 -3.557 -3.268 2.969 -3.688 0.124 0.395 -0.796 -1.175 -2.210 ML 132 130 6 135 6 1 1 31 50 -6.582 -6.928 -0.928 -1.336 -6.778 -4.307 0.009 -0.405 -0.591 0.655 MR 133 130 6 135 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 34 49 G C - - MP 137 136 6 141 4 2 2 30 49 -6.874 -8.119 -0.080 -4.573 -4.764 -3.105 -4.865 0.185 -5.264 -4.703 -0.623 -5.110 -4.342 3.644 -4.678 -0.804 -1.008 -4.482 -2.661 -3.742 ML 138 136 6 141 4 1 1 30 49 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 4 1 1 29 48 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 140 136 6 141 4 0 0 28 47 -12.737 -14.007 -2.036 -0.404 IL 141 141 5 141 4 1 1 30 49 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 142 142 6 142 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 48 - G - - MR 143 142 6 145 5 1 1 28 47 -7.102 -0.039 -6.917 -7.129 -8.021 -0.622 -2.108 1.469 -1.515 D 144 142 6 145 5 0 0 27 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 145 145 3 145 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 35 47 G C - - MP 146 145 3 150 4 2 2 27 46 -6.958 -7.165 -0.053 -5.579 -4.119 -1.123 -4.150 0.616 -4.732 -4.420 -0.216 -4.560 -4.013 3.457 -4.370 -0.497 -0.503 -3.950 -2.182 -3.103 ML 147 145 3 150 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 148 145 3 150 4 1 1 27 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 149 145 3 150 4 0 0 26 46 -4.568 -4.250 -2.265 -0.520 IL 150 150 5 150 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 151 151 6 151 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 36 - G - - - ML 152 151 6 154 3 1 1 24 43 -8.363 -0.019 -6.681 -0.622 -2.108 1.469 -1.515 D 153 151 6 154 3 0 0 23 42 -5.620 -0.734 -1.403 IL 154 154 3 154 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 46 - g - - MR 155 154 3 157 5 1 1 23 42 -7.102 -0.106 -6.917 -4.278 -8.021 -0.478 -0.616 0.998 -0.663 D 156 154 3 157 5 0 0 22 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 157 157 3 157 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 37 45 C G - - MP 158 157 3 162 6 2 2 22 41 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.419 -4.313 -4.131 -0.557 -2.878 -4.559 3.509 -3.675 -4.176 -0.298 -4.451 -2.259 0.649 -4.497 -0.581 -3.020 ML 159 157 3 162 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 3 162 6 1 1 21 40 -7.301 -6.030 -1.132 -6.009 -1.142 -4.222 0.119 -0.758 0.555 -0.228 D 161 157 3 162 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 38 44 G C - - MP 164 163 6 168 6 2 2 20 39 -9.111 -9.051 -0.021 -7.827 -8.107 -8.502 -4.764 -3.105 -4.865 0.185 -5.264 -4.703 -0.623 -5.110 -4.342 3.644 -4.678 -0.804 -1.008 -4.482 -2.661 -3.742 ML 165 163 6 168 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 39 43 G C - - MP 170 169 6 174 4 2 2 18 37 -6.958 -7.165 -0.053 -5.579 -4.764 -3.105 -4.865 0.185 -5.264 -4.703 -0.623 -5.110 -4.342 3.644 -4.678 -0.804 -1.008 -4.482 -2.661 -3.742 ML 171 169 6 174 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 173 169 6 174 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 174 174 5 174 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 175 175 6 175 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 40 - C - - - ML 176 175 6 178 3 1 1 15 33 -7.974 -0.020 -6.628 -1.764 1.630 -2.589 -1.173 D 177 175 6 178 3 0 0 15 33 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 41 - U - - - ML 179 178 3 181 3 1 1 13 31 -7.974 -0.020 -6.628 -1.503 -1.496 -2.238 1.623 D 180 178 3 181 3 0 0 13 32 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 42 - C - - - ML 182 181 3 184 2 1 1 1 1 * 0.000 -1.764 1.630 -2.589 -1.173 D 183 181 3 184 2 0 0 0 0 * 0.000 IL 184 184 3 184 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 185 184 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME p27_CRE ACC RF00454 DESC p27 cis-regulatory element LENG 59 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 13:46:27 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00454/CM NSEQ 12 EFFN 2.510742 CKSUM 2914299683 STATS LOCAL MSV -7.9303 0.71935 STATS LOCAL VITERBI -8.7039 0.71935 STATS LOCAL FORWARD -3.3301 0.71935 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.71069 1.02874 1.24093 1.75628 1.38629 1.38629 1.38629 1.38629 0.08594 3.97738 2.75487 1.46634 0.26236 0.00000 * 1 2.83340 0.20401 3.40933 2.37873 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93146 3.93146 1.46634 0.26236 1.68560 0.20498 2 2.83340 0.20401 3.40933 2.37873 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04002 3.93146 3.93146 1.46634 0.26236 0.46309 0.99246 3 0.14205 3.31964 3.03590 3.03183 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 4 2.94380 0.18278 3.52009 2.46762 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 5 2.94380 0.18278 3.52009 2.46762 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 6 2.68555 2.63671 3.20591 0.19882 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 7 2.68555 2.63671 3.20591 0.19882 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 8 0.14205 3.31964 3.03590 3.03183 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 9 0.30920 2.87538 1.90342 2.80486 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 10 2.64071 3.32600 0.15711 3.26634 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.28586 1.47013 3.97738 0.15570 1.93666 1.09861 0.40547 11 2.12904 2.39223 0.34735 2.48809 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 12 3.26977 0.22205 3.05867 2.17015 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.28586 3.97738 1.47013 1.46634 0.26236 1.09861 0.40547 13 2.38206 0.32536 2.94468 2.01923 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.04866 3.74019 3.74019 1.46634 0.26236 0.15099 1.96509 14 2.38818 2.54439 0.26513 2.77136 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 15 2.67572 0.26893 2.78255 2.25318 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 16 2.78253 3.67143 0.13493 3.24665 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.10075 3.97738 2.56261 1.46634 0.26236 1.09861 0.40547 17 2.79921 0.21113 3.37477 2.35129 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04061 3.91724 3.91724 1.46634 0.26236 0.39606 1.11768 18 2.68555 2.63671 3.20591 0.19882 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 19 2.46092 0.35783 3.04676 1.78415 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 20 2.49962 2.95688 0.21668 2.80161 21 G - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 21 3.01738 0.26656 2.71278 2.13109 22 C - - > 1.38629 1.38629 1.38629 1.38629 0.10075 3.97738 2.56261 1.46634 0.26236 1.09861 0.40547 22 2.79921 0.21113 3.37477 2.35129 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.04061 3.91724 3.91724 1.46634 0.26236 0.39606 1.11768 23 0.14205 3.31964 3.03590 3.03183 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 24 2.44544 3.22395 0.19211 3.03040 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 25 2.72008 0.39788 2.43575 1.74379 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 26 3.44748 0.18832 3.15249 2.33219 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 27 3.01000 2.20411 2.67625 0.25937 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.10075 3.97738 2.56261 1.46634 0.26236 1.09861 0.40547 28 2.10862 0.47570 2.29797 1.85353 29 C - - - 1.38629 1.38629 1.38629 1.38629 0.04061 3.91724 3.91724 1.46634 0.26236 1.81083 0.17855 29 2.66023 3.53253 0.15531 3.10805 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.04061 3.91724 3.91724 1.46634 0.26236 1.81083 0.17855 30 2.18964 2.63896 0.30479 2.53418 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.04061 3.91724 3.91724 1.46634 0.26236 0.39606 1.11768 31 2.24356 0.74051 1.84872 1.34857 32 c - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 32 1.89037 2.28903 0.52835 1.84490 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 33 2.60894 3.28713 0.16395 3.21290 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 34 2.08618 2.97033 0.26637 2.84053 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 35 1.93140 3.05601 0.30412 2.65626 36 G - - - 1.38629 1.38629 1.38629 1.38629 0.10075 3.97738 2.56261 1.46634 0.26236 1.09861 0.40547 36 3.15366 0.25049 2.92503 2.07769 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.04061 3.91724 3.91724 1.46634 0.26236 0.39606 1.11768 37 2.63426 3.31809 0.15848 3.25540 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 38 2.63417 3.31798 0.15850 3.25525 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 39 2.94380 0.18278 3.52009 2.46762 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 40 2.68555 2.63671 3.20591 0.19882 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 41 2.94380 0.18278 3.52009 2.46762 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 42 3.36093 0.19596 3.11250 2.31505 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 43 3.29256 0.20252 3.07958 2.30064 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 44 2.28070 3.00700 0.23898 2.79818 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 45 1.83865 1.83947 0.60742 1.98549 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 46 3.08550 0.27284 2.80561 2.02034 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 47 1.93140 3.05601 0.30412 2.65626 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 48 3.43025 0.18979 3.14468 2.32888 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.09587 3.97738 2.62164 1.46634 0.26236 1.09861 0.40547 49 2.39695 0.54890 2.11547 1.55664 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04041 3.92192 3.92192 1.46634 0.26236 0.41575 1.07835 50 1.78497 2.21786 0.52452 2.02864 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 51 2.33168 0.40306 2.44452 1.91170 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 52 1.04581 2.53471 0.79735 2.13040 53 g - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 53 0.14205 3.31964 3.03590 3.03183 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 54 2.94380 0.18278 3.52009 2.46762 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 55 2.94380 0.18278 3.52009 2.46762 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 56 0.14205 3.31964 3.03590 3.03183 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 57 0.14205 3.31964 3.03590 3.03183 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 58 2.68555 2.63671 3.20591 0.19882 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 59 2.78253 3.67143 0.13493 3.24665 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.01928 3.95847 * 1.46634 0.26236 0.00000 * //