# STOCKHOLM 1.0
#=GF ID SNORA15
#=GF AC RF00398
#=GF DE Small nucleolar RNA SNORA15
#=GF AU Moxon SJ; 0000-0003-4644-1816
#=GF GA 47.0
#=GF NC 46.9
#=GF TC 47.1
#=GF PI snoACA15
#=GF SE PMID:15199136, INFERNAL
#=GF SS Predicted; RNAFOLD; Moxon SJ
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 29.94 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Loxodonta_africana300508;
#=GF DR snoopy; Loxodonta_africana300467;
#=GF RN [1]
#=GF RM 15199136
#=GF RT Human box H/ACA pseudouridylation guide RNA machinery.
#=GF RA Kiss AM, Jady BE, Bertrand E, Kiss T
#=GF RL Mol Cell Biol 2004;24:5797-5807.
#=GF RN [2]
#=GF RM 11387227
#=GF RT RNomics: an experimental approach that identifies 201 candidates for
#=GF RT novel, small, non-messenger RNAs in mouse.
#=GF RA Huttenhofer A, Kiefmann M, Meier-Ewert S, O'Brien J, Lehrach H,
#=GF RA Bachellerie JP, Brosius J
#=GF RL EMBO J 2001;20:2943-2953.
#=GF CC ACA15 is a member of the H/ACA class of snoRNA that guide the sites of
#=GF CC modification of uridines to pseudouridines [1]. This family also includes
#=GF CC the mouse MBI-79 sequence as described in [2].
#=GF WK Small_nucleolar_RNA_SNORA15
#=GF SQ 22

AJ609458.1/1-133             GCAUGGCCGAAUACUGUGU----U-UUUAUCAGUAGUUUACACAGCCAGACACCAUGCAAAAGCA--GUC--UUCCCUUUAGAAUGAC--UGAUGGUAUGCUA-AGG-UUUUUCA--U-AGCAUAUCA-UUAUUAAAGGUGAAUACAAAU
AC073210.8/134490-134624     GCAUGGCUGAAUACUGUGUUC--U-UUUAUCAGUAGUUUACACAGCCAGACACCAUGCAAAAGCA--GUC--UUCCCUUUAGAAUGAC--UGAUGGUAUGCUA-AGG-UUUUUCA--U-AGCAUAUCA-UUAUUAAAGGUGAAUACAAAU
AF357410.1/1-116             ---------------GUGUUC--U-UUAGUCAGUAAUUUACACAGCCAGACACCAUGCAAAAGUAAAGUC--UUCCUUUUAAGAUGGC-----UGAUAUGCUG-----UAUUUUA--U-GGUAUAUCA-UUAUUAGAAGUGAGUACAAAU
AF000144.1/1681-1555         GCAUGGCUGAAUACUGUGUUC--U-UUAGUCAGUAAUUUACAUAGCCAGACACCAUGCAAGAGUAAAGUC--UUCCUUU-AAGAUGGC-----UGCUAUGCUG-----UAUUUUA--U-GGUAUAUCA----UUAAAAGUGAGUACAAGU
ABDC01385519.1/2665-2531     GCAUGGCUGAAUACUGUGUUC--U-UUUAUCAAUAGUUUACACAGCCAGACACCAUGCAAAAGCA--GUC--UUCCCUUUAAAAUGAC--UGAUGAUAUGCUA-AGU-UUUUCCA--U-AGCAUAUCA-UUAUUAAAGGUGAAUACAAAU
AANU01195128.1/4636-4770     GCAUGGCUGAAUACUGUGUUG--U-UUUAUCAGUAGUUUACACAGCCAGACACCAUGCAAAAGCA--GUC--UUCCCUUUAGAAUGAC--UGAUGGUAUGCUA-AGG-UUUUUCA--U-AGCGUAUCA-UUAUUAAAGGUGAAUACAAAU
AAQQ01678318.1/233-368       GCAUGGCUGAAUACUGUGUAC--U-UUAGUCAGUAUUUUACACAGCCAGACACCAUGCAAAAGUAAAGUC--UUCCUUUUAUAAUAAC---UGUGGUAUGCUA-AGG-UUUUUCA--U-AGUGUGCCC-CUAUUAAAAGUGAAUACAGAC
AAYZ01395334.1/4311-4446     GCAUGGCUGAAUACUGUGUUC--C-UUCAUCAGUAGUCUACACAGCCAGACACCAUGCAAAAGUAAAGUC--UUCCUUU-AGAAAUUA--UUUUGAUAUGCCG-AGU-UUUUCCU--U-AGCAUAUCA-UCAUUGAAAGUGAAUACACGU
AALT01601228.1/818-951       GCAUGGCUGAAUACUGUGUUC-UU-UUUAUCAAUAUUUUACACAGCCAGACACCAUGCAAAAGUAAAGUU--UUCCCUU-GAAAAGGC--UUUUGAUAUGUUG-----CUUUUUG--U-GGCAUAUCA-UUAUUAAAAGUGGCUACAAAU
AANN01763690.1/116-252       GCAUGGCUGAAUACUGUGUUC-UU-UUGAUCAGUAGUUUACACAGCCAGACACCAUGCAAAAGUAAAGUU--UUCUCUCUGCAGUGAC--UU-UGGUAUGCUA-AGA-UUUGUG---U-GGCAUGUCAUCUGUUAGAAGUAGAUACAAAU
AAFR03053799.1/41865-41724   GCAUGGAUGAAUACUGUGUUU--UCUUUGUCGGUAGUUAACACAGCCAGACACCAUGCAAAAGUACAUUCUCCUCCUUUGAAAUGGUC-UUAAUGGUAUGCUA-AGA-AUUGCCA--UCAGCAUGCUA-UUACUCAAGGGGAUCACAAGC
AAIY01631212.1/1096-961      GCAUGGCCGAAUACUGUGUUU--U-UUUAUCCGUAAUCUACACAGCCAGACACCAUGCCAUAGUA-UCAU--UUCCCUUUA-ACGUAC--UUCCGGUGUGCUG-UGUCUUCUUCG--U-GGCAUAUCA-UCUGUAAAGGUGAACACAGAG
AAKN02045360.1/39269-39402   GCAUGGCUGAAUACUGUGUUC--U-UUAAUCAGUAGUUUACACAGCCAGACACCAUGCAAAAGUAAAAAC--UUCCUUUUAAAAUGAC---AAUGAUAUGCUG---U-UUUUUCA--U-GGUGUAUCA-UUAUUAAAAGUGAUUACAAAU
AAWR02041249.1/36934-36798   GCAUGGCUGAAUACUGUGUUU--U-UUUAUCAGUAGUUUACACAGCCAGACACCAUGCAAAAGUAAAGUC--UUCUUUU-AAAAUAACUAUGAUGUUAUGCUA--UG-UUUUUUA--U-AGCAUAUCA-UUAUUAAAAGUGGAUACAAAU
AAGV020608540.1/193-54       GCAUAGCCGAAUACUGUGUUC--U-UUUAUCAGUAGUUUACACAGCCAGACACCAUGCAAAAAUGUAGUC--UUCCCUUUAAAAUUGUUAUGAUGGUAUGCUA-AGUCUUCUUCA--U-AGCAUAUCG-UUAUUAAAGGUGAAUACAAAU
AAPE02016524.1/26587-26724   GCAUGGCUGAAUACUGUGUUC-UU-UUUGUCAGUAGCUUACACAGCCAGACACCAUGCAAAAGUA--GUC--UUCCCUUUAAAAUGGCUAUGAUGGUAUGCCA-AGU-UUUUUCA--U-AGCAUAUCA-UUACUAAAAGUGGAUACAAAU
AAQR03075567.1/62922-63056   GCAUGGCUGAAUACUGUGUUC--U-UUCAUCAGUAGUUUACACAGCCAGACACCAUGCAAAAGCA--GUC--CUCCCUUUUAAAUGAC--UGAUGAUAUGCUA-AGU-UAUUUCA--U-AGCAUAUCA-CUGUUAAAGGUGAACACAAAC
AAGW02070483.1/7410-7276     GCAUGGCUGAAUACUGUGUUC--U-UUUGUCAGUAGUUUACACAGCCAGACACCAUGCAAAAGUAAAAGC--UUCCCUUGGAAAUCA---UUUUGGUAUGCUG-AGU-UUUUCU---U-AGCAUAUCA-UUAUUGAAAGUGAAUACAAAU
AAGU03064421.1/26028-26167   GCAUGGCUGAAUACUGUGUUC-UU-UUUAUCAGUAAUUUGCACAGCCAGACACCAUGCAAAAGUAUCAUC--UUCCCUUUAAAAUGUUUAUGAU-GUAUGCUA-ACUUUUUCUCA--U-GGCAUAUCA-UUAUUAAAGGUGAAUACAAAU
AAEX03004179.1/101824-101963 GCAUGGCUGAAUACUGUGUUC-UU-UUUAUCAGUAGUUUACACAGCCAGACACCAUGCAAAAGUAAAGUG--UUCCCUUUAAAAUGCCUCUAAUGGUGUGCUA-AGC-UUUUUCA--U-AGCAUAUCA-UUUUUAAAAGUGAAUACAAGU
FJ915953.1/4-138             GCAUGGCCGAAUACUGUGUUC--U-UUUAUCAGUAGUUUACACAGCCAGACACCAUGCAAAAGCA--GUC--UUCCCUUUGGAAUGAC--CAAUGGUAUGCUA-AGG-UUUUUCA--U-AGCAUAUCA-UUAUUAAAGGUGAAUACAGAU
EU240272.1/3-134             GCAUGGACGAAUUCUGCUAUAGCU-UUCUUCAGUAGCUAUUGCAGUCAGACACUAUGCCAGAUUCAAUUC-----CCGUUUU---ACA--CUCUGGCAUGCUUUUUA-UAUGUGAGUG-GGCAUGCCC-UUGGAAGUGG----GAUACAA
#=GC SS_cons                 <<<<<<-------<<<<<<__.._.______________>>>>>>------->>>>>>::::::::::::..<<<<<<<<<<------..<<<<<<<<<<<<<.___._______..>.>>>>>>>>>.>>>>>>>>>>->>>:::::::
#=GC RF                      GCAUGGcuGAAUACUGuguUc..U.UUuaUCAGUAgUUUacaCAGCCAGACACCAUGCAAAAGUAaAgUc..uuCCcuuuagAaugac..ugauGguauGCua.agu.UuUuUcA..u.aGCauacCa.ucacuaaagGUGaauACAaAu
//
