# STOCKHOLM 1.0
#=GF ID SNORA19
#=GF AC RF00413
#=GF DE Small nucleolar RNA SNORA19
#=GF AU Moxon SJ; 0000-0003-4644-1816
#=GF GA 80.0
#=GF NC 79.9
#=GF TC 80.1
#=GF PI snoACA19
#=GF SE Moxon SJ, INFERNAL
#=GF SS Predicted; RNAFOLD; Moxon SJ
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 24.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Mus_musculus300364;
#=GF DR snoopy; Gallus_gallus300094;
#=GF RN [1]
#=GF RM 15199136
#=GF RT Human box H/ACA pseudouridylation guide RNA machinery.
#=GF RA Kiss AM, Jady BE, Bertrand E, Kiss T
#=GF RL Mol Cell Biol 2004;24:5797-5807.
#=GF RN [2]
#=GF RM 11387227
#=GF RT RNomics: an experimental approach that identifies 201 candidates for
#=GF RT novel, small, non-messenger RNAs in mouse.
#=GF RA Huttenhofer A, Kiefmann M, Meier-Ewert S, O'Brien J, Lehrach H,
#=GF RA Bachellerie JP, Brosius J
#=GF RL EMBO J 2001;20:2943-2953.
#=GF CC ACA19 is a member of the H/ACA class of snoRNA that guide the sites of
#=GF CC modification of uridines to pseudouridines [1]. The family also includes
#=GF CC the mouse sequence MBI-51 as shown in [2].
#=GF WK Small_nucleolar_RNA_SNORA19
#=GF SQ 34

AJ609435.1/1-128           GUGCACAUUUCAUUGACCUGCUUUCUUUU-----AUGUGAGUAGUGUUAUUUCUUAUGUGCUAUACAAAUAAUUGAAGGCUAAUUAGCAGUAUAACUAUAAA-UAGU-AA-U-GCUGCCAGUCUCCUU-CAGACAAAA
AL355598.26/27295-27168    GUGCACAUUUCAUUGACCUGCUUUCUUUU-----AUGUGAGUAGUGUUAUUUCUUAUGUGCUAUACAAAUAAUUGAAGGCUAAUUAGCAGUAUAACUAUAAA-UAGU-AA-U-GCUGCCAGUCUCCUU-CAGACAAAA
AC123930.4/14152-14283     UUGCACAUUUCAUUGACCUGCUUUCUUUUGAA-AAUGUGAGCAGUGUUAUUUCUUAUGUGCUAUACAAAUAGUUGAAGGUUAAUUAGCAGAGUAACUGAAUA-UAGU-AA-U-UCUGCCAGUCUCCUU-CAGACAAAA
AANG01055650.1/1827-1698   AUGCACAUUUCAUUGACCUGCUUUCUUUUGUA-UAUGUGAGCAGUGUUAUUUCUUAUGUGCUAUACAAAUAGUUGAAGGCUAAUUAGCAGUAUAACU--AAA-UAGU-AA-U-GCUGCCAGUCUCCUU-CAGACAAAU
AAPY01661099.1/194-62      GUGCACAUUUCAUUGACCUGCUUCCUAUUGUAUAAUGUAAGCAGUGUUAUUUCUUAUGUGCUAUACAGAUUGUUGAAGGUUAAUUAGCAGUAUAACUAUAAA-UAGU-AA-U-GCUGCCAGUCUCCUU-CAGACAUAA
AAQQ01207541.1/1015-883    AUGCACAUUUCAUUGACCUGCUUUCCUUUGUA-UAUGUGAGCAGUGUUAUUUCUUAUGUGCUACACAAAUAGUUGAAGGUUAAUUAGCAGAAUAACUAUAAA-UAGU-AA-U-GCUGCCAGUCUCCUUUCAGACAAAA
AAFC03067696.1/23786-23915 GUGCACAUGUCAUUGACCUGCUUUCUCUCUUG-UAUGUGAGCAGUGUUAUUUCUUCUGUGCUAUACAAAUAAUUGAAGGCUAAUUAGCAGUAUAACU--AAA-UAGU-AA-U-ACUGCCAGUCUCCUU-CAGACAAAC
AAIY01362900.1/842-713     GUGCACAUUUCAUUGACCUGCUUCCAUUUAU---AUGUGAGCAGUGUUAUUUCUUAUGUGCUAAACAAGUAGCUGAAGGUUAAUUAGCAGUUUAACUGAACG-UAGU-AA-U-GCUGCCAGUCUCCUU-CACACAAAA
AAFR03024732.1/49382-49512 GUGCACGUUUCAUUGACCUGCUUUCAUUGUUC--ACGAAAGCAGUGUUAUUUCUGACGUGCUAUACAAUUUAUAGAAGGUUAAUUAGCAGUAUAACUUGGUA-UAGU-AA-U-GCUGCCAGUCUCCUU-CAAACACAC
AANN01771774.1/1296-1167   GUGCACAUUUCAUUGACCUGCUUUCUUCUGCU-GGUGUUAGCAGUGUUAUUUCUGAUGUGCUAUAGAAAUAGCUGAAGGUUAAUUAGCAGUGUAACU--AAA-UAGU-CG-C-GCUGCCAGUCUCCUU-CAGACAGUU
AAPN01114340.1/2052-2183   GUGCACAUUUCAUUGACCUGCUUUCAUUGCAU--UGUGGAGCAGUGUUAUUUCUGAUGUGCUAUAUAAACUGUUGAAGGUUAAUUAGCAGCACAACUCUAUA-UAGUAAA-U-GCUGCCAGUCCCCUU-CAGACAGAU
AALT01468171.1/15879-16007 GUGCACAUUUCAUUGACCUGCUUUCUAAUGUU-CUUGUGAGCAGUGUUAUUUCUCAUGUGCUACAU-UAUAAUUGAAGGCUAAUUAGCAGUAUGACU--AAA-UAGU-AA-U-ACUGCCAGUCUCCUU-CAGACAGUU
ABDC01496715.1/1084-953    GUGCACAUUCCAUUGACCUGCUUUCAUUUGUA-UAUGUGAGCAGUACUUUUUCUGAUGUGUUAUACAAAUAGUUCAAGGUAAGUUAGCAGUAUAGCUAUAAA-GAGU-AA-U-GUUGCCAGUCUCCUU-CGUAUAAAA
AAYZ01427784.1/652-522     CUGCACAUUUCAUUGACCUGCUUUCCUUUCUA-CAUGUGAGCAGUGUUAUUUCUGAUGUGCUAUACAAA--ACUGAAGGCUAAUUAGCAGCCUGACUGUUCAGUAGU-AA-U-GCUGCCAGUCUCCUU-CAGACAUGA
BAAF04038905.1/7117-6989   UUGCACAUUUCAUUGUCCUGCUCUUUACUU----UUAAGAGUUGUGAUAUUUCUGCUGUGCUAGAAAAA-AACUGGAGGUAAAUUAGCAGAGUGACUAUUUG-GUGU-CAUC-UUUGCCAGUCCCCUU-CAUACAUGU
CAAE01007485.1/50050-50178 GGGCACAGUUCAUUGUCCGGCUCCGCUGUCC---GUCGGGGCUGCGAUAUUUCUGAUGUGCUAGAACGA--GCUGGAGGUUAAUUAGCAGAGCGGCUGCUGG-GUGC-CU-CGUCUGCCAGUCCCCUU-CACACACUG
AANH01001477.1/15797-15670 AUGCACAAAUCAUUGUCAUGCUCUUAGUCUU---UUGAAAGCUGUGAUAUUUCUGUUGUGCUAGAAAAU--UCUGGAGGUAAAUUAACAGGGUGGCUACUUG-UGCC-AC-U-UCUGCCAGUCCCCUU-CAUACAAUU
AAWR02007429.1/15588-15717 GUGCACAUUUCAUUGACCUGCUUUCUCUCGUA-UAUGUGAGCAGUGUUAUUUCUUAUGUGCUAUAUAAACAGUUGAAGGUUAAUUAGCAGUAUAACU--AAA-UAGU-CA-U-GCUGCCAGUCUCCUU-CAGACAGUU
AAKN02003058.1/62071-62199 GUGCACAUUUCAUUGUCUUUUUUCAUCUAUA---UUGAGAGAAAAGAUAUUUCUGAUGUGCUAGACAACC-UUUGAAGGUAAAUUAGCAGCAUGACUAACUU-AGCC-AU-U-GCUGUCAGUCACCUU-CAGACAAGA
AAGV020558147.1/1261-1136  UAGCACAUUUCAUUGACUUGCUUUCUUUU-----GUGUGAGCAGUGUUAUUUCUUAUGUACUAUUCAAAUAGUUGAAGGGUAAUUAGCAGUAUCACU--AAA-UAGU-AA-U-GCUGCCAGUCGUCUU-CAAACAAAA
AAHX01066731.1/33946-33815 CUGCACAUUUCAUUGACCUGCUUUCCUUUGAC-UGUGUGAGCAGUGUUAAUUCUUAUGUGCUAUACUAAUAGUUGAAGGUUCAUUAGCAGAGUAACUGCAUA-UAGU-AA-U-UCUGCCAGUCCCCUU-CAGACAAAA
FJ915956.1/1-132           GUGCACAUGUCAUUGACCUGCUUUCUUCUGUA-UAUGUGAGCAGUGUUAUUUCUUAUGUGCUAUACAAAUAAUUGAAGGCUAAUUAGCAGUAUAACUAUAAA-AAGU-AA-U-GCUGCCAGUCUCCUU-CAGACAAAA
CR387241.1/112-244         AUGCACAUUUCAUUGACCUGCUUUCAUUGCAA-GUGAUGAGCAGUGUUAUUUCUGGUGUGCUAAAGAAAUAUUUGAAGGCUAAUUAGCAGCUUAGCUGUACG-UAGU-UACU-GCUGCCAGUCUCCUU-CAUACAAAG
CU855499.13/114122-114251  GUGCACAUUUCAUUGACCUGCCUUCUCUUGUA-UAUGUGAGCACUGUUAUUUCUUAUGUGCUAUACAAAUAAUUAAAGGUUCACUAGCAGUAUAACU--AUA-UAGU-AA-U-GCUGCCAGUCCCCUU-CAGACAAAU
EU240338.1/1-124           AAGCACUUCACAUUCUU----UUUCUUUAAUA--GUGGGAAC--AAAGAUAUUUGAAGUGCUAAAAAGA-ACUUGAAGGUAAAUUAGCAGUGUGGUUAAUGU-UGCC-AG-U-ACUGUCAGUCACCUU-CAUACAAAA
EU240314.1/1-133           ACGCACAUUUCAUUGACCUGCUUUCAUUGCAA-GUGAUGAGCAGUGUUAUUUCUGGUGUGCUAAAGAAAUAUUUGAAGGCUAAUUAGCAGCUUAGCUGUACG-UAGU-UACU-GCUGCCAGUCUCCUU-CAUACAAAG
FQ227960.1/40-171          UUGCACAUCUUAUUGACCUGCUUUCUUUGGAA-UAUGUGAGCAGUGUUAUUUCUUACGUGCUAUACACAUAGUUGAAGGUUAAUUAGCAGAGUAACUGCAUA-UAGU-AA-U-UCUGCCAGUCCCCUU-CAGACAAAA
AACZ03071819.1/3779-3907   GUGCACAUUUCAUUGUCUUUUUUCUUUAUU----UCAAGAGAAAAGAUAUAUCUGAUGUGCUAAACAAACCUUUGGAGGUUAAUUAGCAGCAUGACU-AAUU-UAGC-CA-UUGCUGCCAGUCACCUU-CAAACAAGU
AAWZ02027052.1/39211-39081 AUGCACAUAUCAUUGACCUGCUUCCUUUGCAU--UGGCAAGCAGUGUUAUUUCUGAUGUGCUAAAGGAAUGUCUGAAGGCUAAUUAGCAGCUUCGUUUCAUU-UAGU-GU-U-GCUGCCAGUCUCCUU-CGUACAAGC
AAGW02051107.1/19524-19655 CUGCACAUUUCAUUGGCCUGCUUUCUUUAUAU--GUGUGAGCAGUGUUAUUUCUUAUGUGCUACACAAAUAGUUGAAGGUUAAUUAGCAGUAUAACUAUCAAGUAGU-AA-U-GCUGCCAGUCUCCUU-CAGACACAA
AAQR03046717.1/1758-1886   GUGCACAUUUCAUUGACCUGCUUUCUUUAU----AUGUGAGCAGUGUUAUUUCUCAUGUGCUAUACAGAUAGUUGAAGGUUAAUUAGCAGUAUAACUAUAAA-UAGU-AA-U-GCUGCCAGUCUCCUU-CAGACAAGA
AAEX03015577.1/23253-23125 GUGCACAUUUCAUUGACCUGCUUUUCUUGUAU--AUGUGAGCAGUGUUAUUUCUUACGUGCUAUACAAAUAGUUGAAGGUUAAUUAGCAGUAUAACU--AAA-UGGU-AA-U-GCUGCCAGUCUCCUU-CAGACACAU
AAPE02042235.1/16420-16547 GCGCACAUUUCAUUGACCUGCUUUCUUGUAU---AUGGGAGUAGCGUUAUUUCUCAUGUGCUAUACAAAUAGUUGAAGGCUAAUUAGCAGUAUAACU--AAG-UAGU-AA-U-GCUGCCAGUCUCCUU-CAGACAAAC
AAGU03026370.1/19843-19972 GUGCACAUUUCACUGACCUGCUUUCUUUUAUA-UUUGUGAGCAGUGUUAUUUCUUUUGUGCUAUACAAAUAGUUGAAGGUUAAUUAGCAGUAUAACU--AAG-UAGU-AA-U-GCUGCCAGUCUCCUU-CAGACAAAC
#=GC SS_cons               ::<<<<<----------<<<<<__________.._____>>>>>------------>>>>>::::::::::::<<<<<<-------<<<<<<<-<<<_____._>>>.->.>.>>>>>------>>>>.>>:::::::
#=GC RF                    gUGCACaUUUCAUUGaCcuGCUUUcuUUuuua..aUguGAGCagUGuUAUUUCUuAuGUGCUAuAcAAAUAgUuGaAGGuUAAUUAGCAGcguagcuauaaa.Uagc.aa.c.gCUGCCAGUCuCCUu.CagACAaaa
//
