INFERNAL1/a [1.1.5 | Sep 2023] NAME UnaL2 ACC RF00436 DESC UnaL2 LINE 3' element STATES 166 NODES 46 CLEN 54 W 69 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 11 00:09:17 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00436/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 30 EFFN 5.123291 CKSUM 3902131467 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 55.00 NC 54.90 EFP7GF -12.9348 0.71929 ECMLC 0.59151 -5.52278 4.24589 1600000 387837 0.003094 ECMGC 0.45394 -13.68736 -0.95132 1600000 129690 0.003084 ECMLI 0.59836 -3.39740 5.04772 1600000 187826 0.006389 ECMGI 0.47491 -10.96677 0.76489 1600000 105132 0.003805 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 69 88 -7.879 -8.086 -0.028 -6.500 IL 1 1 2 1 4 1 16 73 93 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 16 69 88 -8.846 -0.011 -7.500 0.406 -1.170 -0.658 0.675 D 4 2 3 5 3 0 10 68 87 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 15 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - g - - - ML 6 5 3 8 3 1 15 68 87 -8.846 -0.011 -7.500 0.254 -1.108 0.576 -0.230 D 7 5 3 8 3 0 9 67 86 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 14 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 14 67 86 -8.846 -0.011 -7.500 -0.701 0.782 -0.795 0.122 D 10 8 3 11 3 0 8 66 85 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 13 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 1 14 66 85 -8.846 -0.011 -7.500 0.789 -1.240 -0.637 0.270 D 13 11 3 14 3 0 7 65 84 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 12 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - c - - - ML 15 14 3 17 3 1 13 65 84 -8.846 -0.011 -7.500 0.004 0.573 -1.622 0.244 D 16 14 3 17 3 0 6 64 83 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 12 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 1 12 64 83 -8.846 -0.011 -7.500 0.817 -1.066 -0.282 -0.093 D 19 17 3 20 3 0 5 63 82 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 11 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 11 63 82 -8.846 -0.011 -7.500 -0.121 1.137 -2.088 -0.631 D 22 20 3 23 3 0 4 62 81 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 10 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 10 62 81 -8.846 -0.011 -7.500 1.290 -0.458 -1.802 -0.887 D 25 23 3 26 3 0 3 60 80 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 9 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 27 26 3 29 3 1 9 61 80 -8.846 -0.011 -7.500 0.084 -0.561 -0.262 0.514 D 28 26 3 29 3 0 3 59 79 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 8 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - g - - - ML 30 29 3 32 3 1 8 60 79 -8.846 -0.011 -7.500 0.136 -1.351 0.547 0.068 D 31 29 3 32 3 0 2 58 78 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 7 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - u - - - ML 33 32 3 35 3 1 8 59 78 -8.846 -0.011 -7.500 0.633 -1.041 -1.460 0.678 D 34 32 3 35 3 0 1 57 77 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 6 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - c - - - ML 36 35 3 38 3 1 7 58 76 -9.192 -0.010 -7.510 -0.252 0.278 -0.408 0.256 D 37 35 3 38 3 0 1 56 75 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 5 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 57 - a - - MR 39 38 3 41 3 1 6 57 75 -9.192 -0.010 -7.510 0.921 -1.298 -0.952 0.242 D 40 38 3 41 3 0 0 55 74 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 4 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 56 - a - - MR 42 41 3 44 3 1 5 56 74 -9.192 -0.010 -7.510 0.651 -1.228 -1.085 0.615 D 43 41 3 44 3 0 0 54 73 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 3 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 55 - A - - MR 45 44 3 47 3 1 5 55 73 -9.192 -0.010 -7.510 1.092 -1.506 -1.649 0.260 D 46 44 3 47 3 0 0 53 72 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 3 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 54 - U - - MR 48 47 3 50 3 1 4 54 72 -9.192 -0.010 -7.510 -1.105 -1.529 -0.146 1.192 D 49 47 3 50 3 0 0 52 71 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 2 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 53 - u - - MR 51 50 3 53 3 1 4 53 71 -9.192 -0.010 -7.510 0.555 -1.228 -1.141 0.723 D 52 50 3 53 3 0 0 51 70 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 2 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 52 - C - - MR 54 53 3 56 3 1 3 52 70 -9.192 -0.010 -7.510 -1.938 1.760 -3.441 -1.940 D 55 53 3 56 3 0 0 50 69 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 51 - g - - MR 57 56 3 59 3 1 3 51 69 -9.192 -0.010 -7.510 0.187 -0.527 0.703 -0.891 D 58 56 3 59 3 0 0 49 68 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 50 - G - - MR 60 59 3 62 3 1 2 49 68 -9.192 -0.010 -7.510 -1.364 -2.880 1.686 -1.951 D 61 59 3 62 3 0 0 48 67 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 49 - U - - MR 63 62 3 65 3 1 2 48 67 -9.192 -0.010 -7.510 -3.127 -2.864 -3.909 1.880 D 64 62 3 65 3 0 0 47 66 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 48 - A - - MR 66 65 3 68 3 1 2 47 66 -9.192 -0.010 -7.510 1.920 -4.081 -3.569 -3.784 D 67 65 3 68 3 0 0 46 65 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 47 - A - - MR 69 68 3 71 5 1 1 46 65 -7.888 -0.022 -7.704 -7.916 -8.808 1.920 -4.081 -3.569 -3.784 D 70 68 3 71 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 13 46 U A - - MP 72 71 3 76 4 2 2 45 64 -7.739 -8.984 -0.044 -5.438 -6.601 -6.455 -6.159 -2.680 -4.727 -6.504 -0.414 -5.545 -6.147 -2.655 -6.418 -4.326 3.858 -6.603 -2.338 -4.502 ML 73 71 3 76 4 1 1 45 64 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 4 1 1 45 63 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 75 71 3 76 4 0 0 43 62 -12.737 -14.007 -2.036 -0.404 IL 76 76 5 76 4 1 1 45 64 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 45 - U - - MR 78 77 6 80 5 1 1 43 62 -7.888 -0.022 -7.704 -7.916 -8.808 -1.602 -1.462 -1.504 1.563 D 79 77 6 80 5 0 0 42 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 14 44 G C - - MP 81 80 3 85 6 2 2 42 61 -5.968 -9.476 -0.037 -8.252 -8.532 -8.927 -6.386 -3.913 -6.874 -0.990 -7.469 -5.301 -2.431 -7.074 -5.263 3.869 -5.518 -1.714 -2.791 -5.498 -4.597 -5.730 ML 82 80 3 85 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 43 61 -1.943 -3.314 -0.823 -4.969 -5.745 -5.406 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 43 U G - - MP 87 86 6 91 6 2 2 40 59 -9.536 -9.476 -0.016 -8.252 -8.532 -8.927 -5.601 -5.581 -5.018 -1.831 -3.473 -5.259 0.821 -4.335 -5.078 -1.859 -5.249 -3.577 -0.174 -5.557 3.623 -3.899 ML 88 86 6 91 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 18 42 A U - - MP 93 92 6 97 4 2 2 38 57 -5.073 -8.086 -0.066 -6.500 -5.467 -4.212 -5.173 3.843 -6.573 -7.872 -2.182 -5.110 -5.233 -0.758 -5.849 -1.512 -2.557 -6.673 -4.101 -4.068 ML 94 92 6 97 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 39 59 -1.964 -2.647 -0.848 -5.133 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 20 - A - - - ML 99 98 6 101 3 1 1 35 54 -8.846 -0.011 -7.500 1.649 -1.654 -2.269 -1.565 D 100 98 6 101 3 0 0 34 53 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 21 - G - - - ML 102 101 3 104 3 1 1 34 53 -8.846 -0.011 -7.500 -2.174 -4.000 1.857 -3.423 D 103 101 3 104 3 0 0 33 52 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 22 - U - - - ML 105 104 3 107 3 1 1 33 52 -9.192 -0.010 -7.510 -1.802 -2.135 -2.932 1.746 D 106 104 3 107 3 0 0 32 51 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 41 - C - - MR 108 107 3 110 3 1 1 32 51 -9.192 -0.010 -7.510 -3.732 1.902 -4.460 -2.827 D 109 107 3 110 3 0 0 31 49 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 40 - U - - MR 111 110 3 113 5 1 1 31 50 -7.888 -0.022 -7.704 -7.916 -8.808 -3.127 -2.864 -3.909 1.880 D 112 110 3 113 5 0 0 30 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 23 39 C G - - MP 114 113 3 118 6 2 2 30 49 -9.536 -9.476 -0.016 -8.252 -8.532 -8.927 -5.467 -5.561 -5.020 -1.741 0.607 -5.315 3.604 -4.439 -5.097 -1.629 -5.290 -3.654 -0.130 -5.454 -1.272 -3.916 ML 115 113 3 118 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 24 38 G C - - MP 120 119 6 124 6 2 2 28 47 -9.536 -9.476 -0.016 -8.252 -8.532 -8.927 -4.499 -2.484 -4.400 0.462 -5.372 -3.403 -0.526 -5.039 -4.511 3.523 -4.765 -0.040 -0.798 -3.154 -2.535 -3.378 ML 121 119 6 124 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 25 37 C G - - MP 126 125 6 130 6 2 2 26 45 -9.536 -9.476 -0.016 -8.252 -8.532 -8.927 -7.169 -7.249 -6.687 -3.857 -5.546 -4.839 3.951 -7.069 -7.229 -3.768 -3.892 -5.540 -2.919 -7.406 -4.240 -6.224 ML 127 125 6 130 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 26 36 U A - - MP 132 131 6 136 6 2 2 24 43 -9.536 -9.476 -0.016 -8.252 -8.532 -8.927 -6.601 -6.455 -6.159 -2.680 -4.727 -6.504 -0.414 -5.545 -6.147 -2.655 -6.418 -4.326 3.858 -6.603 -2.338 -4.502 ML 133 131 6 136 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 27 35 u a - - MP 138 137 6 142 6 2 2 22 41 -9.536 -9.476 -0.016 -8.252 -8.532 -8.927 -4.836 -4.801 -4.564 -0.891 -3.237 -5.017 2.711 -4.027 -4.568 -0.725 -4.889 -2.708 2.826 -4.901 -0.879 -3.377 ML 139 137 6 142 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 28 34 U A - - MP 144 143 6 148 4 2 2 20 39 -7.879 -8.086 -0.028 -6.500 -6.601 -6.455 -6.159 -2.680 -4.727 -6.504 -0.414 -5.545 -6.147 -2.655 -6.418 -4.326 3.858 -6.603 -2.338 -4.502 ML 145 143 6 148 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 29 - G - - - ML 150 149 6 152 3 1 1 17 35 -8.846 -0.011 -7.500 -3.242 -4.653 1.923 -3.984 D 151 149 6 152 3 0 0 17 35 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 30 - G - - - ML 153 152 3 155 3 1 1 16 34 -8.846 -0.011 -7.500 -3.242 -4.653 1.923 -3.984 D 154 152 3 155 3 0 0 16 34 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 31 - A - - - ML 156 155 3 158 3 1 1 14 33 -8.846 -0.011 -7.500 1.822 -3.254 -2.101 -2.970 D 157 155 3 158 3 0 0 15 33 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - U - - - ML 159 158 3 161 3 1 1 12 31 -8.846 -0.011 -7.500 -3.127 -2.864 -3.909 1.880 D 160 158 3 161 3 0 0 13 32 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - A - - - ML 162 161 3 164 2 1 1 1 1 * 0.000 1.920 -4.081 -3.569 -3.784 D 163 161 3 164 2 0 0 0 0 * 0.000 IL 164 164 3 164 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 165 164 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME UnaL2 ACC RF00436 DESC UnaL2 LINE 3' element LENG 54 MAXL 125 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 11 00:09:17 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00436/CM NSEQ 30 EFFN 6.383057 CKSUM 3902131467 STATS LOCAL MSV -7.4714 0.71929 STATS LOCAL VITERBI -7.9173 0.71929 STATS LOCAL FORWARD -4.2952 0.71929 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23112 1.67846 1.46815 1.23436 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 0.00000 * 1 1.09346 2.28505 1.85922 0.89801 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 2 1.21371 2.21287 0.95001 1.57607 2 g - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 3 1.96150 0.79674 1.95197 1.32215 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 4 0.81457 2.33720 1.84711 1.19442 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 5 1.39678 0.94742 2.62954 1.22842 5 c - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 6 0.79635 2.18230 1.58046 1.46808 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 7 1.48897 0.54802 3.01056 1.91706 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 8 0.45228 1.70124 2.79808 2.11659 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 9 1.33793 1.79606 1.55797 1.01861 9 u - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 10 1.30344 2.42265 0.96893 1.34619 10 g - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 11 0.92337 2.18325 2.49787 0.89677 11 u - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 12 1.60015 1.16306 1.66343 1.21700 12 c - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 13 4.66079 3.32472 4.56888 0.05743 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 14 3.43090 4.41412 0.05875 4.37449 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04907 3.27779 4.58784 0.88518 0.53212 1.09861 0.40547 15 3.88339 2.27961 3.78415 0.15739 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 16 0.07854 4.35163 3.04769 4.18782 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04736 3.32205 4.58784 0.49210 0.94505 1.09861 0.40547 17 0.21420 2.59279 3.14078 2.59354 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 18 3.01628 4.38982 0.08341 3.98244 21 G - - - 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 19 2.75729 3.04095 3.61601 0.14867 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 20 3.91190 0.12905 3.76356 2.55276 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 21 2.37249 3.05183 0.21598 2.92390 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 22 5.17216 0.02660 4.62822 4.52745 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 23 4.62761 3.32033 4.54858 0.05816 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 24 3.39291 0.85679 3.18507 0.69216 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 25 4.61548 3.31869 4.54109 0.05843 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 26 3.88003 4.88371 0.04143 4.39270 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 27 3.88003 4.88371 0.04143 4.39270 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 28 0.10439 3.85901 2.93490 3.69277 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 29 3.82845 3.61324 4.37480 0.06326 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 30 0.04170 4.49595 4.12732 4.30015 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 31 0.06714 4.73939 3.14286 4.34013 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 32 0.74361 3.35075 0.80585 3.15029 35 a - - > 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 33 0.06677 4.75135 3.14518 4.35127 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 34 4.66320 5.00946 0.02220 5.14140 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 35 3.25798 0.26680 2.95664 1.93994 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 36 1.81556 3.92171 0.23298 3.67795 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 37 3.82844 3.61324 4.37480 0.06326 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 38 4.25530 0.05140 4.71600 3.61324 41 C - - - 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 39 4.40314 3.46063 4.16674 0.06097 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 40 2.89313 3.98353 0.10575 3.63724 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 41 4.54438 0.07035 4.32553 3.12167 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 42 2.69268 2.51891 2.48092 0.26385 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 43 0.06543 4.79579 3.15361 4.39257 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 44 0.04170 4.49595 4.12732 4.30015 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 45 0.04170 4.49595 4.12732 4.30015 48 A - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 46 3.82844 3.61324 4.37480 0.06326 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 47 2.41421 3.53084 0.19626 2.82211 50 G - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 48 1.26874 1.74994 0.85118 2.13606 51 g - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 49 2.84762 0.13617 4.01039 2.97199 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 50 0.98133 2.33756 2.23693 0.86313 53 u - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 51 2.33150 2.60873 1.46994 0.51202 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 52 0.59060 2.57246 2.67342 1.20183 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 53 0.91206 2.33524 2.19337 0.94167 56 a - - : 1.38629 1.38629 1.38629 1.38629 0.02056 4.58784 4.58784 1.46634 0.26236 1.09861 0.40547 54 0.71770 2.38614 2.09171 1.21515 57 a - - : 1.38629 1.38629 1.38629 1.38629 0.01033 4.57761 * 1.46634 0.26236 0.00000 * //