# STOCKHOLM 1.0
#=GF ID SNORA22
#=GF AC RF00414
#=GF DE Small nucleolar RNA SNORA22
#=GF AU Moxon SJ; 0000-0003-4644-1816
#=GF GA 80.0
#=GF NC 79.8
#=GF TC 80.2
#=GF PI snoACA22
#=GF SE Moxon SJ, INFERNAL
#=GF SS Predicted; RNAFOLD; Moxon SJ
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 31.36 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Mus_musculus300777;
#=GF DR snoopy; Loxodonta_africana300466;
#=GF RN [1]
#=GF RM 15199136
#=GF RT Human box H/ACA pseudouridylation guide RNA machinery.
#=GF RA Kiss AM, Jady BE, Bertrand E, Kiss T
#=GF RL Mol Cell Biol 2004;24:5797-5807.
#=GF CC ACA22 is a member of the H/ACA class of snoRNA that guide the sites of
#=GF CC modification of uridines to pseudouridines [1].
#=GF WK Small_nucleolar_RNA_SNORA22
#=GF SQ 31

AJ609437.1/1-134             UUGCACAGUGAACACCCAAGUGUGCU-UUAUAGUU-C-C----CUUGGCUU--UGACCCUGUGCUAGAGCAUUG----CCUGCUCUUCUCCUCUG-CAUUAAAAGGAAUAUU--UAUCCUUUUAAAUGUAUUCAGAAAGCCAGCACAUUA
AC073210.8/129951-130084     UUGCACAGUGAACACCCAAGUGUGCU-UUAUAGUU-C-C----CUUGGCUU--UGACCCUGUGCUAGAGCAUUG----CCUGCUCUUCUCCUCUG-CAUUGAAAGGAAUAUU--UAUCCCUUUAAAUGUAUUCAGAAAGCCAGCACAUUA
AC092579.3/114744-114881     UUGCACAGUGAACACCCAAGUGUGCU-UUAUAGUU-C-C----CUUGGCUU--UGACCCUGUGCUAGAGCAUUCAUUACCUGUUCAUCUGCUCUG-CAUUGAAAGGAAUAUU--UGUCCUUUUAAAUGUAUUCAGAAAGCCAGCACAUUA
AC121336.3/155535-155667     UUGGGCAGUGAACACCCAAGUGUGCU-UUAUAGUU-C-C----UUUGGCUU--UGACUUUGUGCUAGAGCAAUG----UCUGUUAUUUUUCUCUG-CAUUGAAAGGAGCAUU--UAUCCUUUUAAAUGUAUUCAGAAAGCCAGUACAUU-
AB022159.1/10119-10254       UUGCACAGUGAACACCCAAGUGUGCU-CUGUAGUU-C-C----CUUGGCCU--UGACUCUGUGCUAGAGUAAAG----UCUGUUCUUUUCCUCUGACAUUAAAAGGAAUACU-GUGUCCUUUUCAAUGUAUUCAGAAAGUCAGCACACCA
AAFC03070778.1/3796-3663     UUGCACAGUGAACACCCAAGUGUGCU-UUGUAGUU-C-C----CUUGGCUU--UGACUCUGUGCUAGAGUAAUG----UCUGUUCUUUUCCUCUG-CAUUGAAAGGACUAUU--UAUCCUUUUAAAUGUAUUCAGAAAGUCAGCACAUUA
AANN01150672.1/731-865       UUGCACAGUGAACACCCAAGUGUGCU-UUAUAGUU-C-C----CUUGGCUU--UGACCCUGUGCUAGAGCAAUG----UCUGUUCUUUUCCUCUG-CGUUGAAAGGGCUACU-UUAUCCCUUUAAAUGUAUUCAGAAAAGCAGCACAUUA
AAPY01320644.1/537-670       UUGCACAGUGAACACCCAAGUGUGCU-UGAUAGUU-C-C----CUUGGCUU--CGACUCUGUGCUAGAGCAAUG----UCUGGUCUUUUCCUCUG-CGUUGGAAGGACUAUU--UAUCCUUUUAAAUGUAUUCAGAAAACCAGCACAUAA
AALT01504546.1/1608-1479     UUGCACAGUGAACACCCAAGUGUUCU-UUAUAGUU-C-C----CUUGGUUU--UAACUCUGUGCUAGAGCAAUG----UCUGUUCUUUUCCUCUG-CACUGAAAGGACUA------UCCUUUUAAGUGUAUUCAGAAAGUCAGCACAUUA
AAIY01105610.1/1801-1934     UCGCACAGUGAACACCCGAGUGUGCU-UCGUAGUU-C-C----CUUGGCCU--UGACACUGUGCUAGAGCAAUG----UCUGGUCUUUUCCUUUG-CAUUGAGAGGCACAUU--CAUCCUUUCAAAUGUAUUCAAAAGGCCAGCACAUCU
ABDC01507313.1/680-547       UUGUACAAUGAACACCCAAGAGAGCU-UUAUAGUU-C-C----CUGGACUU--UGACACUGUGCUGGAGCAAUG----ACUGUUCUUUUCCUCUG-CAUUGAAAGGAGUAUU--UAUCCUUUUAGAUGUAUUCAGAAAGCCAGCAAGCAC
AAFR03053799.1/48700-48567   CUGCACAGAGAACACCCAAGCUUACU-UUGUAGUU-C-C----CUUGGCUC--AUAGUCUGUGCUAGAGUAAUA----GCUGCUCUUUUCCUCUG-CAUUGGAAGGAAUAUC--UAUCCUUUUAUAUGUAUUCAGAAGGGCUGCACAUUU
AAHX01095956.1/6269-6143     CUGCACAGUGAACACCCAAGUGUGCU-CUGUAGUU-C-C----CUUGGCCU--UGACUUUGUGCU-----AAAG----UCUUUUCUUUUCCUCUG-CAUUGAAAGUA--CUG--UGUCCUUUUAAAUGUAUUCAGAAAAUCAGCACACCA
AAPN01399938.1/10516-10383   UCGCACAGCGAACACCCAAGUGUGCU-CUCUAGUU-C-U----CUUGGUCU--AAAUUCUGUGCUAAAGCAAAC----GUUGUUCUUUUCCUCUG-CAAUGAAAGGAGUCCU--UUUCCUUUUAUAUGUAUUCAGAAGGACAGCACACGG
AC188585.3/120174-120042     UUCCACAGUGAAUA-CCAAGUUUGCU-UUAUAGUU-C-C----CAUGGCUU--UGACUGUAUGCUAGAGCAAUG----UCUGUGGUUUCCCUCUG-CAUUGAAAGGAGCAUU--UAUCCUUUUAAAUGUAUUCAGAAAGCCAGCACAUUU
AAYZ01395334.1/11-145        UUGCACAGUGAACACCCA--AGUGUGCUUGCCACU-U-GGGGGGGUGGCUU--UGAUUCUGUGCUACAGCAACG----UCUGUCCUUUUCCUCUA-CAUUGAAAGGCGCUUU----GUCCUUUGAAUGUAUUCAGAAAGUCAGCACAUGA
CAAE01015001.1/644943-644807 GUGCACAGCGAACACCCAAGGAUGCUAACAUGGCU-CCC----CCUGGUCUCCUGAAUCUGUGCUAAAGUA-AA----UCUGAUUUGUACCUCUG-CAUUUGGAGAGCUGCU--UUCUCUUUUAAAUGUAUUCAGCAGAUCAGAAUAAAU
AANH01000630.1/47101-47237   AAGCACAGAGAACACCCAAGGGUGCUAACGUAGCU-CCC----CCUGGUCUCUUGUAUCUGUGCUACAGUA-AA----UCUGAUCUGUACCUCUG-CAUUUGGGGAGUCCCU--UUCUCUCCUACAUGUAUUCAGCGGAUCAGAAUAAAC
BAAE01260308.1/33-169        GUGCACAGUGAACACCCAAGGAUGCUGCUGUGGCUCU-C----CCUGGUCUCCUCUAUCUGUGCUACAGUA-AC----UCUGAUCUGUACCUCUG-CAUUGGGACAGUCUCC--UCCUCUCCUACAUGUAUUCAACAGAUCAGAAUAAUC
AAKN02045360.1/34070-34205   UUGCACAGUGAACACCCAAGUGUGCU-UUGUAGUU-C------CUUGGCUU--UGACUCUGUGCUAGAGUAAUG---UCCUGUUCUUUCCCUCUG-CAUUGAAAGGACUAUUUUUUUCCUUUUAAAUGUAUUCAGAAAGGCAGCACAUAC
AAWR02041249.1/41666-41533   UUGCACAGUGAACACCCAAGUGUGCU-UUAUAGUU-C-C----CUUGGUUU--UGAAUCUGUGCUAGAGCAAUG----UCUGUUCUUUUCCUCUG-CGUUGAAAGGACUAUU--UAUCCUUUUAAAUGUAUUCAGAAAGUCAGCACAUAU
AAGV020756141.1/682-811      UUGCACGGUGAACACCCAAGUGUACU-UUAUAGUU-C-C----CUUGGCUU--UGACUCUGUGCGAGAGCAAUA----UCUGUUCUUCUCCUCUG-CAUUGAAAGGAAUA------UCCUUUUAAAUGUAUUCAGAAGUUCAGCACAUUU
EU240266.1/1-132             UUGCACAGUGAACACCCAAGUGUGCU-UCAUAGUU-C-C----CUUGGUUU--UAAUUCUGUGCUAGAAUA--A----CCUGUGCUUUUCCUCUG-CAUUGGAAGGAUUGGC--AUUCCUUUUAUAUGUAUUCAGAAGGACAGUACAUUU
AC210185.5/49852-49719       UUGCACAGGGAAUACCCAAGUGUGCU-UUAUAGUU-U-C----CUUGGCUU--UGACCCUGUGCUAGAGCAUUA----CCUGUUCUUCUCCUCUG-CAUUGAAAGGAAUAUU--UAUCCUUUUAAAUGUAUUCUGAAAGCCAGCACAUUA
AC183835.2/139954-139821     UUGCACAGUGAACACCCAAGUGUGCU-UUAUAGUU-C-C----CUUGGCUU--UGACCCUGUGCUAGAGCAUUG----CCUGCUCUUCUCCUCUG-CAUUGAAAGGAAUAUU--UAUCCUUUUAAAUGUAUUCAGAAAGCCAGCACAUUA
AAPE02029714.1/60660-60793   UUGCACAGUGAACACCCAAGUGUUCU-UUAUAGUU-C-C----CUUGGCUU--UGACUCUGUGCUAGAGCAAUG----UCUGUUCUUUUCCUCUG-CAUUGAAAGGACUGUU--UAACCUUUUAAAUGUAUUCAUAAAGUUAGCACAUUA
CAAB02004364.1/67803-67667   GUGCACGGUGAACACCCAAGGGUGCUAACAUGGCU-CCC----CCUGGUCUCUUCUACCUGUGCUAUAGUA-AA----CCUGAUUUGUACCUCUG-CAUUUGGGGAGCUGUC--UCCUCUCUUAAAUGUAUUCAGCAGAUCAGAAUAACU
AAGW02070483.1/11846-11713   UUGCACAGUGAACACCCAAGUGUGCU-UGAUAGUU-C-C----CUUGGCUU--UAACUCUGUGCUACAGCAAUG----UCUGUUCUUUUCCUCUG-CAUUGAAAGGAGUUUU--UAUCCUUUCAAAUGUAUUCAGAAAGUCAGCACAUUA
AAQR03103689.1/10688-10559   UGGCACAGUGAACUCCCAUGGU-GCU-UUACGCUU-G-C----CUUGGCUU--UGACUCUGUGCUGGAGCAAUG----UCUGAUC-UUUCCUCUU-CAUUAAAAAGA--AUU--UAUCCUUCUAAAUGUAUUCAAAGAGCUGGAACCUUU
AAEX03015256.1/99943-100074  ACACUUAG--AACAGUUAGAUGGCUU-UAAUGGUU-C-C----CUUGGCUU--UGACACUGGGAUAGAGCAAUG----UGUGUUUUUUACCUCUG-CAUUGAAUAGACUGUU--UAUCCUUUUGAAUGCAUUCAGAAAGUCAACACAUUA
AAGU03064421.1/22012-22145   UUGCACAGUGAACACCCAAGUGUGCU-UUAUAGUU-C-C----CUUGGCCU--UGACUCUGUGCUAGAGCAACA----UCUGUUCUUUUCCUCUG-CAUUGGAAGGAGUAUU--UAUCCUUUUAAAUGUAUUCAAAAGGUCAGCACAUUU
#=GC SS_cons                 ::<<<<<<-<--<<-<<<<<-<-<<<.____>>>-.>.-....>>>>>---..>>-->>>>>>>:<<<<<<___....__>>>>>>:::::<<<<.<<<<<<<<<<<_____..__>>>>>>>->>>>---->>>>::::::::::::::
#=GC RF                      uUgCaCAGUgAAcaCCCAaGugUgCu.UuaUaGcU.c.C....CuUGGcUU..ugAccCUGuGcUagagcAAug....uCUgcucuUUuCCuCUG.CAuugaaaGGaaUaUU..UauCCuuuuAaaUGUAUUCAGaAaguCAGcAcAuua
//
