INFERNAL1/a [1.1.5 | Sep 2023] NAME Pox_AX_element ACC RF00384 DESC Poxvirus AX element late mRNA cis-regulatory element STATES 195 NODES 46 CLEN 62 W 77 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 01:06:37 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00384/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 1.850586 CKSUM 604733070 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 62.60 NC 41.80 EFP7GF -8.8790 0.71926 ECMLC 0.51846 -9.27645 2.34118 1600000 495497 0.002422 ECMGC 0.43873 -13.82447 -0.92264 1600000 114902 0.003481 ECMLI 0.50632 -7.14669 3.98594 1600000 336633 0.003565 ECMGI 0.48088 -9.20148 2.05949 1600000 89917 0.004449 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 77 97 -6.915 -7.122 -0.054 -5.536 IL 1 1 2 1 4 1 16 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 15 77 97 -8.326 -0.019 -6.644 -1.516 -2.726 1.708 -2.112 D 4 2 3 5 3 0 13 76 95 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 15 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 62 - C - - MR 6 5 3 8 3 1 14 76 96 -8.326 -0.019 -6.644 -1.668 1.604 -2.489 -1.097 D 7 5 3 8 3 0 12 75 94 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 14 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 61 - G - - MR 9 8 3 11 3 1 13 75 95 -8.326 -0.019 -6.644 -0.581 -2.043 1.445 -1.447 D 10 8 3 11 3 0 11 74 93 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 13 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 60 - U - - MR 12 11 3 14 3 1 12 74 94 -8.326 -0.019 -6.644 -1.430 -1.436 -2.161 1.602 D 13 11 3 14 3 0 11 73 92 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 12 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 59 - A - - MR 15 14 3 17 2 1 11 73 93 -8.320 -0.005 1.705 -2.311 -1.949 -1.847 D 16 14 3 17 2 0 10 72 92 -4.432 -0.068 IR 17 17 3 17 2 1 11 74 94 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 6 ] - - - - - - B 18 17 3 19 78 0 10 72 92 [ BEGL 7 ] - - - - - - S 19 18 1 20 4 0 0 33 51 -0.045 -6.817 -6.224 -6.864 [ MATP 8 ] 2 20 A U - - MP 20 19 1 24 6 2 2 33 51 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -3.744 -2.788 -3.766 3.300 -4.081 -5.139 0.216 -3.812 -3.660 1.129 -4.205 -0.272 -0.202 -4.335 -1.725 -2.603 ML 21 19 1 24 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 1 24 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 1 24 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 3 19 a u - - MP 26 25 6 30 6 2 2 31 49 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -3.101 -0.403 -3.194 2.870 -3.531 -4.271 0.475 -3.433 -3.181 1.626 -3.713 -0.085 0.219 -3.478 -1.336 -2.166 ML 27 25 6 30 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 6 30 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 4 18 U A - - MP 32 31 6 36 6 2 2 29 47 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -4.130 -3.954 -3.975 -0.253 -2.930 -4.545 1.397 -3.622 -3.981 0.010 -4.357 -1.855 3.299 -4.284 -0.608 -2.811 ML 33 31 6 36 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 6 36 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 5 17 C G - - MP 38 37 6 42 6 2 2 27 45 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -4.493 -4.393 -4.192 -0.631 -2.922 -4.611 3.533 -3.727 -4.239 -0.382 -4.506 -2.340 0.598 -4.565 -0.628 -3.081 ML 39 37 6 42 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 6 16 U A - - MP 44 43 6 48 6 2 2 25 43 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -4.130 -3.954 -3.975 -0.253 -2.930 -4.545 1.397 -3.622 -3.981 0.010 -4.357 -1.855 3.299 -4.284 -0.608 -2.811 ML 45 43 6 48 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 6 48 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 7 15 U A - - MP 50 49 6 54 6 2 2 23 41 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -4.130 -3.954 -3.975 -0.253 -2.930 -4.545 1.397 -3.622 -3.981 0.010 -4.357 -1.855 3.299 -4.284 -0.608 -2.811 ML 51 49 6 54 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 6 54 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 8 14 U A - - MP 56 55 6 60 6 2 2 20 39 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -4.130 -3.954 -3.975 -0.253 -2.930 -4.545 1.397 -3.622 -3.981 0.010 -4.357 -1.855 3.299 -4.284 -0.608 -2.811 ML 57 55 6 60 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 6 60 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 9 13 U A - - MP 62 61 6 66 4 2 2 18 37 -6.915 -7.122 -0.054 -5.536 -4.130 -3.954 -3.975 -0.253 -2.930 -4.545 1.397 -3.622 -3.981 0.010 -4.357 -1.855 3.299 -4.284 -0.608 -2.811 ML 63 61 6 66 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 65 61 6 66 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 66 66 5 66 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 67 67 6 67 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 10 - C - - - ML 68 67 6 70 3 1 1 15 33 -7.934 -0.021 -6.588 -1.668 1.604 -2.489 -1.097 D 69 67 6 70 3 0 0 15 33 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 11 - A - - - ML 71 70 3 73 3 1 1 13 31 -7.934 -0.021 -6.588 1.705 -2.311 -1.949 -1.847 D 72 70 3 73 3 0 0 13 32 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 12 - C - - - ML 74 73 3 76 2 1 1 1 1 * 0.000 -1.668 1.604 -2.489 -1.097 D 75 73 3 76 2 0 0 0 0 * 0.000 IL 76 76 3 76 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 19 ] - - - - - - E 77 76 3 -1 0 0 0 0 0 [ BEGR 20 ] - - - - - - S 78 18 1 79 5 0 1 53 72 -7.067 -0.040 -6.882 -7.095 -7.986 IL 79 79 2 79 5 1 1 54 73 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 21 58 U A - - MP 80 79 2 84 6 2 3 53 72 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -4.130 -3.954 -3.975 -0.253 -2.930 -4.545 1.397 -3.622 -3.981 0.010 -4.357 -1.855 3.299 -4.284 -0.608 -2.811 ML 81 79 2 84 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 2 84 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 2 84 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 22 57 u g - - MP 86 85 6 90 4 2 2 51 70 -6.834 -8.080 -0.083 -4.533 -3.649 -3.634 -3.499 -0.013 -2.447 -4.029 1.827 -3.169 -3.537 0.217 -3.903 -1.725 1.742 -3.783 2.495 -2.440 ML 87 85 6 90 4 1 1 50 69 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 4 1 1 50 69 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 89 85 6 90 4 0 0 48 67 -12.737 -14.007 -2.036 -0.404 IL 90 90 5 90 4 1 1 50 69 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 91 91 6 91 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 56 - U - - MR 92 91 6 94 3 1 1 49 68 -8.326 -0.019 -6.644 -1.430 -1.436 -2.161 1.602 D 93 91 6 94 3 0 0 47 66 -6.390 -1.568 -0.620 IR 94 94 3 94 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 55 - U - - MR 95 94 3 97 5 1 1 48 67 -7.067 -0.040 -6.882 -7.095 -7.986 -1.430 -1.436 -2.161 1.602 D 96 94 3 97 5 0 0 46 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 97 97 3 97 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 54 A U - - MP 98 97 3 102 6 2 2 47 66 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -3.744 -2.788 -3.766 3.300 -4.081 -5.139 0.216 -3.812 -3.660 1.129 -4.205 -0.272 -0.202 -4.335 -1.725 -2.603 ML 99 97 3 102 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 3 102 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 101 97 3 102 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 102 102 5 102 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 53 U A - - MP 104 103 6 108 6 2 2 45 64 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -4.130 -3.954 -3.975 -0.253 -2.930 -4.545 1.397 -3.622 -3.981 0.010 -4.357 -1.855 3.299 -4.284 -0.608 -2.811 ML 105 103 6 108 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 6 108 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 25 52 C G - - MP 110 109 6 114 6 2 2 43 62 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -4.081 -4.091 -3.957 -0.438 -0.943 -4.507 3.444 -3.671 -4.001 -0.263 -4.355 -2.177 0.654 -4.240 -0.675 -2.906 ML 111 109 6 114 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 26 51 C G - - MP 116 115 6 120 6 2 2 41 60 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -4.493 -4.393 -4.192 -0.631 -2.922 -4.611 3.533 -3.727 -4.239 -0.382 -4.506 -2.340 0.598 -4.565 -0.628 -3.081 ML 117 115 6 120 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 27 50 G C - - MP 122 121 6 126 6 2 2 38 58 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -3.994 -2.696 -4.029 0.771 -4.634 -4.496 -0.085 -4.375 -3.899 3.322 -4.294 0.693 -0.377 -3.957 -2.069 -2.930 ML 123 121 6 126 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 28 49 A U - - MP 128 127 6 132 4 2 2 36 56 -6.915 -7.122 -0.054 -5.536 -3.147 -2.746 -1.102 3.110 -3.327 -4.192 0.539 -3.420 -3.293 1.143 -3.823 -0.623 0.246 -3.458 -1.232 -2.284 ML 129 127 6 132 4 1 1 37 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 4 1 1 37 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 131 127 6 132 4 0 0 36 55 -4.568 -4.250 -2.265 -0.520 IL 132 132 5 132 4 1 1 38 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 133 133 6 133 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - U - - - ML 134 133 6 136 5 1 1 34 53 -7.067 -0.040 -6.882 -7.095 -7.986 -0.720 0.046 -1.475 1.001 D 135 133 6 136 5 0 0 33 51 -4.959 -0.803 -4.221 -2.596 -2.508 IL 136 136 3 136 5 1 1 34 53 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 48 A U - - MP 137 136 3 141 6 2 2 33 52 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -3.744 -2.788 -3.766 3.300 -4.081 -5.139 0.216 -3.812 -3.660 1.129 -4.205 -0.272 -0.202 -4.335 -1.725 -2.603 ML 138 136 3 141 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 3 141 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 3 141 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 47 A U - - MP 143 142 6 147 6 2 2 31 50 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -3.744 -2.788 -3.766 3.300 -4.081 -5.139 0.216 -3.812 -3.660 1.129 -4.205 -0.272 -0.202 -4.335 -1.725 -2.603 ML 144 142 6 147 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 46 U A - - MP 149 148 6 153 6 2 2 29 48 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -4.130 -3.954 -3.975 -0.253 -2.930 -4.545 1.397 -3.622 -3.981 0.010 -4.357 -1.855 3.299 -4.284 -0.608 -2.811 ML 150 148 6 153 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 33 45 U A - - MP 155 154 6 159 4 2 2 27 46 -6.834 -8.080 -0.083 -4.533 -4.130 -3.954 -3.975 -0.253 -2.930 -4.545 1.397 -3.622 -3.981 0.010 -4.357 -1.855 3.299 -4.284 -0.608 -2.811 ML 156 154 6 159 4 1 1 26 45 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 4 1 1 26 45 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 158 154 6 159 4 0 0 24 43 -12.737 -14.007 -2.036 -0.404 IL 159 159 5 159 4 1 1 26 45 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 160 160 6 160 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 44 - C - - MR 161 160 6 163 3 1 1 25 44 -8.326 -0.019 -6.644 -1.668 1.604 -2.489 -1.097 D 162 160 6 163 3 0 0 23 42 -6.390 -1.568 -0.620 IR 163 163 3 163 3 1 1 26 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 43 - a - - MR 164 163 3 166 5 1 1 24 43 -7.067 -0.040 -6.882 -7.095 -7.986 0.713 -0.871 -1.031 0.405 D 165 163 3 166 5 0 0 23 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 166 166 3 166 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 34 42 C G - - MP 167 166 3 171 6 2 2 23 42 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -4.493 -4.393 -4.192 -0.631 -2.922 -4.611 3.533 -3.727 -4.239 -0.382 -4.506 -2.340 0.598 -4.565 -0.628 -3.081 ML 168 166 3 171 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 3 171 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 3 171 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 35 41 u g - - MP 173 172 6 177 4 2 2 21 40 -6.915 -7.122 -0.054 -5.536 -3.182 -3.090 -3.177 0.966 -2.442 -3.865 1.792 -3.042 -3.202 0.769 -3.654 -1.142 1.467 -3.388 2.151 -2.148 ML 174 172 6 177 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 176 172 6 177 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 177 177 5 177 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 178 178 6 178 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 36 - U - - - ML 179 178 6 181 3 1 1 18 36 -7.934 -0.021 -6.588 -1.430 -1.436 -2.161 1.602 D 180 178 6 181 3 0 0 17 36 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - c - - - ML 182 181 3 184 3 1 1 16 35 -7.934 -0.021 -6.588 -0.784 0.886 -1.584 0.308 D 183 181 3 184 3 0 0 16 34 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - a - - - ML 185 184 3 187 3 1 1 15 33 -7.934 -0.021 -6.588 0.645 0.212 -1.087 -0.309 D 186 184 3 187 3 0 0 15 33 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 39 - U - - - ML 188 187 3 190 3 1 1 13 31 -7.934 -0.021 -6.588 -1.430 -1.436 -2.161 1.602 D 189 187 3 190 3 0 0 13 32 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 40 - C - - - ML 191 190 3 193 2 1 1 1 1 * 0.000 -1.668 1.604 -2.489 -1.097 D 192 190 3 193 2 0 0 0 0 * 0.000 IL 193 193 3 193 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 194 193 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Pox_AX_element ACC RF00384 DESC Poxvirus AX element late mRNA cis-regulatory element LENG 62 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 01:06:37 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00384/CM NSEQ 10 EFFN 2.729492 CKSUM 604733070 STATS LOCAL MSV -8.2148 0.71926 STATS LOCAL VITERBI -8.7580 0.71926 STATS LOCAL FORWARD -3.6369 0.71926 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.31750 1.53204 1.67460 1.11255 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 0.00000 * 1 2.88213 3.78363 0.12054 3.35797 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 2 0.27402 3.00068 1.99322 2.92488 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 3 0.45645 2.65212 1.55097 2.47779 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 4 3.18149 2.06045 2.95189 0.24995 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 5 3.38237 0.19942 3.17802 2.25227 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 6 3.17741 2.06014 2.94997 0.25035 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 7 3.17612 2.06005 2.94936 0.25047 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 8 3.17512 2.05997 2.94888 0.25057 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 9 3.17431 2.05991 2.94850 0.25065 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 10 3.06325 0.16251 3.63843 2.56444 10 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 11 0.12776 3.41836 3.12521 3.14087 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 12 3.06325 0.16251 3.63843 2.56444 12 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 13 0.28425 3.13536 1.89657 2.92141 13 A - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 14 0.28420 3.13568 1.89661 2.92178 14 A - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 15 0.28415 3.13596 1.89665 2.92211 15 A - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 16 0.28412 3.13614 1.89667 2.92232 16 A - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 17 2.52965 3.34232 0.17240 3.13930 17 G - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 18 0.28425 3.13538 1.89657 2.92143 18 A - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 19 2.69067 1.52271 2.44817 0.46586 19 U - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 20 3.12592 2.30488 2.79884 0.22884 20 U - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 21 3.19385 2.06136 2.95771 0.24876 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 22 2.88463 1.58868 2.67228 0.39923 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 23 0.27625 2.98968 1.99086 2.90959 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 24 3.17137 2.05969 2.94711 0.25094 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 25 3.19185 0.22576 3.00580 2.19380 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 26 3.37708 0.19990 3.17537 2.25131 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 27 2.23737 2.98468 0.24231 2.84911 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 28 0.31596 2.71469 2.04506 2.58611 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 29 2.07567 1.32573 2.61385 0.62424 29 U - - - 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 30 0.27485 2.99654 1.99233 2.91912 30 A - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 31 0.27498 2.99594 1.99220 2.91828 31 A - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 32 3.17791 2.06018 2.95020 0.25030 32 U - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 33 3.17673 2.06009 2.94965 0.25041 33 U - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 34 3.35905 0.20155 3.16627 2.24801 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 35 1.98063 1.55995 2.16130 0.62232 35 U - - < 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 36 2.77924 2.71471 3.30292 0.18043 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 37 2.14265 0.66313 2.72507 1.19773 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 38 0.88898 1.17228 2.28794 1.72715 38 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 39 2.77924 2.71471 3.30292 0.18043 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 40 3.06325 0.16251 3.63843 2.56444 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 41 1.68646 2.33370 0.58438 1.82983 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 42 2.53468 3.34962 0.17118 3.14784 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 43 0.84304 2.09818 2.21508 1.08538 43 a - - - 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 44 3.06325 0.16251 3.63843 2.56444 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 45 0.28428 3.13523 1.89655 2.92127 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 46 0.28440 3.13447 1.89645 2.92038 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 47 3.13183 2.30574 2.80125 0.22823 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 48 3.12427 2.30464 2.79816 0.22902 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 49 2.81120 2.26468 2.22708 0.31723 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 50 3.07538 0.38111 2.80245 1.56034 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 51 2.53096 3.34423 0.17208 3.14153 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 52 2.15985 3.17201 0.23344 2.97729 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 53 0.28344 3.14019 1.89722 2.92703 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 54 3.15043 2.30840 2.80879 0.22631 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 55 2.77924 2.71471 3.30292 0.18043 55 U - - - 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 56 2.77924 2.71471 3.30292 0.18043 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 57 1.48050 2.83458 0.44195 2.64574 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 58 0.28191 3.14943 1.89846 2.93777 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 59 0.12776 3.41836 3.12521 3.14087 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 60 2.77924 2.71471 3.30292 0.18043 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 61 1.96424 3.12522 0.28690 2.72991 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 1.09861 0.40547 62 3.06325 0.16251 3.63843 2.56444 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.02030 3.90721 * 1.46634 0.26236 0.00000 * //